data_6JB3
#
_model_server_result.job_id            GN2VOmCYNhVxmhz2YRnWUQ 
_model_server_result.datetime_utc      '2024-12-26 13:27:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jb3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2002}' 
#
_entry.id    6JB3 
#
_exptl.entry_id    6JB3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1229.312 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Digitonin 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JB3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JB3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C56 H92 O29' 
_chem_comp.formula_weight    1229.312 
_chem_comp.id                AJP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Digitonin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 AJP sing 1 n n 
C02 C85 AJP sing 2 n n 
C02 C03 AJP sing 3 n n 
C85 O84 AJP sing 4 n n 
C03 C04 AJP sing 5 n n 
O84 C05 AJP sing 6 n n 
C05 C04 AJP sing 7 n n 
C05 O09 AJP sing 8 n n 
C05 C06 AJP sing 9 n n 
O09 C08 AJP sing 10 n n 
C08 C10 AJP sing 11 n n 
C08 C07 AJP sing 12 n n 
C83 C06 AJP sing 13 n n 
C06 C07 AJP sing 14 n n 
C10 O82 AJP sing 15 n n 
C10 C11 AJP sing 16 n n 
C07 C12 AJP sing 17 n n 
C11 C12 AJP sing 18 n n 
C11 C16 AJP sing 19 n n 
C12 C81 AJP sing 20 n n 
C12 C13 AJP sing 21 n n 
C17 C16 AJP sing 22 n n 
C17 C18 AJP sing 23 n n 
C13 C14 AJP sing 24 n n 
C16 C15 AJP sing 25 n n 
C15 C14 AJP sing 26 n n 
C15 C20 AJP sing 27 n n 
C18 C19 AJP sing 28 n n 
C19 C20 AJP sing 29 n n 
C19 C24 AJP sing 30 n n 
C20 C21 AJP sing 31 n n 
C20 C80 AJP sing 32 n n 
C21 C22 AJP sing 33 n n 
C24 C23 AJP sing 34 n n 
O33 C32 AJP sing 35 n n 
C23 C22 AJP sing 36 n n 
C23 O25 AJP sing 37 n n 
C32 C30 AJP sing 38 n n 
C22 O79 AJP sing 39 n n 
C30 O31 AJP sing 40 n n 
C30 C29 AJP sing 41 n n 
O31 C26 AJP sing 42 n n 
C26 O25 AJP sing 43 n n 
C26 C27 AJP sing 44 n n 
C29 C28 AJP sing 45 n n 
C29 O34 AJP sing 46 n n 
C41 C39 AJP sing 47 n n 
C41 O42 AJP sing 48 n n 
C28 C27 AJP sing 49 n n 
C28 O77 AJP sing 50 n n 
C27 O78 AJP sing 51 n n 
O40 C39 AJP sing 52 n n 
O40 C35 AJP sing 53 n n 
C39 C38 AJP sing 54 n n 
O34 C35 AJP sing 55 n n 
C35 C36 AJP sing 56 n n 
C38 O43 AJP sing 57 n n 
C38 C37 AJP sing 58 n n 
C36 C37 AJP sing 59 n n 
C36 O54 AJP sing 60 n n 
C37 O44 AJP sing 61 n n 
O54 C55 AJP sing 62 n n 
O76 C56 AJP sing 63 n n 
O50 C49 AJP sing 64 n n 
O50 C45 AJP sing 65 n n 
C56 C55 AJP sing 66 n n 
C56 C57 AJP sing 67 n n 
O44 C45 AJP sing 68 n n 
C55 O60 AJP sing 69 n n 
C49 C48 AJP sing 70 n n 
C45 C46 AJP sing 71 n n 
O60 C59 AJP sing 72 n n 
O63 C58 AJP sing 73 n n 
O75 C66 AJP sing 74 n n 
O64 C57 AJP sing 75 n n 
O64 C65 AJP sing 76 n n 
C57 C58 AJP sing 77 n n 
O62 C61 AJP sing 78 n n 
C48 O51 AJP sing 79 n n 
C48 C47 AJP sing 80 n n 
C58 C59 AJP sing 81 n n 
C59 C61 AJP sing 82 n n 
C46 C47 AJP sing 83 n n 
C46 O53 AJP sing 84 n n 
C66 C65 AJP sing 85 n n 
C66 C67 AJP sing 86 n n 
C65 O70 AJP sing 87 n n 
C47 O52 AJP sing 88 n n 
O74 C67 AJP sing 89 n n 
C67 C68 AJP sing 90 n n 
O70 C69 AJP sing 91 n n 
C68 C69 AJP sing 92 n n 
C68 O73 AJP sing 93 n n 
C69 C71 AJP sing 94 n n 
C71 O72 AJP sing 95 n n 
C01 H1 AJP sing 96 n n 
C01 H2 AJP sing 97 n n 
C01 H3 AJP sing 98 n n 
C02 H4 AJP sing 99 n n 
C03 H5 AJP sing 100 n n 
C03 H6 AJP sing 101 n n 
C04 H7 AJP sing 102 n n 
C04 H8 AJP sing 103 n n 
C06 H9 AJP sing 104 n n 
C07 H10 AJP sing 105 n n 
C08 H11 AJP sing 106 n n 
C10 H12 AJP sing 107 n n 
C11 H13 AJP sing 108 n n 
C13 H14 AJP sing 109 n n 
C13 H15 AJP sing 110 n n 
C14 H16 AJP sing 111 n n 
C14 H17 AJP sing 112 n n 
C15 H18 AJP sing 113 n n 
C16 H19 AJP sing 114 n n 
C17 H20 AJP sing 115 n n 
C17 H21 AJP sing 116 n n 
C18 H22 AJP sing 117 n n 
C18 H23 AJP sing 118 n n 
C19 H24 AJP sing 119 n n 
C21 H25 AJP sing 120 n n 
C21 H26 AJP sing 121 n n 
C22 H27 AJP sing 122 n n 
C23 H28 AJP sing 123 n n 
C24 H29 AJP sing 124 n n 
C24 H30 AJP sing 125 n n 
C26 H31 AJP sing 126 n n 
C27 H32 AJP sing 127 n n 
C28 H33 AJP sing 128 n n 
C29 H34 AJP sing 129 n n 
C30 H35 AJP sing 130 n n 
C32 H36 AJP sing 131 n n 
C32 H37 AJP sing 132 n n 
O33 H38 AJP sing 133 n n 
C35 H39 AJP sing 134 n n 
C36 H40 AJP sing 135 n n 
C37 H41 AJP sing 136 n n 
C38 H42 AJP sing 137 n n 
C39 H43 AJP sing 138 n n 
C41 H44 AJP sing 139 n n 
C41 H45 AJP sing 140 n n 
O42 H46 AJP sing 141 n n 
O43 H47 AJP sing 142 n n 
C45 H48 AJP sing 143 n n 
C46 H49 AJP sing 144 n n 
C47 H50 AJP sing 145 n n 
C48 H51 AJP sing 146 n n 
C49 H52 AJP sing 147 n n 
C49 H53 AJP sing 148 n n 
O51 H54 AJP sing 149 n n 
O52 H55 AJP sing 150 n n 
O53 H56 AJP sing 151 n n 
C55 H57 AJP sing 152 n n 
C56 H58 AJP sing 153 n n 
C57 H59 AJP sing 154 n n 
C58 H60 AJP sing 155 n n 
C59 H61 AJP sing 156 n n 
C61 H62 AJP sing 157 n n 
C61 H63 AJP sing 158 n n 
O62 H64 AJP sing 159 n n 
O63 H65 AJP sing 160 n n 
C65 H66 AJP sing 161 n n 
C66 H67 AJP sing 162 n n 
C67 H68 AJP sing 163 n n 
C68 H69 AJP sing 164 n n 
C69 H70 AJP sing 165 n n 
C71 H71 AJP sing 166 n n 
C71 H72 AJP sing 167 n n 
O72 H73 AJP sing 168 n n 
O73 H74 AJP sing 169 n n 
O74 H75 AJP sing 170 n n 
O75 H76 AJP sing 171 n n 
O76 H77 AJP sing 172 n n 
O77 H78 AJP sing 173 n n 
O78 H79 AJP sing 174 n n 
O79 H80 AJP sing 175 n n 
C80 H81 AJP sing 176 n n 
C80 H82 AJP sing 177 n n 
C80 H83 AJP sing 178 n n 
C81 H84 AJP sing 179 n n 
C81 H85 AJP sing 180 n n 
C81 H86 AJP sing 181 n n 
O82 H87 AJP sing 182 n n 
C83 H88 AJP sing 183 n n 
C83 H89 AJP sing 184 n n 
C83 H90 AJP sing 185 n n 
C85 H91 AJP sing 186 n n 
C85 H92 AJP sing 187 n n 
#
_atom_sites.entry_id                     6JB3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BJX B 1 2001 2001 BJX RPG . 
C 3 AJP B 1 2002 2002 AJP AJP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 AJP . . . C 3 166.156 95.181 142.9 1 216.12 ? C01 AJP 2002 B 1 
HETATM 2 C C02 AJP . . . C 3 165.182 96.032 142.084 1 220.88 ? C02 AJP 2002 B 1 
HETATM 3 C C03 AJP . . . C 3 163.729 95.773 142.491 1 214.13 ? C03 AJP 2002 B 1 
HETATM 4 C C04 AJP . . . C 3 163.075 97.021 143.074 1 207.16 ? C04 AJP 2002 B 1 
HETATM 5 C C05 AJP . . . C 3 164.025 97.663 144.077 1 208.79 ? C05 AJP 2002 B 1 
HETATM 6 C C06 AJP . . . C 3 163.396 98.858 144.822 1 202.62 ? C06 AJP 2002 B 1 
HETATM 7 C C07 AJP . . . C 3 163.659 98.441 146.267 1 206.03 ? C07 AJP 2002 B 1 
HETATM 8 C C08 AJP . . . C 3 163.554 96.942 146.169 1 213.3 ? C08 AJP 2002 B 1 
HETATM 9 O O09 AJP . . . C 3 164.371 96.666 145.053 1 206.28 ? O09 AJP 2002 B 1 
HETATM 10 C C10 AJP . . . C 3 163.966 96.465 147.547 1 216.07 ? C10 AJP 2002 B 1 
HETATM 11 C C11 AJP . . . C 3 163.692 97.708 148.401 1 214.41 ? C11 AJP 2002 B 1 
HETATM 12 C C12 AJP . . . C 3 162.863 98.655 147.544 1 213.72 ? C12 AJP 2002 B 1 
HETATM 13 C C13 AJP . . . C 3 162.986 100.032 148.18 1 209.48 ? C13 AJP 2002 B 1 
HETATM 14 C C14 AJP . . . C 3 162.398 99.988 149.593 1 207.27 ? C14 AJP 2002 B 1 
HETATM 15 C C15 AJP . . . C 3 162.952 98.865 150.475 1 202.08 ? C15 AJP 2002 B 1 
HETATM 16 C C16 AJP . . . C 3 163.035 97.521 149.755 1 205.12 ? C16 AJP 2002 B 1 
HETATM 17 C C17 AJP . . . C 3 163.752 96.51 150.636 1 203.02 ? C17 AJP 2002 B 1 
HETATM 18 C C18 AJP . . . C 3 162.866 96.272 151.844 1 210.88 ? C18 AJP 2002 B 1 
HETATM 19 C C19 AJP . . . C 3 162.667 97.59 152.58 1 209.77 ? C19 AJP 2002 B 1 
HETATM 20 C C20 AJP . . . C 3 162.081 98.686 151.699 1 203.3 ? C20 AJP 2002 B 1 
HETATM 21 C C21 AJP . . . C 3 162.045 99.982 152.496 1 202.08 ? C21 AJP 2002 B 1 
HETATM 22 C C22 AJP . . . C 3 161.183 99.806 153.742 1 206.57 ? C22 AJP 2002 B 1 
HETATM 23 C C23 AJP . . . C 3 161.666 98.626 154.576 1 210.73 ? C23 AJP 2002 B 1 
HETATM 24 C C24 AJP . . . C 3 161.755 97.349 153.761 1 209.38 ? C24 AJP 2002 B 1 
HETATM 25 O O25 AJP . . . C 3 160.761 98.384 155.638 1 211.07 ? O25 AJP 2002 B 1 
HETATM 26 C C26 AJP . . . C 3 161.188 97.27 156.424 1 212.47 ? C26 AJP 2002 B 1 
HETATM 27 C C27 AJP . . . C 3 160.023 96.809 157.289 1 216.43 ? C27 AJP 2002 B 1 
HETATM 28 C C28 AJP . . . C 3 159.973 97.532 158.626 1 209.1 ? C28 AJP 2002 B 1 
HETATM 29 C C29 AJP . . . C 3 160.718 98.868 158.587 1 211.04 ? C29 AJP 2002 B 1 
HETATM 30 C C30 AJP . . . C 3 162.184 98.678 158.158 1 208.46 ? C30 AJP 2002 B 1 
HETATM 31 O O31 AJP . . . C 3 162.329 97.593 157.23 1 208.88 ? O31 AJP 2002 B 1 
HETATM 32 C C32 AJP . . . C 3 162.814 99.932 157.545 1 202.66 ? C32 AJP 2002 B 1 
HETATM 33 O O33 AJP . . . C 3 162.902 100.99 158.502 1 214.61 ? O33 AJP 2002 B 1 
HETATM 34 O O34 AJP . . . C 3 160.574 99.599 159.817 1 218.23 ? O34 AJP 2002 B 1 
HETATM 35 C C35 AJP . . . C 3 161.031 98.944 161.004 1 221.62 ? C35 AJP 2002 B 1 
HETATM 36 C C36 AJP . . . C 3 160.377 99.576 162.229 1 219.11 ? C36 AJP 2002 B 1 
HETATM 37 C C37 AJP . . . C 3 160.744 98.792 163.489 1 222.77 ? C37 AJP 2002 B 1 
HETATM 38 C C38 AJP . . . C 3 162.098 98.088 163.372 1 225.31 ? C38 AJP 2002 B 1 
HETATM 39 C C39 AJP . . . C 3 163.063 98.767 162.389 1 224.87 ? C39 AJP 2002 B 1 
HETATM 40 O O40 AJP . . . C 3 162.443 99.145 161.148 1 227.96 ? O40 AJP 2002 B 1 
HETATM 41 C C41 AJP . . . C 3 163.757 99.98 163.015 1 215.49 ? C41 AJP 2002 B 1 
HETATM 42 O O42 AJP . . . C 3 164.163 100.886 161.981 1 210.88 ? O42 AJP 2002 B 1 
HETATM 43 O O43 AJP . . . C 3 161.908 96.712 163.006 1 228.87 ? O43 AJP 2002 B 1 
HETATM 44 O O44 AJP . . . C 3 160.79 99.69 164.593 1 221.4 ? O44 AJP 2002 B 1 
HETATM 45 C C45 AJP . . . C 3 159.504 99.917 165.169 1 221.41 ? C45 AJP 2002 B 1 
HETATM 46 C C46 AJP . . . C 3 159.707 100.587 166.522 1 223.88 ? C46 AJP 2002 B 1 
HETATM 47 C C47 AJP . . . C 3 158.37 100.791 167.224 1 216.97 ? C47 AJP 2002 B 1 
HETATM 48 C C48 AJP . . . C 3 157.585 99.487 167.268 1 216.78 ? C48 AJP 2002 B 1 
HETATM 49 C C49 AJP . . . C 3 157.498 98.853 165.884 1 213.13 ? C49 AJP 2002 B 1 
HETATM 50 O O50 AJP . . . C 3 158.811 98.68 165.349 1 222.63 ? O50 AJP 2002 B 1 
HETATM 51 O O51 AJP . . . C 3 156.268 99.767 167.749 1 215.74 ? O51 AJP 2002 B 1 
HETATM 52 O O52 AJP . . . C 3 158.588 101.245 168.564 1 202.08 ? O52 AJP 2002 B 1 
HETATM 53 O O53 AJP . . . C 3 160.37 101.844 166.33 1 222.29 ? O53 AJP 2002 B 1 
HETATM 54 O O54 AJP . . . C 3 158.957 99.731 162.088 1 215.12 ? O54 AJP 2002 B 1 
HETATM 55 C C55 AJP . . . C 3 158.206 98.562 161.758 1 218.83 ? C55 AJP 2002 B 1 
HETATM 56 C C56 AJP . . . C 3 156.898 99.02 161.115 1 215.89 ? C56 AJP 2002 B 1 
HETATM 57 C C57 AJP . . . C 3 155.763 98.958 162.129 1 221.81 ? C57 AJP 2002 B 1 
HETATM 58 C C58 AJP . . . C 3 155.57 97.544 162.67 1 231.68 ? C58 AJP 2002 B 1 
HETATM 59 C C59 AJP . . . C 3 156.907 96.809 162.763 1 228.33 ? C59 AJP 2002 B 1 
HETATM 60 O O60 AJP . . . C 3 157.945 97.776 162.927 1 225.12 ? O60 AJP 2002 B 1 
HETATM 61 C C61 AJP . . . C 3 156.934 95.821 163.923 1 220.24 ? C61 AJP 2002 B 1 
HETATM 62 O O62 AJP . . . C 3 156.015 94.754 163.661 1 220.74 ? O62 AJP 2002 B 1 
HETATM 63 O O63 AJP . . . C 3 154.667 96.823 161.819 1 232.46 ? O63 AJP 2002 B 1 
HETATM 64 O O64 AJP . . . C 3 156.093 99.826 163.21 1 220.5 ? O64 AJP 2002 B 1 
HETATM 65 O O76 AJP . . . C 3 156.598 98.19 159.985 1 212.27 ? O76 AJP 2002 B 1 
HETATM 66 O O77 AJP . . . C 3 158.586 97.731 158.88 1 204.84 ? O77 AJP 2002 B 1 
HETATM 67 O O78 AJP . . . C 3 160.087 95.396 157.51 1 226.91 ? O78 AJP 2002 B 1 
HETATM 68 O O79 AJP . . . C 3 161.245 100.997 154.534 1 212.55 ? O79 AJP 2002 B 1 
HETATM 69 C C80 AJP . . . C 3 160.665 98.334 151.253 1 208.58 ? C80 AJP 2002 B 1 
HETATM 70 C C81 AJP . . . C 3 161.408 98.187 147.507 1 210.45 ? C81 AJP 2002 B 1 
HETATM 71 O O82 AJP . . . C 3 163.126 95.368 147.896 1 218.28 ? O82 AJP 2002 B 1 
HETATM 72 C C83 AJP . . . C 3 161.965 99.162 144.375 1 202.08 ? C83 AJP 2002 B 1 
HETATM 73 O O84 AJP . . . C 3 165.239 98.087 143.457 1 212.51 ? O84 AJP 2002 B 1 
HETATM 74 C C85 AJP . . . C 3 165.504 97.528 142.164 1 214.83 ? C85 AJP 2002 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           74 
#