data_6JB1 # _model_server_result.job_id 0K9JAQiSkguuaOd7WHQ7uQ _model_server_result.datetime_utc '2024-11-04 22:44:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":1604}' # _entry.id 6JB1 # _exptl.entry_id 6JB1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 36 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JB1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 AA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 RA N N ? 3 VA N N ? 3 WA N N ? 3 XA N N ? 3 YA N N ? 3 ZA N N ? 3 AB N N ? 3 BB N N ? 3 CB N N ? 3 IB N N ? 3 MB N N ? 3 NB N N ? 3 OB N N ? 3 PB N N ? 3 QB N N ? 3 RB N N ? 3 SB N N ? 3 TB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 6 B CYS 6 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 D SG CYS 6 D CYS 6 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 E SG CYS 110 E CYS 110 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 F SG CYS 6 F CYS 6 1_555 F SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 G SG CYS 110 G CYS 110 1_555 G SG CYS 142 G CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 H SG CYS 6 H CYS 6 1_555 H SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # _atom_sites.entry_id 6JB1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 POV A 1 401 4006 POV POV . J 4 AGS A 1 402 401 AGS AGS . K 5 AJP B 1 1601 2002 AJP AJP . L 4 AGS B 1 1602 2501 AGS AGS . M 6 BJX B 1 1603 3001 BJX RPG . N 3 POV B 1 1604 4001 POV POV . O 3 POV B 1 1605 4002 POV POV . P 3 POV B 1 1606 4003 POV POV . Q 3 POV B 1 1607 4004 POV POV . R 3 POV B 1 1608 4005 POV POV . S 3 POV B 1 1609 4007 POV POV . T 3 POV B 1 1610 4008 POV POV . U 3 POV B 1 1611 4009 POV POV . V 7 PTY B 1 1612 4011 PTY PTY . W 7 PTY B 1 1613 4012 PTY PTY . X 7 PTY B 1 1614 4013 PTY PTY . Y 7 PTY B 1 1615 4014 PTY PTY . Z 4 AGS C 1 401 401 AGS AGS . AA 3 POV C 1 402 4006 POV POV . BA 5 AJP D 1 1601 2002 AJP AJP . CA 4 AGS D 1 1602 2501 AGS AGS . DA 6 BJX D 1 1603 3001 BJX RPG . EA 3 POV D 1 1604 4001 POV POV . FA 3 POV D 1 1605 4002 POV POV . GA 3 POV D 1 1606 4003 POV POV . HA 3 POV D 1 1607 4004 POV POV . IA 3 POV D 1 1608 4005 POV POV . JA 3 POV D 1 1609 4007 POV POV . KA 3 POV D 1 1610 4008 POV POV . LA 3 POV D 1 1611 4009 POV POV . MA 7 PTY D 1 1612 4011 PTY PTY . NA 7 PTY D 1 1613 4012 PTY PTY . OA 7 PTY D 1 1614 4013 PTY PTY . PA 7 PTY D 1 1615 4014 PTY PTY . QA 4 AGS E 1 401 401 AGS AGS . RA 3 POV E 1 402 4006 POV POV . SA 5 AJP F 1 1601 2002 AJP AJP . TA 4 AGS F 1 1602 2501 AGS AGS . UA 6 BJX F 1 1603 3001 BJX RPG . VA 3 POV F 1 1604 4001 POV POV . WA 3 POV F 1 1605 4002 POV POV . XA 3 POV F 1 1606 4003 POV POV . YA 3 POV F 1 1607 4004 POV POV . ZA 3 POV F 1 1608 4005 POV POV . AB 3 POV F 1 1609 4007 POV POV . BB 3 POV F 1 1610 4008 POV POV . CB 3 POV F 1 1611 4009 POV POV . DB 7 PTY F 1 1612 4011 PTY PTY . EB 7 PTY F 1 1613 4012 PTY PTY . FB 7 PTY F 1 1614 4013 PTY PTY . GB 7 PTY F 1 1615 4014 PTY PTY . HB 4 AGS G 1 401 401 AGS AGS . IB 3 POV G 1 402 4006 POV POV . JB 5 AJP H 1 1601 2002 AJP AJP . KB 4 AGS H 1 1602 2501 AGS AGS . LB 6 BJX H 1 1603 3001 BJX RPG . MB 3 POV H 1 1604 4001 POV POV . NB 3 POV H 1 1605 4002 POV POV . OB 3 POV H 1 1606 4003 POV POV . PB 3 POV H 1 1607 4004 POV POV . QB 3 POV H 1 1608 4005 POV POV . RB 3 POV H 1 1609 4007 POV POV . SB 3 POV H 1 1610 4008 POV POV . TB 3 POV H 1 1611 4009 POV POV . UB 7 PTY H 1 1612 4011 PTY PTY . VB 7 PTY H 1 1613 4012 PTY PTY . WB 7 PTY H 1 1614 4013 PTY PTY . XB 7 PTY H 1 1615 4014 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . VA 3 164.938 126.408 119.778 1 180.46 ? N POV 1604 F 1 HETATM 2 P P POV . . . VA 3 165.998 128.526 123.424 1 180.46 ? P POV 1604 F 1 HETATM 3 C C1 POV . . . VA 3 166.173 127.838 125.961 1 180.46 ? C1 POV 1604 F 1 HETATM 4 C C2 POV . . . VA 3 165.909 129.027 126.873 1 180.46 ? C2 POV 1604 F 1 HETATM 5 C C3 POV . . . VA 3 167.261 129.556 127.351 1 180.46 ? C3 POV 1604 F 1 HETATM 6 C C11 POV . . . VA 3 164.212 127.147 122.022 1 180.46 ? C11 POV 1604 F 1 HETATM 7 O O11 POV . . . VA 3 166.841 128.268 124.778 1 180.46 ? O11 POV 1604 F 1 HETATM 8 C C12 POV . . . VA 3 164.678 127.581 120.632 1 180.46 ? C12 POV 1604 F 1 HETATM 9 O O12 POV . . . VA 3 165.293 127.148 122.957 1 180.46 ? O12 POV 1604 F 1 HETATM 10 C C13 POV . . . VA 3 163.776 125.505 119.802 1 180.46 ? C13 POV 1604 F 1 HETATM 11 O O13 POV . . . VA 3 164.917 129.548 123.7 1 180.46 ? O13 POV 1604 F 1 HETATM 12 C C14 POV . . . VA 3 165.169 126.85 118.394 1 180.46 ? C14 POV 1604 F 1 HETATM 13 O O14 POV . . . VA 3 166.935 129.018 122.338 1 180.46 ? O14 POV 1604 F 1 HETATM 14 C C15 POV . . . VA 3 166.124 125.684 120.26 1 180.46 ? C15 POV 1604 F 1 HETATM 15 C C21 POV . . . VA 3 163.679 128.699 127.735 1 180.46 ? C21 POV 1604 F 1 HETATM 16 O O21 POV . . . VA 3 165.113 128.59 127.978 1 180.46 ? O21 POV 1604 F 1 HETATM 17 C C22 POV . . . VA 3 162.85 129.729 128.472 1 180.46 ? C22 POV 1604 F 1 HETATM 18 O O22 POV . . . VA 3 163.148 127.94 126.937 1 180.46 ? O22 POV 1604 F 1 HETATM 19 C C23 POV . . . VA 3 163.743 130.661 129.285 1 180.46 ? C23 POV 1604 F 1 HETATM 20 C C24 POV . . . VA 3 163.587 130.431 130.78 1 180.46 ? C24 POV 1604 F 1 HETATM 21 C C25 POV . . . VA 3 164.303 131.514 131.576 1 180.46 ? C25 POV 1604 F 1 HETATM 22 C C26 POV . . . VA 3 163.875 131.476 133.037 1 180.46 ? C26 POV 1604 F 1 HETATM 23 C C27 POV . . . VA 3 164.688 132.462 133.862 1 180.46 ? C27 POV 1604 F 1 HETATM 24 C C28 POV . . . VA 3 164.168 132.506 135.291 1 180.46 ? C28 POV 1604 F 1 HETATM 25 C C29 POV . . . VA 3 162.702 132.863 135.26 1 180.46 ? C29 POV 1604 F 1 HETATM 26 C C31 POV . . . VA 3 167.337 130.037 129.821 1 180.46 ? C31 POV 1604 F 1 HETATM 27 O O31 POV . . . VA 3 167.119 130.469 128.442 1 180.46 ? O31 POV 1604 F 1 HETATM 28 C C32 POV . . . VA 3 168.064 130.951 130.781 1 180.46 ? C32 POV 1604 F 1 HETATM 29 O O32 POV . . . VA 3 166.929 128.946 130.197 1 180.46 ? O32 POV 1604 F 1 HETATM 30 C C33 POV . . . VA 3 168.153 130.297 132.155 1 180.46 ? C33 POV 1604 F 1 HETATM 31 C C34 POV . . . VA 3 168.722 131.274 133.175 1 180.46 ? C34 POV 1604 F 1 HETATM 32 C C35 POV . . . VA 3 168.257 130.917 134.58 1 180.46 ? C35 POV 1604 F 1 HETATM 33 C C36 POV . . . VA 3 168.144 132.178 135.426 1 180.46 ? C36 POV 1604 F 1 HETATM 34 C C37 POV . . . VA 3 167.486 131.888 136.768 1 180.46 ? C37 POV 1604 F 1 HETATM 35 C C38 POV . . . VA 3 167.201 133.184 137.514 1 180.46 ? C38 POV 1604 F 1 HETATM 36 C C39 POV . . . VA 3 166.707 132.896 138.925 1 180.46 ? C39 POV 1604 F 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 261 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 38 _model_server_stats.element_count 36 #