data_6JBC
#
_model_server_result.job_id            LPpSOB7BvSOh2aKsm4ZD7Q 
_model_server_result.datetime_utc      '2024-12-26 20:01:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    6JBC 
#
_exptl.entry_id    6JBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6JBC 
_cell.length_a            94.803 
_cell.length_b            94.803 
_cell.length_c            60.04 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 21 A GLU 21 1_555 H CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc2 A OE2 GLU 21 A GLU 21 1_555 H CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc3 A O GLU 21 A GLU 21 1_555 H CA CA . A CA 807 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc4 A OE2 GLU 21 A GLU 21 1_555 H CA CA . A CA 807 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc5 A OE1 GLU 61 A GLU 61 1_555 J CA CA . A CA 809 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc6 A OE2 GLU 61 A GLU 61 1_555 J CA CA . A CA 809 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc7 A OD1 ASP 94 A ASP 94 1_555 J CA CA . A CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc8 A O PHE 101 A PHE 101 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? 
metalc ? metalc9 A OD1 ASN 103 A ASN 103 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? 
metalc ? metalc10 A O LEU 169 A LEU 169 1_555 L NA NA . A NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc11 A OD1 ASP 266 A ASP 266 1_555 I CA CA . A CA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? 
metalc ? metalc12 A OD2 ASP 266 A ASP 266 1_555 I CA CA . A CA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc13 B O3 PG4 . A PG4 801 1_555 L NA NA . A NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc14 I CA CA . A CA 808 1_555 M O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc15 J CA CA . A CA 809 1_555 M O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc16 J CA CA . A CA 809 1_555 M O HOH . A HOH 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
metalc ? metalc17 J CA CA . A CA 809 1_555 M O HOH . A HOH 931 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? 
metalc ? metalc18 K NA NA . A NA 810 1_555 M O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 125 n n 
C1 C2 GOL sing 126 n n 
C1 H11 GOL sing 127 n n 
C1 H12 GOL sing 128 n n 
O1 HO1 GOL sing 129 n n 
C2 O2 GOL sing 130 n n 
C2 C3 GOL sing 131 n n 
C2 H2 GOL sing 132 n n 
O2 HO2 GOL sing 133 n n 
C3 O3 GOL sing 134 n n 
C3 H31 GOL sing 135 n n 
C3 H32 GOL sing 136 n n 
O3 HO3 GOL sing 137 n n 
#
_atom_sites.entry_id                     6JBC 
_atom_sites.fract_transf_matrix[1][1]    0.010548 
_atom_sites.fract_transf_matrix[1][2]    0.00609 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01218 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PG4 A 1 801 801 PG4 PG4 . 
C 3 GOL A 1 802 401 GOL GOL . 
D 3 GOL A 1 803 402 GOL GOL . 
E 3 GOL A 1 804 403 GOL GOL . 
F 4 EDO A 1 805 802 EDO EDO . 
G 5 PPV A 1 806 301 PPV PPV . 
H 6 CA A 1 807 201 CA CA . 
I 6 CA A 1 808 202 CA CA . 
J 6 CA A 1 809 203 CA CA . 
K 7 NA A 1 810 251 NA NA . 
L 7 NA A 1 811 252 NA NA . 
M 8 HOH A 1 901 69 HOH HOH . 
M 8 HOH A 2 902 38 HOH HOH . 
M 8 HOH A 3 903 25 HOH HOH . 
M 8 HOH A 4 904 12 HOH HOH . 
M 8 HOH A 5 905 26 HOH HOH . 
M 8 HOH A 6 906 8 HOH HOH . 
M 8 HOH A 7 907 16 HOH HOH . 
M 8 HOH A 8 908 32 HOH HOH . 
M 8 HOH A 9 909 41 HOH HOH . 
M 8 HOH A 10 910 47 HOH HOH . 
M 8 HOH A 11 911 27 HOH HOH . 
M 8 HOH A 12 912 72 HOH HOH . 
M 8 HOH A 13 913 78 HOH HOH . 
M 8 HOH A 14 914 70 HOH HOH . 
M 8 HOH A 15 915 19 HOH HOH . 
M 8 HOH A 16 916 85 HOH HOH . 
M 8 HOH A 17 917 14 HOH HOH . 
M 8 HOH A 18 918 30 HOH HOH . 
M 8 HOH A 19 919 76 HOH HOH . 
M 8 HOH A 20 920 91 HOH HOH . 
M 8 HOH A 21 921 75 HOH HOH . 
M 8 HOH A 22 922 63 HOH HOH . 
M 8 HOH A 23 923 6 HOH HOH . 
M 8 HOH A 24 924 77 HOH HOH . 
M 8 HOH A 25 925 88 HOH HOH . 
M 8 HOH A 26 926 42 HOH HOH . 
M 8 HOH A 27 927 29 HOH HOH . 
M 8 HOH A 28 928 68 HOH HOH . 
M 8 HOH A 29 929 15 HOH HOH . 
M 8 HOH A 30 930 99 HOH HOH . 
M 8 HOH A 31 931 90 HOH HOH . 
M 8 HOH A 32 932 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -23.929 -14.344 12.043 1 91.42 ? C1 GOL 803 A 1 
HETATM 2 O O1 GOL . . . D 3 -23.429 -15.345 11.138 1 91.65 ? O1 GOL 803 A 1 
HETATM 3 C C2 GOL . . . D 3 -24.182 -13.036 11.279 1 91.28 ? C2 GOL 803 A 1 
HETATM 4 O O2 GOL . . . D 3 -25.144 -13.269 10.238 1 90.87 ? O2 GOL 803 A 1 
HETATM 5 C C3 GOL . . . D 3 -24.708 -11.968 12.244 1 91.48 ? C3 GOL 803 A 1 
HETATM 6 O O3 GOL . . . D 3 -24.945 -10.737 11.538 1 91.16 ? O3 GOL 803 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#