data_6JB1 # _model_server_result.job_id qd1b-ZU9PfRljSEDPNfcyA _model_server_result.datetime_utc '2025-08-31 18:20:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":1607}' # _entry.id 6JB1 # _exptl.entry_id 6JB1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 36 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JB1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 AA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 RA N N ? 3 VA N N ? 3 WA N N ? 3 XA N N ? 3 YA N N ? 3 ZA N N ? 3 AB N N ? 3 BB N N ? 3 CB N N ? 3 IB N N ? 3 MB N N ? 3 NB N N ? 3 OB N N ? 3 PB N N ? 3 QB N N ? 3 RB N N ? 3 SB N N ? 3 TB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 6 B CYS 6 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 D SG CYS 6 D CYS 6 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 E SG CYS 110 E CYS 110 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 F SG CYS 6 F CYS 6 1_555 F SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 G SG CYS 110 G CYS 110 1_555 G SG CYS 142 G CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 H SG CYS 6 H CYS 6 1_555 H SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 565 n n N C13 POV sing 566 n n N C14 POV sing 567 n n N C15 POV sing 568 n n P O11 POV sing 569 n n P O12 POV sing 570 n n P O13 POV sing 571 n n P O14 POV doub 572 n n C1 C2 POV sing 573 n n C1 O11 POV sing 574 n n C1 H1 POV sing 575 n n C1 H1A POV sing 576 n n C2 C3 POV sing 577 n n C2 O21 POV sing 578 n n C2 H2 POV sing 579 n n C3 O31 POV sing 580 n n C3 H3 POV sing 581 n n C3 H3A POV sing 582 n n C210 C211 POV sing 583 n n C210 C29 POV doub 584 z n C210 H210 POV sing 585 n n C310 C311 POV sing 586 n n C310 C39 POV sing 587 n n C310 H310 POV sing 588 n n C310 H31A POV sing 589 n n C11 C12 POV sing 590 n n C11 O12 POV sing 591 n n C11 H11 POV sing 592 n n C11 H11A POV sing 593 n n C211 C212 POV sing 594 n n C211 H211 POV sing 595 n n C211 H21A POV sing 596 n n C311 C312 POV sing 597 n n C311 H311 POV sing 598 n n C311 H31B POV sing 599 n n C12 H12 POV sing 600 n n C12 H12A POV sing 601 n n C212 C213 POV sing 602 n n C212 H212 POV sing 603 n n C212 H21B POV sing 604 n n C312 C313 POV sing 605 n n C312 H312 POV sing 606 n n C312 H31C POV sing 607 n n C13 H13 POV sing 608 n n C13 H13A POV sing 609 n n C13 H13B POV sing 610 n n C213 C214 POV sing 611 n n C213 H213 POV sing 612 n n C213 H21C POV sing 613 n n C313 C314 POV sing 614 n n C313 H313 POV sing 615 n n C313 H31D POV sing 616 n n C14 H14 POV sing 617 n n C14 H14A POV sing 618 n n C14 H14B POV sing 619 n n C214 C215 POV sing 620 n n C214 H214 POV sing 621 n n C214 H21D POV sing 622 n n C314 C315 POV sing 623 n n C314 H314 POV sing 624 n n C314 H31E POV sing 625 n n C15 H15 POV sing 626 n n C15 H15A POV sing 627 n n C15 H15B POV sing 628 n n C215 C216 POV sing 629 n n C215 H215 POV sing 630 n n C215 H21E POV sing 631 n n C315 C316 POV sing 632 n n C315 H315 POV sing 633 n n C315 H31F POV sing 634 n n C216 C217 POV sing 635 n n C216 H216 POV sing 636 n n C216 H21F POV sing 637 n n C316 H316 POV sing 638 n n C316 H31G POV sing 639 n n C316 H31H POV sing 640 n n C217 C218 POV sing 641 n n C217 H217 POV sing 642 n n C217 H21G POV sing 643 n n C218 H218 POV sing 644 n n C218 H21H POV sing 645 n n C218 H21J POV sing 646 n n C21 O21 POV sing 647 n n C21 C22 POV sing 648 n n C21 O22 POV doub 649 n n C22 C23 POV sing 650 n n C22 H22 POV sing 651 n n C22 H22A POV sing 652 n n C23 C24 POV sing 653 n n C23 H23 POV sing 654 n n C23 H23A POV sing 655 n n C24 C25 POV sing 656 n n C24 H24 POV sing 657 n n C24 H24A POV sing 658 n n C25 C26 POV sing 659 n n C25 H25 POV sing 660 n n C25 H25A POV sing 661 n n C26 C27 POV sing 662 n n C26 H26 POV sing 663 n n C26 H26A POV sing 664 n n C27 C28 POV sing 665 n n C27 H27 POV sing 666 n n C27 H27A POV sing 667 n n C28 C29 POV sing 668 n n C28 H28 POV sing 669 n n C28 H28A POV sing 670 n n C29 H29 POV sing 671 n n C31 O31 POV sing 672 n n C31 C32 POV sing 673 n n C31 O32 POV doub 674 n n C32 C33 POV sing 675 n n C32 H32 POV sing 676 n n C32 H32A POV sing 677 n n C33 C34 POV sing 678 n n C33 H33 POV sing 679 n n C33 H33A POV sing 680 n n C34 C35 POV sing 681 n n C34 H34 POV sing 682 n n C34 H34A POV sing 683 n n C35 C36 POV sing 684 n n C35 H35 POV sing 685 n n C35 H35A POV sing 686 n n C36 C37 POV sing 687 n n C36 H36 POV sing 688 n n C36 H36A POV sing 689 n n C37 C38 POV sing 690 n n C37 H37 POV sing 691 n n C37 H37A POV sing 692 n n C38 C39 POV sing 693 n n C38 H38 POV sing 694 n n C38 H38A POV sing 695 n n C39 H39 POV sing 696 n n C39 H39A POV sing 697 n n # _atom_sites.entry_id 6JB1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 POV A 1 401 4006 POV POV . J 4 AGS A 1 402 401 AGS AGS . K 5 AJP B 1 1601 2002 AJP AJP . L 4 AGS B 1 1602 2501 AGS AGS . M 6 BJX B 1 1603 3001 BJX RPG . N 3 POV B 1 1604 4001 POV POV . O 3 POV B 1 1605 4002 POV POV . P 3 POV B 1 1606 4003 POV POV . Q 3 POV B 1 1607 4004 POV POV . R 3 POV B 1 1608 4005 POV POV . S 3 POV B 1 1609 4007 POV POV . T 3 POV B 1 1610 4008 POV POV . U 3 POV B 1 1611 4009 POV POV . V 7 PTY B 1 1612 4011 PTY PTY . W 7 PTY B 1 1613 4012 PTY PTY . X 7 PTY B 1 1614 4013 PTY PTY . Y 7 PTY B 1 1615 4014 PTY PTY . Z 4 AGS C 1 401 401 AGS AGS . AA 3 POV C 1 402 4006 POV POV . BA 5 AJP D 1 1601 2002 AJP AJP . CA 4 AGS D 1 1602 2501 AGS AGS . DA 6 BJX D 1 1603 3001 BJX RPG . EA 3 POV D 1 1604 4001 POV POV . FA 3 POV D 1 1605 4002 POV POV . GA 3 POV D 1 1606 4003 POV POV . HA 3 POV D 1 1607 4004 POV POV . IA 3 POV D 1 1608 4005 POV POV . JA 3 POV D 1 1609 4007 POV POV . KA 3 POV D 1 1610 4008 POV POV . LA 3 POV D 1 1611 4009 POV POV . MA 7 PTY D 1 1612 4011 PTY PTY . NA 7 PTY D 1 1613 4012 PTY PTY . OA 7 PTY D 1 1614 4013 PTY PTY . PA 7 PTY D 1 1615 4014 PTY PTY . QA 4 AGS E 1 401 401 AGS AGS . RA 3 POV E 1 402 4006 POV POV . SA 5 AJP F 1 1601 2002 AJP AJP . TA 4 AGS F 1 1602 2501 AGS AGS . UA 6 BJX F 1 1603 3001 BJX RPG . VA 3 POV F 1 1604 4001 POV POV . WA 3 POV F 1 1605 4002 POV POV . XA 3 POV F 1 1606 4003 POV POV . YA 3 POV F 1 1607 4004 POV POV . ZA 3 POV F 1 1608 4005 POV POV . AB 3 POV F 1 1609 4007 POV POV . BB 3 POV F 1 1610 4008 POV POV . CB 3 POV F 1 1611 4009 POV POV . DB 7 PTY F 1 1612 4011 PTY PTY . EB 7 PTY F 1 1613 4012 PTY PTY . FB 7 PTY F 1 1614 4013 PTY PTY . GB 7 PTY F 1 1615 4014 PTY PTY . HB 4 AGS G 1 401 401 AGS AGS . IB 3 POV G 1 402 4006 POV POV . JB 5 AJP H 1 1601 2002 AJP AJP . KB 4 AGS H 1 1602 2501 AGS AGS . LB 6 BJX H 1 1603 3001 BJX RPG . MB 3 POV H 1 1604 4001 POV POV . NB 3 POV H 1 1605 4002 POV POV . OB 3 POV H 1 1606 4003 POV POV . PB 3 POV H 1 1607 4004 POV POV . QB 3 POV H 1 1608 4005 POV POV . RB 3 POV H 1 1609 4007 POV POV . SB 3 POV H 1 1610 4008 POV POV . TB 3 POV H 1 1611 4009 POV POV . UB 7 PTY H 1 1612 4011 PTY PTY . VB 7 PTY H 1 1613 4012 PTY PTY . WB 7 PTY H 1 1614 4013 PTY PTY . XB 7 PTY H 1 1615 4014 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . PB 3 196.835 173.617 129.477 1 158.09 ? N POV 1607 H 1 HETATM 2 P P POV . . . PB 3 194.555 169.612 128.625 1 158.09 ? P POV 1607 H 1 HETATM 3 C C1 POV . . . PB 3 193.365 168.612 130.784 1 158.09 ? C1 POV 1607 H 1 HETATM 4 C C2 POV . . . PB 3 193.381 168.889 132.283 1 158.09 ? C2 POV 1607 H 1 HETATM 5 C C3 POV . . . PB 3 194.838 169.018 132.72 1 158.09 ? C3 POV 1607 H 1 HETATM 6 C C210 POV . . . PB 3 191.613 171.297 143.822 1 158.09 ? C210 POV 1607 H 1 HETATM 7 C C11 POV . . . PB 3 196.694 171.162 129.117 1 158.09 ? C11 POV 1607 H 1 HETATM 8 O O11 POV . . . PB 3 194.515 169.222 130.195 1 158.09 ? O11 POV 1607 H 1 HETATM 9 C C211 POV . . . PB 3 190.428 172.228 143.983 1 158.09 ? C211 POV 1607 H 1 HETATM 10 C C12 POV . . . PB 3 195.923 172.455 129.396 1 158.09 ? C12 POV 1607 H 1 HETATM 11 O O12 POV . . . PB 3 195.977 170.283 128.24 1 158.09 ? O12 POV 1607 H 1 HETATM 12 C C212 POV . . . PB 3 190.551 172.988 145.304 1 158.09 ? C212 POV 1607 H 1 HETATM 13 C C13 POV . . . PB 3 197.359 173.936 128.135 1 158.09 ? C13 POV 1607 H 1 HETATM 14 O O13 POV . . . PB 3 194.363 168.356 127.805 1 158.09 ? O13 POV 1607 H 1 HETATM 15 C C213 POV . . . PB 3 189.408 173.978 145.5 1 158.09 ? C213 POV 1607 H 1 HETATM 16 C C14 POV . . . PB 3 196.108 174.785 130.002 1 158.09 ? C14 POV 1607 H 1 HETATM 17 O O14 POV . . . PB 3 193.447 170.599 128.309 1 158.09 ? O14 POV 1607 H 1 HETATM 18 C C214 POV . . . PB 3 189.412 174.57 146.904 1 158.09 ? C214 POV 1607 H 1 HETATM 19 C C15 POV . . . PB 3 197.958 173.326 130.388 1 158.09 ? C15 POV 1607 H 1 HETATM 20 C C21 POV . . . PB 3 192.195 168.174 134.313 1 158.09 ? C21 POV 1607 H 1 HETATM 21 O O21 POV . . . PB 3 192.708 167.836 132.982 1 158.09 ? O21 POV 1607 H 1 HETATM 22 C C22 POV . . . PB 3 191.986 169.61 134.748 1 158.09 ? C22 POV 1607 H 1 HETATM 23 O O22 POV . . . PB 3 191.916 167.264 135.085 1 158.09 ? O22 POV 1607 H 1 HETATM 24 C C23 POV . . . PB 3 192.049 169.698 136.272 1 158.09 ? C23 POV 1607 H 1 HETATM 25 C C24 POV . . . PB 3 191.81 171.121 136.774 1 158.09 ? C24 POV 1607 H 1 HETATM 26 C C25 POV . . . PB 3 191.953 171.211 138.293 1 158.09 ? C25 POV 1607 H 1 HETATM 27 C C26 POV . . . PB 3 190.822 170.484 139.015 1 158.09 ? C26 POV 1607 H 1 HETATM 28 C C27 POV . . . PB 3 191.208 170.128 140.448 1 158.09 ? C27 POV 1607 H 1 HETATM 29 C C28 POV . . . PB 3 191.447 171.358 141.322 1 158.09 ? C28 POV 1607 H 1 HETATM 30 C C29 POV . . . PB 3 192.073 170.913 142.628 1 158.09 ? C29 POV 1607 H 1 HETATM 31 C C31 POV . . . PB 3 196.167 170.577 134.18 1 158.09 ? C31 POV 1607 H 1 HETATM 32 O O31 POV . . . PB 3 194.983 170.267 133.398 1 158.09 ? O31 POV 1607 H 1 HETATM 33 C C32 POV . . . PB 3 196.219 170.297 135.678 1 158.09 ? C32 POV 1607 H 1 HETATM 34 O O32 POV . . . PB 3 197.115 171.078 133.59 1 158.09 ? O32 POV 1607 H 1 HETATM 35 C C33 POV . . . PB 3 195.705 168.894 136.014 1 158.09 ? C33 POV 1607 H 1 HETATM 36 C C34 POV . . . PB 3 196.274 168.332 137.312 1 158.09 ? C34 POV 1607 H 1 HETATM 37 C C35 POV . . . PB 3 195.803 169.133 138.519 1 158.09 ? C35 POV 1607 H 1 HETATM 38 C C36 POV . . . PB 3 196.313 168.529 139.823 1 158.09 ? C36 POV 1607 H 1 HETATM 39 C C37 POV . . . PB 3 195.866 169.351 141.027 1 158.09 ? C37 POV 1607 H 1 HETATM 40 C C38 POV . . . PB 3 196.331 170.797 140.908 1 158.09 ? C38 POV 1607 H 1 HETATM 41 C C39 POV . . . PB 3 195.837 171.631 142.085 1 158.09 ? C39 POV 1607 H 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #