data_6J9X # _model_server_result.job_id BcF7K76tduyfHJkZ4Lp0EA _model_server_result.datetime_utc '2024-11-17 11:42:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6j9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6J9X # _exptl.entry_id 6J9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.82 _cell.angle_gamma 90 _cell.entry_id 6J9X _cell.length_a 62.38 _cell.length_b 119.34 _cell.length_c 154.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 17 A THR 11 1_555 A N TPO 18 A TPO 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C TPO 18 A TPO 12 1_555 A N SER 19 A SER 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale3 C C THR 17 C THR 11 1_555 C N TPO 18 C TPO 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale4 C C TPO 18 C TPO 12 1_555 C N SER 19 C SER 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6J9X _atom_sites.fract_transf_matrix[1][1] 0.016031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 601 601 GOL GOL . F 3 GOL B 1 601 601 GOL GOL . G 3 GOL C 1 601 601 GOL GOL . H 3 GOL D 1 601 601 GOL GOL . I 4 HOH A 1 701 2 HOH HOH . I 4 HOH A 2 702 9 HOH HOH . I 4 HOH A 3 703 40 HOH HOH . I 4 HOH A 4 704 45 HOH HOH . I 4 HOH A 5 705 28 HOH HOH . I 4 HOH A 6 706 26 HOH HOH . I 4 HOH A 7 707 38 HOH HOH . I 4 HOH A 8 708 29 HOH HOH . I 4 HOH A 9 709 43 HOH HOH . I 4 HOH A 10 710 1 HOH HOH . J 4 HOH B 1 701 25 HOH HOH . J 4 HOH B 2 702 17 HOH HOH . J 4 HOH B 3 703 50 HOH HOH . J 4 HOH B 4 704 5 HOH HOH . J 4 HOH B 5 705 27 HOH HOH . J 4 HOH B 6 706 14 HOH HOH . J 4 HOH B 7 707 13 HOH HOH . J 4 HOH B 8 708 20 HOH HOH . J 4 HOH B 9 709 15 HOH HOH . J 4 HOH B 10 710 12 HOH HOH . J 4 HOH B 11 711 37 HOH HOH . K 4 HOH C 1 701 36 HOH HOH . K 4 HOH C 2 702 22 HOH HOH . K 4 HOH C 3 703 24 HOH HOH . K 4 HOH C 4 704 16 HOH HOH . K 4 HOH C 5 705 41 HOH HOH . K 4 HOH C 6 706 4 HOH HOH . K 4 HOH C 7 707 19 HOH HOH . K 4 HOH C 8 708 21 HOH HOH . K 4 HOH C 9 709 47 HOH HOH . K 4 HOH C 10 710 33 HOH HOH . K 4 HOH C 11 711 44 HOH HOH . K 4 HOH C 12 712 51 HOH HOH . L 4 HOH D 1 701 8 HOH HOH . L 4 HOH D 2 702 32 HOH HOH . L 4 HOH D 3 703 18 HOH HOH . L 4 HOH D 4 704 30 HOH HOH . L 4 HOH D 5 705 23 HOH HOH . L 4 HOH D 6 706 7 HOH HOH . L 4 HOH D 7 707 31 HOH HOH . L 4 HOH D 8 708 3 HOH HOH . L 4 HOH D 9 709 39 HOH HOH . L 4 HOH D 10 710 11 HOH HOH . L 4 HOH D 11 711 10 HOH HOH . L 4 HOH D 12 712 35 HOH HOH . L 4 HOH D 13 713 6 HOH HOH . L 4 HOH D 14 714 49 HOH HOH . L 4 HOH D 15 715 48 HOH HOH . L 4 HOH D 16 716 46 HOH HOH . L 4 HOH D 17 717 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -129.775 0.436 176.272 1 80.38 ? C1 GOL 601 B 1 HETATM 2 O O1 GOL . . . F 3 -129.094 0.314 175.009 1 75.29 ? O1 GOL 601 B 1 HETATM 3 C C2 GOL . . . F 3 -129.348 -0.681 177.207 1 89.96 ? C2 GOL 601 B 1 HETATM 4 O O2 GOL . . . F 3 -127.923 -0.738 177.295 1 98.81 ? O2 GOL 601 B 1 HETATM 5 C C3 GOL . . . F 3 -129.899 -0.421 178.597 1 101.18 ? C3 GOL 601 B 1 HETATM 6 O O3 GOL . . . F 3 -128.99 0.309 179.443 1 99.05 ? O3 GOL 601 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #