data_6JBC # _model_server_result.job_id zt70W4CDL3HLsC6ZewONRA _model_server_result.datetime_utc '2024-12-26 20:21:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":806}' # _entry.id 6JBC # _exptl.entry_id 6JBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.975 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYROPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JBC _cell.length_a 94.803 _cell.length_b 94.803 _cell.length_c 60.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 21 A GLU 21 1_555 H CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 A OE2 GLU 21 A GLU 21 1_555 H CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 A O GLU 21 A GLU 21 1_555 H CA CA . A CA 807 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc4 A OE2 GLU 21 A GLU 21 1_555 H CA CA . A CA 807 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc5 A OE1 GLU 61 A GLU 61 1_555 J CA CA . A CA 809 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc6 A OE2 GLU 61 A GLU 61 1_555 J CA CA . A CA 809 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc7 A OD1 ASP 94 A ASP 94 1_555 J CA CA . A CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc8 A O PHE 101 A PHE 101 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc9 A OD1 ASN 103 A ASN 103 1_555 K NA NA . A NA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc10 A O LEU 169 A LEU 169 1_555 L NA NA . A NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc11 A OD1 ASP 266 A ASP 266 1_555 I CA CA . A CA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc12 A OD2 ASP 266 A ASP 266 1_555 I CA CA . A CA 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc13 B O3 PG4 . A PG4 801 1_555 L NA NA . A NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc14 I CA CA . A CA 808 1_555 M O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc15 J CA CA . A CA 809 1_555 M O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc16 J CA CA . A CA 809 1_555 M O HOH . A HOH 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc17 J CA CA . A CA 809 1_555 M O HOH . A HOH 931 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc18 K NA NA . A NA 810 1_555 M O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? # _chem_comp.formula 'H4 O7 P2' _chem_comp.formula_weight 177.975 _chem_comp.id PPV _chem_comp.mon_nstd_flag . _chem_comp.name PYROPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 P1 PPV sing 299 n n O11 H11 PPV sing 300 n n P1 O21 PPV sing 301 n n P1 O31 PPV doub 302 n n P1 OPP PPV sing 303 n n O21 H21 PPV sing 304 n n OPP P2 PPV sing 305 n n P2 O12 PPV sing 306 n n P2 O22 PPV doub 307 n n P2 O32 PPV sing 308 n n O12 H12 PPV sing 309 n n O32 H32 PPV sing 310 n n # _atom_sites.entry_id 6JBC _atom_sites.fract_transf_matrix[1][1] 0.010548 _atom_sites.fract_transf_matrix[1][2] 0.00609 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG4 A 1 801 801 PG4 PG4 . C 3 GOL A 1 802 401 GOL GOL . D 3 GOL A 1 803 402 GOL GOL . E 3 GOL A 1 804 403 GOL GOL . F 4 EDO A 1 805 802 EDO EDO . G 5 PPV A 1 806 301 PPV PPV . H 6 CA A 1 807 201 CA CA . I 6 CA A 1 808 202 CA CA . J 6 CA A 1 809 203 CA CA . K 7 NA A 1 810 251 NA NA . L 7 NA A 1 811 252 NA NA . M 8 HOH A 1 901 69 HOH HOH . M 8 HOH A 2 902 38 HOH HOH . M 8 HOH A 3 903 25 HOH HOH . M 8 HOH A 4 904 12 HOH HOH . M 8 HOH A 5 905 26 HOH HOH . M 8 HOH A 6 906 8 HOH HOH . M 8 HOH A 7 907 16 HOH HOH . M 8 HOH A 8 908 32 HOH HOH . M 8 HOH A 9 909 41 HOH HOH . M 8 HOH A 10 910 47 HOH HOH . M 8 HOH A 11 911 27 HOH HOH . M 8 HOH A 12 912 72 HOH HOH . M 8 HOH A 13 913 78 HOH HOH . M 8 HOH A 14 914 70 HOH HOH . M 8 HOH A 15 915 19 HOH HOH . M 8 HOH A 16 916 85 HOH HOH . M 8 HOH A 17 917 14 HOH HOH . M 8 HOH A 18 918 30 HOH HOH . M 8 HOH A 19 919 76 HOH HOH . M 8 HOH A 20 920 91 HOH HOH . M 8 HOH A 21 921 75 HOH HOH . M 8 HOH A 22 922 63 HOH HOH . M 8 HOH A 23 923 6 HOH HOH . M 8 HOH A 24 924 77 HOH HOH . M 8 HOH A 25 925 88 HOH HOH . M 8 HOH A 26 926 42 HOH HOH . M 8 HOH A 27 927 29 HOH HOH . M 8 HOH A 28 928 68 HOH HOH . M 8 HOH A 29 929 15 HOH HOH . M 8 HOH A 30 930 99 HOH HOH . M 8 HOH A 31 931 90 HOH HOH . M 8 HOH A 32 932 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 PPV . . . G 5 -30.036 -14.879 9.603 1 65.06 ? O11 PPV 806 A 1 HETATM 2 P P1 PPV . . . G 5 -30.871 -14.619 8.246 1 63.91 ? P1 PPV 806 A 1 HETATM 3 O O21 PPV . . . G 5 -31.498 -13.221 8.361 1 64.31 ? O21 PPV 806 A 1 HETATM 4 O O31 PPV . . . G 5 -29.849 -14.595 7.011 1 66.37 ? O31 PPV 806 A 1 HETATM 5 O OPP PPV . . . G 5 -31.961 -15.754 8.013 1 65.21 ? OPP PPV 806 A 1 HETATM 6 P P2 PPV . . . G 5 -33.21 -16.347 8.828 1 63.68 ? P2 PPV 806 A 1 HETATM 7 O O12 PPV . . . G 5 -34.279 -15.294 8.972 1 64.29 ? O12 PPV 806 A 1 HETATM 8 O O22 PPV . . . G 5 -33.886 -17.544 8.063 1 65.99 ? O22 PPV 806 A 1 HETATM 9 O O32 PPV . . . G 5 -32.734 -16.844 10.297 1 64.62 ? O32 PPV 806 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #