data_6JCJ # _model_server_result.job_id fL1xmRN-e5SoC7xCuXrm-Q _model_server_result.datetime_utc '2024-11-27 08:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":502}' # _entry.id 6JCJ # _exptl.entry_id 6JCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JCJ _cell.length_a 105.544 _cell.length_b 157.329 _cell.length_c 184.031 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 K N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc10 H MG MG . A MG 502 1_555 S O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc11 H MG MG . A MG 502 1_555 S O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc12 H MG MG . A MG 502 1_555 S O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc13 H MG MG . A MG 502 1_555 S O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc15 B OD2 ASP 177 B ASP 177 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc16 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc17 C OD1 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc18 C OD2 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc19 C O THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc20 C OG1 THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc21 C O GLY 44 C GLY 44 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc22 C OE1 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc23 C OE2 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc24 M O1G GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc25 M O1B GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc26 N MG MG . C MG 502 1_555 U O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc27 N MG MG . C MG 502 1_555 U O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc28 N MG MG . C MG 502 1_555 U O HOH . C HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc29 N MG MG . C MG 502 1_555 U O HOH . C HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JCJ _atom_sites.fract_transf_matrix[1][1] 0.009475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 9 BG0 B 1 503 1 BG0 CRO . M 5 GTP C 1 501 501 GTP GTP . N 6 MG C 1 502 502 MG MG . O 7 CA C 1 503 1 CA CA . P 5 GTP D 1 501 501 GTP GTP . Q 9 BG0 D 1 502 2 BG0 CRO . R 10 ACP F 1 401 401 ACP ACP . S 11 HOH A 1 601 24 HOH HOH . S 11 HOH A 2 602 70 HOH HOH . S 11 HOH A 3 603 74 HOH HOH . S 11 HOH A 4 604 39 HOH HOH . S 11 HOH A 5 605 32 HOH HOH . S 11 HOH A 6 606 52 HOH HOH . S 11 HOH A 7 607 73 HOH HOH . S 11 HOH A 8 608 46 HOH HOH . S 11 HOH A 9 609 33 HOH HOH . S 11 HOH A 10 610 72 HOH HOH . S 11 HOH A 11 611 71 HOH HOH . S 11 HOH A 12 612 23 HOH HOH . S 11 HOH A 13 613 29 HOH HOH . S 11 HOH A 14 614 57 HOH HOH . S 11 HOH A 15 615 45 HOH HOH . S 11 HOH A 16 616 63 HOH HOH . T 11 HOH B 1 601 85 HOH HOH . T 11 HOH B 2 602 58 HOH HOH . T 11 HOH B 3 603 67 HOH HOH . T 11 HOH B 4 604 41 HOH HOH . T 11 HOH B 5 605 55 HOH HOH . T 11 HOH B 6 606 26 HOH HOH . T 11 HOH B 7 607 60 HOH HOH . T 11 HOH B 8 608 16 HOH HOH . T 11 HOH B 9 609 1 HOH HOH . T 11 HOH B 10 610 36 HOH HOH . T 11 HOH B 11 611 2 HOH HOH . T 11 HOH B 12 612 25 HOH HOH . T 11 HOH B 13 613 86 HOH HOH . T 11 HOH B 14 614 80 HOH HOH . T 11 HOH B 15 615 10 HOH HOH . T 11 HOH B 16 616 78 HOH HOH . U 11 HOH C 1 601 37 HOH HOH . U 11 HOH C 2 602 15 HOH HOH . U 11 HOH C 3 603 48 HOH HOH . U 11 HOH C 4 604 40 HOH HOH . U 11 HOH C 5 605 22 HOH HOH . U 11 HOH C 6 606 44 HOH HOH . U 11 HOH C 7 607 49 HOH HOH . U 11 HOH C 8 608 35 HOH HOH . U 11 HOH C 9 609 30 HOH HOH . U 11 HOH C 10 610 50 HOH HOH . U 11 HOH C 11 611 9 HOH HOH . U 11 HOH C 12 612 59 HOH HOH . U 11 HOH C 13 613 4 HOH HOH . U 11 HOH C 14 614 11 HOH HOH . U 11 HOH C 15 615 6 HOH HOH . U 11 HOH C 16 616 77 HOH HOH . U 11 HOH C 17 617 76 HOH HOH . U 11 HOH C 18 618 34 HOH HOH . U 11 HOH C 19 619 17 HOH HOH . U 11 HOH C 20 620 12 HOH HOH . U 11 HOH C 21 621 47 HOH HOH . U 11 HOH C 22 622 84 HOH HOH . U 11 HOH C 23 623 28 HOH HOH . U 11 HOH C 24 624 5 HOH HOH . U 11 HOH C 25 625 75 HOH HOH . U 11 HOH C 26 626 8 HOH HOH . U 11 HOH C 27 627 38 HOH HOH . U 11 HOH C 28 628 20 HOH HOH . U 11 HOH C 29 629 65 HOH HOH . U 11 HOH C 30 630 21 HOH HOH . U 11 HOH C 31 631 19 HOH HOH . U 11 HOH C 32 632 31 HOH HOH . U 11 HOH C 33 633 54 HOH HOH . U 11 HOH C 34 634 56 HOH HOH . U 11 HOH C 35 635 14 HOH HOH . U 11 HOH C 36 636 43 HOH HOH . U 11 HOH C 37 637 42 HOH HOH . U 11 HOH C 38 638 66 HOH HOH . U 11 HOH C 39 639 53 HOH HOH . U 11 HOH C 40 640 27 HOH HOH . U 11 HOH C 41 641 51 HOH HOH . U 11 HOH C 42 642 13 HOH HOH . U 11 HOH C 43 643 7 HOH HOH . U 11 HOH C 44 644 18 HOH HOH . U 11 HOH C 45 645 69 HOH HOH . U 11 HOH C 46 646 68 HOH HOH . V 11 HOH D 1 601 81 HOH HOH . V 11 HOH D 2 602 62 HOH HOH . V 11 HOH D 3 603 79 HOH HOH . V 11 HOH D 4 604 82 HOH HOH . W 11 HOH E 1 201 61 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 6 _atom_site.Cartn_x -18.014 _atom_site.Cartn_y -19.94 _atom_site.Cartn_z -18.44 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #