data_6J9V # _model_server_result.job_id WWTjnYCZrfhJg-TXmubB6w _model_server_result.datetime_utc '2024-11-17 13:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6J9V # _exptl.entry_id 6J9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J9V _cell.length_a 62.416 _cell.length_b 120.948 _cell.length_c 154.097 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6J9V _atom_sites.fract_transf_matrix[1][1] 0.016022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 701 701 ADP ADP . D 3 GOL A 1 702 601 GOL GOL . E 2 ADP B 1 701 701 ADP ADP . F 3 GOL B 1 702 601 GOL GOL . G 3 GOL B 1 703 602 GOL GOL . H 4 HOH A 1 801 14 HOH HOH . H 4 HOH A 2 802 21 HOH HOH . H 4 HOH A 3 803 20 HOH HOH . H 4 HOH A 4 804 19 HOH HOH . H 4 HOH A 5 805 16 HOH HOH . H 4 HOH A 6 806 22 HOH HOH . I 4 HOH B 1 801 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 3.011 -11.36 23.609 0.8 111.01 ? PB ADP 701 A 1 HETATM 2 O O1B ADP . . . C 2 3.496 -10.623 22.374 0.8 81.76 ? O1B ADP 701 A 1 HETATM 3 O O2B ADP . . . C 2 1.496 -11.257 23.773 0.8 110.25 ? O2B ADP 701 A 1 HETATM 4 O O3B ADP . . . C 2 3.58 -12.764 23.601 0.8 104.6 ? O3B ADP 701 A 1 HETATM 5 P PA ADP . . . C 2 2.89 -9.824 26.168 0.8 102.18 ? PA ADP 701 A 1 HETATM 6 O O1A ADP . . . C 2 1.413 -9.573 25.9 0.8 95.92 ? O1A ADP 701 A 1 HETATM 7 O O2A ADP . . . C 2 3.322 -10.235 27.56 0.8 90.39 ? O2A ADP 701 A 1 HETATM 8 O O3A ADP . . . C 2 3.635 -10.712 24.995 0.8 94.75 ? O3A ADP 701 A 1 HETATM 9 O O5' ADP . . . C 2 3.621 -8.422 25.969 0.8 106.76 ? O5' ADP 701 A 1 HETATM 10 C C5' ADP . . . C 2 3.281 -7.376 26.854 0.8 103.07 ? C5' ADP 701 A 1 HETATM 11 C C4' ADP . . . C 2 4.162 -6.206 26.5 0.8 100.81 ? C4' ADP 701 A 1 HETATM 12 O O4' ADP . . . C 2 3.54 -5.072 27.07 0.8 102.04 ? O4' ADP 701 A 1 HETATM 13 C C3' ADP . . . C 2 5.574 -6.32 27.053 0.8 102.03 ? C3' ADP 701 A 1 HETATM 14 O O3' ADP . . . C 2 6.503 -6.227 25.961 0.8 97.64 ? O3' ADP 701 A 1 HETATM 15 C C2' ADP . . . C 2 5.697 -5.19 28.072 0.8 100.31 ? C2' ADP 701 A 1 HETATM 16 O O2' ADP . . . C 2 6.702 -4.246 27.713 0.8 93.85 ? O2' ADP 701 A 1 HETATM 17 C C1' ADP . . . C 2 4.364 -4.456 28.055 0.8 100.84 ? C1' ADP 701 A 1 HETATM 18 N N9 ADP . . . C 2 3.592 -4.462 29.331 0.8 100.6 ? N9 ADP 701 A 1 HETATM 19 C C8 ADP . . . C 2 3.332 -5.505 30.165 0.8 95.92 ? C8 ADP 701 A 1 HETATM 20 N N7 ADP . . . C 2 2.57 -5.093 31.225 0.8 97.07 ? N7 ADP 701 A 1 HETATM 21 C C5 ADP . . . C 2 2.324 -3.772 31.057 0.8 93.51 ? C5 ADP 701 A 1 HETATM 22 C C6 ADP . . . C 2 1.589 -2.704 31.763 0.8 88.44 ? C6 ADP 701 A 1 HETATM 23 N N6 ADP . . . C 2 0.939 -2.966 32.917 0.8 97.32 ? N6 ADP 701 A 1 HETATM 24 N N1 ADP . . . C 2 1.586 -1.462 31.224 0.8 79.78 ? N1 ADP 701 A 1 HETATM 25 C C2 ADP . . . C 2 2.217 -1.14 30.083 0.8 83.18 ? C2 ADP 701 A 1 HETATM 26 N N3 ADP . . . C 2 2.897 -2.059 29.383 0.8 89.09 ? N3 ADP 701 A 1 HETATM 27 C C4 ADP . . . C 2 2.99 -3.36 29.806 0.8 98.18 ? C4 ADP 701 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 882 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #