data_6JB1
#
_model_server_result.job_id            sjcOLZkZKR3vwK-FY6aVAg 
_model_server_result.datetime_utc      '2024-11-04 22:39:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jb1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":1601}' 
#
_entry.id    6JB1 
#
_exptl.entry_id    6JB1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1229.312 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Digitonin 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JB1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 BA N N 
? 5 SA N N 
? 5 JB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 B SG CYS 6 B CYS 6 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 D SG CYS 6 D CYS 6 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 110 E CYS 110 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf6 F SG CYS 6 F CYS 6 1_555 F SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 G SG CYS 110 G CYS 110 1_555 G SG CYS 142 G CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf8 H SG CYS 6 H CYS 6 1_555 H SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C56 H92 O29' 
_chem_comp.formula_weight    1229.312 
_chem_comp.id                AJP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Digitonin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6JB1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 POV A 1 401 4006 POV POV . 
J 4 AGS A 1 402 401 AGS AGS . 
K 5 AJP B 1 1601 2002 AJP AJP . 
L 4 AGS B 1 1602 2501 AGS AGS . 
M 6 BJX B 1 1603 3001 BJX RPG . 
N 3 POV B 1 1604 4001 POV POV . 
O 3 POV B 1 1605 4002 POV POV . 
P 3 POV B 1 1606 4003 POV POV . 
Q 3 POV B 1 1607 4004 POV POV . 
R 3 POV B 1 1608 4005 POV POV . 
S 3 POV B 1 1609 4007 POV POV . 
T 3 POV B 1 1610 4008 POV POV . 
U 3 POV B 1 1611 4009 POV POV . 
V 7 PTY B 1 1612 4011 PTY PTY . 
W 7 PTY B 1 1613 4012 PTY PTY . 
X 7 PTY B 1 1614 4013 PTY PTY . 
Y 7 PTY B 1 1615 4014 PTY PTY . 
Z 4 AGS C 1 401 401 AGS AGS . 
AA 3 POV C 1 402 4006 POV POV . 
BA 5 AJP D 1 1601 2002 AJP AJP . 
CA 4 AGS D 1 1602 2501 AGS AGS . 
DA 6 BJX D 1 1603 3001 BJX RPG . 
EA 3 POV D 1 1604 4001 POV POV . 
FA 3 POV D 1 1605 4002 POV POV . 
GA 3 POV D 1 1606 4003 POV POV . 
HA 3 POV D 1 1607 4004 POV POV . 
IA 3 POV D 1 1608 4005 POV POV . 
JA 3 POV D 1 1609 4007 POV POV . 
KA 3 POV D 1 1610 4008 POV POV . 
LA 3 POV D 1 1611 4009 POV POV . 
MA 7 PTY D 1 1612 4011 PTY PTY . 
NA 7 PTY D 1 1613 4012 PTY PTY . 
OA 7 PTY D 1 1614 4013 PTY PTY . 
PA 7 PTY D 1 1615 4014 PTY PTY . 
QA 4 AGS E 1 401 401 AGS AGS . 
RA 3 POV E 1 402 4006 POV POV . 
SA 5 AJP F 1 1601 2002 AJP AJP . 
TA 4 AGS F 1 1602 2501 AGS AGS . 
UA 6 BJX F 1 1603 3001 BJX RPG . 
VA 3 POV F 1 1604 4001 POV POV . 
WA 3 POV F 1 1605 4002 POV POV . 
XA 3 POV F 1 1606 4003 POV POV . 
YA 3 POV F 1 1607 4004 POV POV . 
ZA 3 POV F 1 1608 4005 POV POV . 
AB 3 POV F 1 1609 4007 POV POV . 
BB 3 POV F 1 1610 4008 POV POV . 
CB 3 POV F 1 1611 4009 POV POV . 
DB 7 PTY F 1 1612 4011 PTY PTY . 
EB 7 PTY F 1 1613 4012 PTY PTY . 
FB 7 PTY F 1 1614 4013 PTY PTY . 
GB 7 PTY F 1 1615 4014 PTY PTY . 
HB 4 AGS G 1 401 401 AGS AGS . 
IB 3 POV G 1 402 4006 POV POV . 
JB 5 AJP H 1 1601 2002 AJP AJP . 
KB 4 AGS H 1 1602 2501 AGS AGS . 
LB 6 BJX H 1 1603 3001 BJX RPG . 
MB 3 POV H 1 1604 4001 POV POV . 
NB 3 POV H 1 1605 4002 POV POV . 
OB 3 POV H 1 1606 4003 POV POV . 
PB 3 POV H 1 1607 4004 POV POV . 
QB 3 POV H 1 1608 4005 POV POV . 
RB 3 POV H 1 1609 4007 POV POV . 
SB 3 POV H 1 1610 4008 POV POV . 
TB 3 POV H 1 1611 4009 POV POV . 
UB 7 PTY H 1 1612 4011 PTY PTY . 
VB 7 PTY H 1 1613 4012 PTY PTY . 
WB 7 PTY H 1 1614 4013 PTY PTY . 
XB 7 PTY H 1 1615 4014 PTY PTY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 AJP . . . BA 5 95.425 172.911 150.119 1 216.12 ? C01 AJP 1601 D 1 
HETATM 2 C C02 AJP . . . BA 5 96.272 173.93 149.358 1 220.88 ? C02 AJP 1601 D 1 
HETATM 3 C C03 AJP . . . BA 5 96 175.356 149.833 1 214.13 ? C03 AJP 1601 D 1 
HETATM 4 C C04 AJP . . . BA 5 97.231 175.984 150.481 1 207.16 ? C04 AJP 1601 D 1 
HETATM 5 C C05 AJP . . . BA 5 97.874 174.997 151.452 1 208.79 ? C05 AJP 1601 D 1 
HETATM 6 C C06 AJP . . . BA 5 99.066 175.606 152.222 1 202.62 ? C06 AJP 1601 D 1 
HETATM 7 C C07 AJP . . . BA 5 98.669 175.324 153.673 1 206.03 ? C07 AJP 1601 D 1 
HETATM 8 C C08 AJP . . . BA 5 97.171 175.418 153.574 1 213.3 ? C08 AJP 1601 D 1 
HETATM 9 O O09 AJP . . . BA 5 96.892 174.62 152.437 1 206.28 ? O09 AJP 1601 D 1 
HETATM 10 C C10 AJP . . . BA 5 96.695 174.992 154.946 1 216.07 ? C10 AJP 1601 D 1 
HETATM 11 C C11 AJP . . . BA 5 97.933 175.274 155.809 1 214.41 ? C11 AJP 1601 D 1 
HETATM 12 C C12 AJP . . . BA 5 98.884 176.11 154.962 1 213.72 ? C12 AJP 1601 D 1 
HETATM 13 C C13 AJP . . . BA 5 100.249 175.982 155.625 1 209.48 ? C13 AJP 1601 D 1 
HETATM 14 C C14 AJP . . . BA 5 100.185 176.569 157.041 1 207.27 ? C14 AJP 1601 D 1 
HETATM 15 C C15 AJP . . . BA 5 99.061 175.995 157.915 1 202.08 ? C15 AJP 1601 D 1 
HETATM 16 C C16 AJP . . . BA 5 97.729 175.916 157.171 1 205.12 ? C16 AJP 1601 D 1 
HETATM 17 C C17 AJP . . . BA 5 96.702 175.185 158.024 1 203.02 ? C17 AJP 1601 D 1 
HETATM 18 C C18 AJP . . . BA 5 96.461 175.993 159.287 1 210.88 ? C18 AJP 1601 D 1 
HETATM 19 C C19 AJP . . . BA 5 97.775 176.169 160.034 1 209.77 ? C19 AJP 1601 D 1 
HETATM 20 C C20 AJP . . . BA 5 98.851 176.82 159.174 1 203.3 ? C20 AJP 1601 D 1 
HETATM 21 C C21 AJP . . . BA 5 100.143 176.862 159.982 1 202.08 ? C21 AJP 1601 D 1 
HETATM 22 C C22 AJP . . . BA 5 99.967 177.623 161.293 1 206.57 ? C22 AJP 1601 D 1 
HETATM 23 C C23 AJP . . . BA 5 98.784 177.102 162.11 1 210.73 ? C23 AJP 1601 D 1 
HETATM 24 C C24 AJP . . . BA 5 97.519 177.005 161.272 1 209.38 ? C24 AJP 1601 D 1 
HETATM 25 O O25 AJP . . . BA 5 98.519 177.976 163.204 1 211.07 ? O25 AJP 1601 D 1 
HETATM 26 C C26 AJP . . . BA 5 97.407 177.537 163.994 1 212.47 ? C26 AJP 1601 D 1 
HETATM 27 C C27 AJP . . . BA 5 96.876 178.679 164.859 1 216.43 ? C27 AJP 1601 D 1 
HETATM 28 C C28 AJP . . . BA 5 97.523 178.716 166.237 1 209.1 ? C28 AJP 1601 D 1 
HETATM 29 C C29 AJP . . . BA 5 98.911 178.076 166.202 1 211.04 ? C29 AJP 1601 D 1 
HETATM 30 C C30 AJP . . . BA 5 98.801 176.607 165.771 1 208.46 ? C30 AJP 1601 D 1 
HETATM 31 O O31 AJP . . . BA 5 97.751 176.412 164.813 1 208.88 ? O31 AJP 1601 D 1 
HETATM 32 C C32 AJP . . . BA 5 100.11 176.057 165.206 1 202.66 ? C32 AJP 1601 D 1 
HETATM 33 O O33 AJP . . . BA 5 101.079 175.908 166.25 1 214.61 ? O33 AJP 1601 D 1 
HETATM 34 O O34 AJP . . . BA 5 99.659 178.259 167.418 1 218.23 ? O34 AJP 1601 D 1 
HETATM 35 C C35 AJP . . . BA 5 99.106 177.711 168.614 1 221.62 ? C35 AJP 1601 D 1 
HETATM 36 C C36 AJP . . . BA 5 99.768 178.354 169.827 1 219.11 ? C36 AJP 1601 D 1 
HETATM 37 C C37 AJP . . . BA 5 99.059 177.906 171.105 1 222.77 ? C37 AJP 1601 D 1 
HETATM 38 C C38 AJP . . . BA 5 98.404 176.528 170.964 1 225.31 ? C38 AJP 1601 D 1 
HETATM 39 C C39 AJP . . . BA 5 99.082 175.633 169.92 1 224.87 ? C39 AJP 1601 D 1 
HETATM 40 O O40 AJP . . . BA 5 99.414 176.316 168.699 1 227.96 ? O40 AJP 1601 D 1 
HETATM 41 C C41 AJP . . . BA 5 100.334 174.973 170.495 1 215.49 ? C41 AJP 1601 D 1 
HETATM 42 O O42 AJP . . . BA 5 101.227 174.636 169.427 1 210.88 ? O42 AJP 1601 D 1 
HETATM 43 O O43 AJP . . . BA 5 97.003 176.659 170.677 1 228.87 ? O43 AJP 1601 D 1 
HETATM 44 O O44 AJP . . . BA 5 100.004 177.843 172.169 1 221.4 ? O44 AJP 1601 D 1 
HETATM 45 C C45 AJP . . . BA 5 100.176 179.107 172.804 1 221.41 ? C45 AJP 1601 D 1 
HETATM 46 C C46 AJP . . . BA 5 100.858 178.89 174.149 1 223.88 ? C46 AJP 1601 D 1 
HETATM 47 C C47 AJP . . . BA 5 100.967 180.195 174.93 1 216.97 ? C47 AJP 1601 D 1 
HETATM 48 C C48 AJP . . . BA 5 99.635 180.937 174.964 1 216.78 ? C48 AJP 1601 D 1 
HETATM 49 C C49 AJP . . . BA 5 99.027 181.031 173.569 1 213.13 ? C49 AJP 1601 D 1 
HETATM 50 O O50 AJP . . . BA 5 98.904 179.722 173.013 1 222.63 ? O50 AJP 1601 D 1 
HETATM 51 O O51 AJP . . . BA 5 99.835 182.26 175.474 1 215.74 ? O51 AJP 1601 D 1 
HETATM 52 O O52 AJP . . . BA 5 101.381 179.9 176.269 1 202.08 ? O52 AJP 1601 D 1 
HETATM 53 O O53 AJP . . . BA 5 102.166 178.348 173.931 1 222.29 ? O53 AJP 1601 D 1 
HETATM 54 O O54 AJP . . . BA 5 99.854 179.783 169.727 1 215.12 ? O54 AJP 1601 D 1 
HETATM 55 C C55 AJP . . . BA 5 98.649 180.483 169.41 1 218.83 ? C55 AJP 1601 D 1 
HETATM 56 C C56 AJP . . . BA 5 99.04 181.806 168.755 1 215.89 ? C56 AJP 1601 D 1 
HETATM 57 C C57 AJP . . . BA 5 98.958 182.934 169.772 1 221.81 ? C57 AJP 1601 D 1 
HETATM 58 C C58 AJP . . . BA 5 97.531 183.078 170.288 1 231.68 ? C58 AJP 1601 D 1 
HETATM 59 C C59 AJP . . . BA 5 96.853 181.713 170.419 1 228.33 ? C59 AJP 1601 D 1 
HETATM 60 O O60 AJP . . . BA 5 97.861 180.712 170.583 1 225.12 ? O60 AJP 1601 D 1 
HETATM 61 C C61 AJP . . . BA 5 95.882 181.669 171.597 1 220.24 ? C61 AJP 1601 D 1 
HETATM 62 O O62 AJP . . . BA 5 94.795 182.577 171.376 1 220.74 ? O62 AJP 1601 D 1 
HETATM 63 O O63 AJP . . . BA 5 96.798 183.913 169.382 1 232.46 ? O63 AJP 1601 D 1 
HETATM 64 O O64 AJP . . . BA 5 99.832 182.637 170.86 1 220.5 ? O64 AJP 1601 D 1 
HETATM 65 O O76 AJP . . . BA 5 98.174 182.081 167.644 1 212.27 ? O76 AJP 1601 D 1 
HETATM 66 O O77 AJP . . . BA 5 97.593 180.093 166.601 1 204.84 ? O77 AJP 1601 D 1 
HETATM 67 O O78 AJP . . . BA 5 95.457 178.56 165.01 1 226.91 ? O78 AJP 1601 D 1 
HETATM 68 O O79 AJP . . . BA 5 101.169 177.482 162.06 1 212.55 ? O79 AJP 1601 D 1 
HETATM 69 C C80 AJP . . . BA 5 98.448 178.24 158.787 1 208.58 ? C80 AJP 1601 D 1 
HETATM 70 C C81 AJP . . . BA 5 98.434 177.568 154.939 1 210.45 ? C81 AJP 1601 D 1 
HETATM 71 O O82 AJP . . . BA 5 95.58 175.815 155.285 1 218.28 ? O82 AJP 1601 D 1 
HETATM 72 C C83 AJP . . . BA 5 99.36 177.044 151.803 1 202.08 ? C83 AJP 1601 D 1 
HETATM 73 O O84 AJP . . . BA 5 98.295 173.81 150.767 1 212.51 ? O84 AJP 1601 D 1 
HETATM 74 C C85 AJP . . . BA 5 97.768 173.619 149.446 1 214.83 ? C85 AJP 1601 D 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    73 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           74 
#