data_6J9V # _model_server_result.job_id kWdspgtpapGaGeSHsdQoZg _model_server_result.datetime_utc '2024-11-17 13:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 6J9V # _exptl.entry_id 6J9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6J9V _cell.length_a 62.416 _cell.length_b 120.948 _cell.length_c 154.097 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6J9V _atom_sites.fract_transf_matrix[1][1] 0.016022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 701 701 ADP ADP . D 3 GOL A 1 702 601 GOL GOL . E 2 ADP B 1 701 701 ADP ADP . F 3 GOL B 1 702 601 GOL GOL . G 3 GOL B 1 703 602 GOL GOL . H 4 HOH A 1 801 14 HOH HOH . H 4 HOH A 2 802 21 HOH HOH . H 4 HOH A 3 803 20 HOH HOH . H 4 HOH A 4 804 19 HOH HOH . H 4 HOH A 5 805 16 HOH HOH . H 4 HOH A 6 806 22 HOH HOH . I 4 HOH B 1 801 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 50.426 29.467 43.223 1 132.75 ? PB ADP 701 B 1 HETATM 2 O O1B ADP . . . E 2 51.304 29.189 42.024 1 110.88 ? O1B ADP 701 B 1 HETATM 3 O O2B ADP . . . E 2 51.065 29.219 44.586 1 115.09 ? O2B ADP 701 B 1 HETATM 4 O O3B ADP . . . E 2 49.02 28.901 43.112 1 131.17 ? O3B ADP 701 B 1 HETATM 5 P PA ADP . . . E 2 49.182 31.787 42.217 1 80.41 ? PA ADP 701 B 1 HETATM 6 O O1A ADP . . . E 2 49.524 31.435 40.794 1 79.83 ? O1A ADP 701 B 1 HETATM 7 O O2A ADP . . . E 2 47.776 31.611 42.778 1 86.42 ? O2A ADP 701 B 1 HETATM 8 O O3A ADP . . . E 2 50.244 31.067 43.169 1 98.23 ? O3A ADP 701 B 1 HETATM 9 O O5' ADP . . . E 2 49.63 33.298 42.453 1 79.21 ? O5' ADP 701 B 1 HETATM 10 C C5' ADP . . . E 2 49.385 34.021 43.668 1 78.13 ? C5' ADP 701 B 1 HETATM 11 C C4' ADP . . . E 2 50.394 35.174 43.825 1 71.43 ? C4' ADP 701 B 1 HETATM 12 O O4' ADP . . . E 2 51.723 34.651 43.796 1 65.39 ? O4' ADP 701 B 1 HETATM 13 C C3' ADP . . . E 2 50.336 36.14 42.649 1 66.67 ? C3' ADP 701 B 1 HETATM 14 O O3' ADP . . . E 2 50.692 37.445 43.09 1 66.36 ? O3' ADP 701 B 1 HETATM 15 C C2' ADP . . . E 2 51.374 35.649 41.662 1 65.58 ? C2' ADP 701 B 1 HETATM 16 O O2' ADP . . . E 2 51.895 36.669 40.798 1 67.68 ? O2' ADP 701 B 1 HETATM 17 C C1' ADP . . . E 2 52.41 35.183 42.657 1 63.57 ? C1' ADP 701 B 1 HETATM 18 N N9 ADP . . . E 2 53.335 34.238 42.002 1 57.8 ? N9 ADP 701 B 1 HETATM 19 C C8 ADP . . . E 2 53.153 32.924 41.805 1 66.26 ? C8 ADP 701 B 1 HETATM 20 N N7 ADP . . . E 2 54.232 32.375 41.182 1 61.79 ? N7 ADP 701 B 1 HETATM 21 C C5 ADP . . . E 2 55.121 33.362 41.026 1 61.15 ? C5 ADP 701 B 1 HETATM 22 C C6 ADP . . . E 2 56.472 33.472 40.44 1 65.54 ? C6 ADP 701 B 1 HETATM 23 N N6 ADP . . . E 2 57.054 32.361 39.912 1 63.64 ? N6 ADP 701 B 1 HETATM 24 N N1 ADP . . . E 2 57.076 34.691 40.476 1 61.62 ? N1 ADP 701 B 1 HETATM 25 C C2 ADP . . . E 2 56.485 35.786 41.027 1 67.18 ? C2 ADP 701 B 1 HETATM 26 N N3 ADP . . . E 2 55.249 35.767 41.566 1 61.77 ? N3 ADP 701 B 1 HETATM 27 C C4 ADP . . . E 2 54.536 34.591 41.569 1 55.68 ? C4 ADP 701 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #