data_6JAS
#
_model_server_result.job_id            mBNxvZUJHPRY646S_UOO_g 
_model_server_result.datetime_utc      '2024-12-18 18:40:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jas 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    6JAS 
#
_exptl.entry_id    6JAS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JAS 
_cell.length_a            136.567 
_cell.length_b            157.153 
_cell.length_c            107.265 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JAS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 48 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 19 A CYS 19 1_555 A SG CYS 39 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 118 A CYS 118 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 137 A CYS 137 1_555 A SG CYS 331 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf5 A SG CYS 158 A CYS 158 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 A SG CYS 161 A CYS 161 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf7 A SG CYS 171 A CYS 171 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 A SG CYS 227 A CYS 227 1_555 A SG CYS 241 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 A SG CYS 339 A CYS 339 1_555 A SG CYS 596 A CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 A SG CYS 345 A CYS 345 1_555 A SG CYS 377 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf11 A SG CYS 355 A CYS 355 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf12 A SG CYS 402 A CYS 402 1_555 A SG CYS 674 A CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 A SG CYS 450 A CYS 450 1_555 A SG CYS 523 A CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 A SG CYS 474 A CYS 474 1_555 A SG CYS 665 A CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf15 A SG CYS 484 A CYS 484 1_555 A SG CYS 498 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 A SG CYS 495 A CYS 495 1_555 A SG CYS 506 A CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 A SG CYS 563 A CYS 563 1_555 A SG CYS 577 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OD1 ASP 392 A ASP 392 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc2 A OH TYR 426 A TYR 426 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc3 A OH TYR 517 A TYR 517 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc4 A NE2 HIS 585 A HIS 585 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 B FE FE . A FE 701 1_555 D O7 MLI . A MLI 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc6 B FE FE . A FE 701 1_555 D O9 MLI . A MLI 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc7 C FE FE . A FE 702 1_555 E O6 CIT . A CIT 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc8 C FE FE . A FE 702 1_555 F O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc9 C FE FE . A FE 702 1_555 F O HOH . A HOH 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 257 n n 
C1 C3 MLI sing 258 n n 
C1 H11 MLI sing 259 n n 
C1 H12 MLI sing 260 n n 
C2 O6 MLI doub 261 n n 
C2 O7 MLI sing 262 n n 
C3 O8 MLI doub 263 n n 
C3 O9 MLI sing 264 n n 
#
_atom_sites.entry_id                     6JAS 
_atom_sites.fract_transf_matrix[1][1]    0.007322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009323 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 701 684 FE FE . 
C 2 FE A 1 702 685 FE FE . 
D 3 MLI A 1 703 686 MLI MLI . 
E 4 CIT A 1 704 690 CIT CIT . 
F 5 HOH A 1 801 70 HOH HOH . 
F 5 HOH A 2 802 22 HOH HOH . 
F 5 HOH A 3 803 11 HOH HOH . 
F 5 HOH A 4 804 49 HOH HOH . 
F 5 HOH A 5 805 9 HOH HOH . 
F 5 HOH A 6 806 51 HOH HOH . 
F 5 HOH A 7 807 69 HOH HOH . 
F 5 HOH A 8 808 46 HOH HOH . 
F 5 HOH A 9 809 7 HOH HOH . 
F 5 HOH A 10 810 32 HOH HOH . 
F 5 HOH A 11 811 2 HOH HOH . 
F 5 HOH A 12 812 42 HOH HOH . 
F 5 HOH A 13 813 53 HOH HOH . 
F 5 HOH A 14 814 58 HOH HOH . 
F 5 HOH A 15 815 30 HOH HOH . 
F 5 HOH A 16 816 19 HOH HOH . 
F 5 HOH A 17 817 33 HOH HOH . 
F 5 HOH A 18 818 72 HOH HOH . 
F 5 HOH A 19 819 74 HOH HOH . 
F 5 HOH A 20 820 15 HOH HOH . 
F 5 HOH A 21 821 4 HOH HOH . 
F 5 HOH A 22 822 48 HOH HOH . 
F 5 HOH A 23 823 25 HOH HOH . 
F 5 HOH A 24 824 13 HOH HOH . 
F 5 HOH A 25 825 67 HOH HOH . 
F 5 HOH A 26 826 50 HOH HOH . 
F 5 HOH A 27 827 57 HOH HOH . 
F 5 HOH A 28 828 10 HOH HOH . 
F 5 HOH A 29 829 62 HOH HOH . 
F 5 HOH A 30 830 59 HOH HOH . 
F 5 HOH A 31 831 29 HOH HOH . 
F 5 HOH A 32 832 3 HOH HOH . 
F 5 HOH A 33 833 20 HOH HOH . 
F 5 HOH A 34 834 73 HOH HOH . 
F 5 HOH A 35 835 54 HOH HOH . 
F 5 HOH A 36 836 66 HOH HOH . 
F 5 HOH A 37 837 75 HOH HOH . 
F 5 HOH A 38 838 16 HOH HOH . 
F 5 HOH A 39 839 38 HOH HOH . 
F 5 HOH A 40 840 60 HOH HOH . 
F 5 HOH A 41 841 71 HOH HOH . 
F 5 HOH A 42 842 43 HOH HOH . 
F 5 HOH A 43 843 35 HOH HOH . 
F 5 HOH A 44 844 6 HOH HOH . 
F 5 HOH A 45 845 39 HOH HOH . 
F 5 HOH A 46 846 47 HOH HOH . 
F 5 HOH A 47 847 40 HOH HOH . 
F 5 HOH A 48 848 8 HOH HOH . 
F 5 HOH A 49 849 44 HOH HOH . 
F 5 HOH A 50 850 17 HOH HOH . 
F 5 HOH A 51 851 52 HOH HOH . 
F 5 HOH A 52 852 45 HOH HOH . 
F 5 HOH A 53 853 68 HOH HOH . 
F 5 HOH A 54 854 37 HOH HOH . 
F 5 HOH A 55 855 12 HOH HOH . 
F 5 HOH A 56 856 56 HOH HOH . 
F 5 HOH A 57 857 27 HOH HOH . 
F 5 HOH A 58 858 34 HOH HOH . 
F 5 HOH A 59 859 36 HOH HOH . 
F 5 HOH A 60 860 63 HOH HOH . 
F 5 HOH A 61 861 14 HOH HOH . 
F 5 HOH A 62 862 28 HOH HOH . 
F 5 HOH A 63 863 21 HOH HOH . 
F 5 HOH A 64 864 64 HOH HOH . 
F 5 HOH A 65 865 24 HOH HOH . 
F 5 HOH A 66 866 61 HOH HOH . 
F 5 HOH A 67 867 18 HOH HOH . 
F 5 HOH A 68 868 5 HOH HOH . 
F 5 HOH A 69 869 31 HOH HOH . 
F 5 HOH A 70 870 1 HOH HOH . 
F 5 HOH A 71 871 26 HOH HOH . 
F 5 HOH A 72 872 65 HOH HOH . 
F 5 HOH A 73 873 55 HOH HOH . 
F 5 HOH A 74 874 41 HOH HOH . 
F 5 HOH A 75 875 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . D 3 36.525 48.358 -7.332 1 19.79 ? C1 MLI 703 A 1 
HETATM 2 C C2 MLI . . . D 3 35.371 49.212 -6.853 1 36.85 ? C2 MLI 703 A 1 
HETATM 3 C C3 MLI . . . D 3 36.812 47.209 -6.391 1 32.49 ? C3 MLI 703 A 1 
HETATM 4 O O6 MLI . . . D 3 34.618 49.717 -7.713 1 42.75 ? O6 MLI 703 A 1 
HETATM 5 O O7 MLI . . . D 3 35.209 49.403 -5.627 1 38.68 ? O7 MLI 703 A 1 
HETATM 6 O O8 MLI . . . D 3 36.769 46.044 -6.844 1 41.04 ? O8 MLI 703 A 1 
HETATM 7 O O9 MLI . . . D 3 37.098 47.455 -5.199 1 35.33 ? O9 MLI 703 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           7 
#