data_6JB1
#
_model_server_result.job_id            nMbfxb5Y9vKTRFTe20ZAVA 
_model_server_result.datetime_utc      '2025-08-31 18:23:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jb1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EB","auth_seq_id":1613}' 
#
_entry.id    6JB1 
#
_exptl.entry_id    6JB1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JB1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 V N N 
? 7 W N N 
? 7 X N N 
? 7 Y N N 
? 7 MA N N 
? 7 NA N N 
? 7 OA N N 
? 7 PA N N 
? 7 DB N N 
? 7 EB N N 
? 7 FB N N 
? 7 GB N N 
? 7 UB N N 
? 7 VB N N 
? 7 WB N N 
? 7 XB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 B SG CYS 6 B CYS 6 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 110 C CYS 110 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 D SG CYS 6 D CYS 6 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 110 E CYS 110 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf6 F SG CYS 6 F CYS 6 1_555 F SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 G SG CYS 110 G CYS 110 1_555 G SG CYS 142 G CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf8 H SG CYS 6 H CYS 6 1_555 H SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PTY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 PTY sing 715 n n 
C1 C6 PTY sing 716 n n 
C1 HC11 PTY sing 717 n n 
C1 HC12 PTY sing 718 n n 
C2 C3 PTY sing 719 n n 
C2 N1 PTY sing 720 n n 
C2 HC21 PTY sing 721 n n 
C2 HC22 PTY sing 722 n n 
C3 O11 PTY sing 723 n n 
C3 HC31 PTY sing 724 n n 
C3 HC32 PTY sing 725 n n 
O4 C30 PTY sing 726 n n 
C5 C6 PTY sing 727 n n 
C5 O14 PTY sing 728 n n 
C5 HC51 PTY sing 729 n n 
C5 HC52 PTY sing 730 n n 
C6 O7 PTY sing 731 n n 
C6 HC6 PTY sing 732 n n 
O7 C8 PTY sing 733 n n 
C8 O10 PTY doub 734 n n 
C8 C11 PTY sing 735 n n 
C11 C12 PTY sing 736 n n 
C11 H111 PTY sing 737 n n 
C11 H112 PTY sing 738 n n 
C12 C13 PTY sing 739 n n 
C12 H121 PTY sing 740 n n 
C12 H122 PTY sing 741 n n 
C13 C14 PTY sing 742 n n 
C13 H131 PTY sing 743 n n 
C13 H132 PTY sing 744 n n 
C14 C15 PTY sing 745 n n 
C14 H141 PTY sing 746 n n 
C14 H142 PTY sing 747 n n 
C15 C16 PTY sing 748 n n 
C15 H151 PTY sing 749 n n 
C15 H152 PTY sing 750 n n 
C16 C17 PTY sing 751 n n 
C16 H161 PTY sing 752 n n 
C16 H162 PTY sing 753 n n 
C17 C18 PTY sing 754 n n 
C17 H171 PTY sing 755 n n 
C17 H172 PTY sing 756 n n 
C18 C19 PTY sing 757 n n 
C18 H181 PTY sing 758 n n 
C18 H182 PTY sing 759 n n 
C19 C20 PTY sing 760 n n 
C19 H191 PTY sing 761 n n 
C19 H192 PTY sing 762 n n 
C20 C21 PTY sing 763 n n 
C20 H201 PTY sing 764 n n 
C20 H202 PTY sing 765 n n 
C21 C22 PTY sing 766 n n 
C21 H211 PTY sing 767 n n 
C21 H212 PTY sing 768 n n 
C22 C23 PTY sing 769 n n 
C22 H221 PTY sing 770 n n 
C22 H222 PTY sing 771 n n 
C23 C24 PTY sing 772 n n 
C23 H231 PTY sing 773 n n 
C23 H232 PTY sing 774 n n 
C24 C25 PTY sing 775 n n 
C24 H241 PTY sing 776 n n 
C24 H242 PTY sing 777 n n 
C25 C26 PTY sing 778 n n 
C25 H251 PTY sing 779 n n 
C25 H252 PTY sing 780 n n 
C26 C27 PTY sing 781 n n 
C26 H261 PTY sing 782 n n 
C26 H262 PTY sing 783 n n 
C27 C28 PTY sing 784 n n 
C27 H271 PTY sing 785 n n 
C27 H272 PTY sing 786 n n 
C28 C29 PTY sing 787 n n 
C28 H281 PTY sing 788 n n 
C28 H282 PTY sing 789 n n 
C29 H291 PTY sing 790 n n 
C29 H292 PTY sing 791 n n 
C29 H293 PTY sing 792 n n 
C30 C31 PTY sing 793 n n 
C30 O30 PTY doub 794 n n 
C31 C32 PTY sing 795 n n 
C31 H311 PTY sing 796 n n 
C31 H312 PTY sing 797 n n 
C32 C33 PTY sing 798 n n 
C32 H321 PTY sing 799 n n 
C32 H322 PTY sing 800 n n 
C33 C34 PTY sing 801 n n 
C33 H331 PTY sing 802 n n 
C33 H332 PTY sing 803 n n 
C34 C35 PTY sing 804 n n 
C34 H341 PTY sing 805 n n 
C34 H342 PTY sing 806 n n 
C35 C36 PTY sing 807 n n 
C35 H351 PTY sing 808 n n 
C35 H352 PTY sing 809 n n 
C36 C37 PTY sing 810 n n 
C36 H361 PTY sing 811 n n 
C36 H362 PTY sing 812 n n 
C37 C38 PTY sing 813 n n 
C37 H371 PTY sing 814 n n 
C37 H372 PTY sing 815 n n 
C38 C39 PTY sing 816 n n 
C38 H381 PTY sing 817 n n 
C38 H382 PTY sing 818 n n 
C39 C40 PTY sing 819 n n 
C39 H391 PTY sing 820 n n 
C39 H392 PTY sing 821 n n 
C40 C41 PTY sing 822 n n 
C40 H401 PTY sing 823 n n 
C40 H402 PTY sing 824 n n 
C41 C42 PTY sing 825 n n 
C41 H411 PTY sing 826 n n 
C41 H412 PTY sing 827 n n 
C42 C43 PTY sing 828 n n 
C42 H421 PTY sing 829 n n 
C42 H422 PTY sing 830 n n 
C43 C44 PTY sing 831 n n 
C43 H431 PTY sing 832 n n 
C43 H432 PTY sing 833 n n 
C44 H441 PTY sing 834 n n 
C44 H442 PTY sing 835 n n 
C44 H443 PTY sing 836 n n 
P1 O11 PTY sing 837 n n 
P1 O12 PTY sing 838 n n 
P1 O13 PTY doub 839 n n 
P1 O14 PTY sing 840 n n 
O12 H12O PTY sing 841 n n 
N1 HN11 PTY sing 842 n n 
N1 HN12 PTY sing 843 n n 
#
_atom_sites.entry_id                     6JB1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 POV A 1 401 4006 POV POV . 
J 4 AGS A 1 402 401 AGS AGS . 
K 5 AJP B 1 1601 2002 AJP AJP . 
L 4 AGS B 1 1602 2501 AGS AGS . 
M 6 BJX B 1 1603 3001 BJX RPG . 
N 3 POV B 1 1604 4001 POV POV . 
O 3 POV B 1 1605 4002 POV POV . 
P 3 POV B 1 1606 4003 POV POV . 
Q 3 POV B 1 1607 4004 POV POV . 
R 3 POV B 1 1608 4005 POV POV . 
S 3 POV B 1 1609 4007 POV POV . 
T 3 POV B 1 1610 4008 POV POV . 
U 3 POV B 1 1611 4009 POV POV . 
V 7 PTY B 1 1612 4011 PTY PTY . 
W 7 PTY B 1 1613 4012 PTY PTY . 
X 7 PTY B 1 1614 4013 PTY PTY . 
Y 7 PTY B 1 1615 4014 PTY PTY . 
Z 4 AGS C 1 401 401 AGS AGS . 
AA 3 POV C 1 402 4006 POV POV . 
BA 5 AJP D 1 1601 2002 AJP AJP . 
CA 4 AGS D 1 1602 2501 AGS AGS . 
DA 6 BJX D 1 1603 3001 BJX RPG . 
EA 3 POV D 1 1604 4001 POV POV . 
FA 3 POV D 1 1605 4002 POV POV . 
GA 3 POV D 1 1606 4003 POV POV . 
HA 3 POV D 1 1607 4004 POV POV . 
IA 3 POV D 1 1608 4005 POV POV . 
JA 3 POV D 1 1609 4007 POV POV . 
KA 3 POV D 1 1610 4008 POV POV . 
LA 3 POV D 1 1611 4009 POV POV . 
MA 7 PTY D 1 1612 4011 PTY PTY . 
NA 7 PTY D 1 1613 4012 PTY PTY . 
OA 7 PTY D 1 1614 4013 PTY PTY . 
PA 7 PTY D 1 1615 4014 PTY PTY . 
QA 4 AGS E 1 401 401 AGS AGS . 
RA 3 POV E 1 402 4006 POV POV . 
SA 5 AJP F 1 1601 2002 AJP AJP . 
TA 4 AGS F 1 1602 2501 AGS AGS . 
UA 6 BJX F 1 1603 3001 BJX RPG . 
VA 3 POV F 1 1604 4001 POV POV . 
WA 3 POV F 1 1605 4002 POV POV . 
XA 3 POV F 1 1606 4003 POV POV . 
YA 3 POV F 1 1607 4004 POV POV . 
ZA 3 POV F 1 1608 4005 POV POV . 
AB 3 POV F 1 1609 4007 POV POV . 
BB 3 POV F 1 1610 4008 POV POV . 
CB 3 POV F 1 1611 4009 POV POV . 
DB 7 PTY F 1 1612 4011 PTY PTY . 
EB 7 PTY F 1 1613 4012 PTY PTY . 
FB 7 PTY F 1 1614 4013 PTY PTY . 
GB 7 PTY F 1 1615 4014 PTY PTY . 
HB 4 AGS G 1 401 401 AGS AGS . 
IB 3 POV G 1 402 4006 POV POV . 
JB 5 AJP H 1 1601 2002 AJP AJP . 
KB 4 AGS H 1 1602 2501 AGS AGS . 
LB 6 BJX H 1 1603 3001 BJX RPG . 
MB 3 POV H 1 1604 4001 POV POV . 
NB 3 POV H 1 1605 4002 POV POV . 
OB 3 POV H 1 1606 4003 POV POV . 
PB 3 POV H 1 1607 4004 POV POV . 
QB 3 POV H 1 1608 4005 POV POV . 
RB 3 POV H 1 1609 4007 POV POV . 
SB 3 POV H 1 1610 4008 POV POV . 
TB 3 POV H 1 1611 4009 POV POV . 
UB 7 PTY H 1 1612 4011 PTY PTY . 
VB 7 PTY H 1 1613 4012 PTY PTY . 
WB 7 PTY H 1 1614 4013 PTY PTY . 
XB 7 PTY H 1 1615 4014 PTY PTY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTY . . . EB 7 145.946 121.91 155.479 1 161.22 ? C1 PTY 1613 F 1 
HETATM 2 C C2 PTY . . . EB 7 146.224 122.743 162.252 1 161.22 ? C2 PTY 1613 F 1 
HETATM 3 C C3 PTY . . . EB 7 146.278 121.32 161.707 1 161.22 ? C3 PTY 1613 F 1 
HETATM 4 O O4 PTY . . . EB 7 145.549 120.612 155.03 1 161.22 ? O4 PTY 1613 F 1 
HETATM 5 C C5 PTY . . . EB 7 147.943 122.429 156.913 1 161.22 ? C5 PTY 1613 F 1 
HETATM 6 C C6 PTY . . . EB 7 147.47 122.022 155.515 1 161.22 ? C6 PTY 1613 F 1 
HETATM 7 O O7 PTY . . . EB 7 147.873 123.036 154.588 1 161.22 ? O7 PTY 1613 F 1 
HETATM 8 C C8 PTY . . . EB 7 148.866 122.606 153.603 1 161.22 ? C8 PTY 1613 F 1 
HETATM 9 O O10 PTY . . . EB 7 150.034 122.472 153.948 1 161.22 ? O10 PTY 1613 F 1 
HETATM 10 C C11 PTY . . . EB 7 148.449 122.335 152.168 1 161.22 ? C11 PTY 1613 F 1 
HETATM 11 C C12 PTY . . . EB 7 149.51 122.837 151.191 1 161.22 ? C12 PTY 1613 F 1 
HETATM 12 C C13 PTY . . . EB 7 148.965 122.977 149.772 1 161.22 ? C13 PTY 1613 F 1 
HETATM 13 C C14 PTY . . . EB 7 148.201 121.736 149.328 1 161.22 ? C14 PTY 1613 F 1 
HETATM 14 C C15 PTY . . . EB 7 147.627 121.925 147.929 1 161.22 ? C15 PTY 1613 F 1 
HETATM 15 C C30 PTY . . . EB 7 145.533 120.252 153.611 1 161.22 ? C30 PTY 1613 F 1 
HETATM 16 C C31 PTY . . . EB 7 144.309 120.515 152.753 1 161.22 ? C31 PTY 1613 F 1 
HETATM 17 O O30 PTY . . . EB 7 146.521 119.719 153.115 1 161.22 ? O30 PTY 1613 F 1 
HETATM 18 C C32 PTY . . . EB 7 144.27 121.955 152.243 1 161.22 ? C32 PTY 1613 F 1 
HETATM 19 C C33 PTY . . . EB 7 143.23 122.134 151.138 1 161.22 ? C33 PTY 1613 F 1 
HETATM 20 C C34 PTY . . . EB 7 143.68 121.481 149.832 1 161.22 ? C34 PTY 1613 F 1 
HETATM 21 C C35 PTY . . . EB 7 142.768 121.857 148.667 1 161.22 ? C35 PTY 1613 F 1 
HETATM 22 P P1 PTY . . . EB 7 146.589 121.677 159.1 1 161.22 ? P1 PTY 1613 F 1 
HETATM 23 O O11 PTY . . . EB 7 147.134 121.256 160.562 1 161.22 ? O11 PTY 1613 F 1 
HETATM 24 O O12 PTY . . . EB 7 145.355 120.852 158.79 1 161.22 ? O12 PTY 1613 F 1 
HETATM 25 O O13 PTY . . . EB 7 146.254 123.151 159.162 1 161.22 ? O13 PTY 1613 F 1 
HETATM 26 O O14 PTY . . . EB 7 147.681 121.44 157.921 1 161.22 ? O14 PTY 1613 F 1 
HETATM 27 N N1 PTY . . . EB 7 145.138 122.857 163.237 1 161.22 ? N1 PTY 1613 F 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           391 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#