data_6JCJ # _model_server_result.job_id RXxIy7Lnkf5YOiDYucXMTQ _model_server_result.datetime_utc '2024-11-27 08:02:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":502}' # _entry.id 6JCJ # _exptl.entry_id 6JCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.257 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2,7,8-triamino-4-(3-bromo-4,5-dimethoxyphenyl)-4H-1-benzopyran-3-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JCJ _cell.length_a 105.544 _cell.length_b 157.329 _cell.length_c 184.031 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc10 H MG MG . A MG 502 1_555 S O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc11 H MG MG . A MG 502 1_555 S O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc12 H MG MG . A MG 502 1_555 S O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc13 H MG MG . A MG 502 1_555 S O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc15 B OD2 ASP 177 B ASP 177 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc16 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc17 C OD1 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc18 C OD2 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc19 C O THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc20 C OG1 THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc21 C O GLY 44 C GLY 44 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc22 C OE1 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc23 C OE2 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc24 M O1G GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc25 M O1B GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc26 N MG MG . C MG 502 1_555 U O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc27 N MG MG . C MG 502 1_555 U O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc28 N MG MG . C MG 502 1_555 U O HOH . C HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc29 N MG MG . C MG 502 1_555 U O HOH . C HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C18 H17 Br N4 O3' _chem_comp.formula_weight 417.257 _chem_comp.id BG0 _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2,7,8-triamino-4-(3-bromo-4,5-dimethoxyphenyl)-4H-1-benzopyran-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR C22 BG0 sing 121 n n C26 O25 BG0 sing 122 n n O25 C24 BG0 sing 123 n n C22 C24 BG0 sing 124 n y C22 C21 BG0 doub 125 n y C24 C03 BG0 doub 126 n y C21 C05 BG0 sing 127 n y C03 O02 BG0 sing 128 n n C03 C04 BG0 sing 129 n y O02 C01 BG0 sing 130 n n N09 C08 BG0 trip 131 n n C05 C04 BG0 doub 132 n y C05 C06 BG0 sing 133 n n C08 C07 BG0 sing 134 n n C06 C07 BG0 sing 135 n n C06 C20 BG0 sing 136 n n C07 C10 BG0 doub 137 n n C19 C20 BG0 doub 138 n y C19 C18 BG0 sing 139 n y C20 C13 BG0 sing 140 n y C10 N11 BG0 sing 141 n n C10 O12 BG0 sing 142 n n C18 C16 BG0 doub 143 n y C13 O12 BG0 sing 144 n n C13 C14 BG0 doub 145 n y C16 C14 BG0 sing 146 n y C16 N17 BG0 sing 147 n n C14 N15 BG0 sing 148 n n C01 H1 BG0 sing 149 n n C01 H2 BG0 sing 150 n n C01 H3 BG0 sing 151 n n C06 H5 BG0 sing 152 n n N11 H8 BG0 sing 153 n n N11 H9 BG0 sing 154 n n N15 H11 BG0 sing 155 n n N15 H12 BG0 sing 156 n n N17 H13 BG0 sing 157 n n N17 H14 BG0 sing 158 n n C18 H15 BG0 sing 159 n n C19 H16 BG0 sing 160 n n C21 H17 BG0 sing 161 n n C26 H18 BG0 sing 162 n n C26 H19 BG0 sing 163 n n C26 H20 BG0 sing 164 n n C04 H7 BG0 sing 165 n n # _atom_sites.entry_id 6JCJ _atom_sites.fract_transf_matrix[1][1] 0.009475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 9 BG0 B 1 503 1 BG0 CRO . M 5 GTP C 1 501 501 GTP GTP . N 6 MG C 1 502 502 MG MG . O 7 CA C 1 503 1 CA CA . P 5 GTP D 1 501 501 GTP GTP . Q 9 BG0 D 1 502 2 BG0 CRO . R 10 ACP F 1 401 401 ACP ACP . S 11 HOH A 1 601 24 HOH HOH . S 11 HOH A 2 602 70 HOH HOH . S 11 HOH A 3 603 74 HOH HOH . S 11 HOH A 4 604 39 HOH HOH . S 11 HOH A 5 605 32 HOH HOH . S 11 HOH A 6 606 52 HOH HOH . S 11 HOH A 7 607 73 HOH HOH . S 11 HOH A 8 608 46 HOH HOH . S 11 HOH A 9 609 33 HOH HOH . S 11 HOH A 10 610 72 HOH HOH . S 11 HOH A 11 611 71 HOH HOH . S 11 HOH A 12 612 23 HOH HOH . S 11 HOH A 13 613 29 HOH HOH . S 11 HOH A 14 614 57 HOH HOH . S 11 HOH A 15 615 45 HOH HOH . S 11 HOH A 16 616 63 HOH HOH . T 11 HOH B 1 601 85 HOH HOH . T 11 HOH B 2 602 58 HOH HOH . T 11 HOH B 3 603 67 HOH HOH . T 11 HOH B 4 604 41 HOH HOH . T 11 HOH B 5 605 55 HOH HOH . T 11 HOH B 6 606 26 HOH HOH . T 11 HOH B 7 607 60 HOH HOH . T 11 HOH B 8 608 16 HOH HOH . T 11 HOH B 9 609 1 HOH HOH . T 11 HOH B 10 610 36 HOH HOH . T 11 HOH B 11 611 2 HOH HOH . T 11 HOH B 12 612 25 HOH HOH . T 11 HOH B 13 613 86 HOH HOH . T 11 HOH B 14 614 80 HOH HOH . T 11 HOH B 15 615 10 HOH HOH . T 11 HOH B 16 616 78 HOH HOH . U 11 HOH C 1 601 37 HOH HOH . U 11 HOH C 2 602 15 HOH HOH . U 11 HOH C 3 603 48 HOH HOH . U 11 HOH C 4 604 40 HOH HOH . U 11 HOH C 5 605 22 HOH HOH . U 11 HOH C 6 606 44 HOH HOH . U 11 HOH C 7 607 49 HOH HOH . U 11 HOH C 8 608 35 HOH HOH . U 11 HOH C 9 609 30 HOH HOH . U 11 HOH C 10 610 50 HOH HOH . U 11 HOH C 11 611 9 HOH HOH . U 11 HOH C 12 612 59 HOH HOH . U 11 HOH C 13 613 4 HOH HOH . U 11 HOH C 14 614 11 HOH HOH . U 11 HOH C 15 615 6 HOH HOH . U 11 HOH C 16 616 77 HOH HOH . U 11 HOH C 17 617 76 HOH HOH . U 11 HOH C 18 618 34 HOH HOH . U 11 HOH C 19 619 17 HOH HOH . U 11 HOH C 20 620 12 HOH HOH . U 11 HOH C 21 621 47 HOH HOH . U 11 HOH C 22 622 84 HOH HOH . U 11 HOH C 23 623 28 HOH HOH . U 11 HOH C 24 624 5 HOH HOH . U 11 HOH C 25 625 75 HOH HOH . U 11 HOH C 26 626 8 HOH HOH . U 11 HOH C 27 627 38 HOH HOH . U 11 HOH C 28 628 20 HOH HOH . U 11 HOH C 29 629 65 HOH HOH . U 11 HOH C 30 630 21 HOH HOH . U 11 HOH C 31 631 19 HOH HOH . U 11 HOH C 32 632 31 HOH HOH . U 11 HOH C 33 633 54 HOH HOH . U 11 HOH C 34 634 56 HOH HOH . U 11 HOH C 35 635 14 HOH HOH . U 11 HOH C 36 636 43 HOH HOH . U 11 HOH C 37 637 42 HOH HOH . U 11 HOH C 38 638 66 HOH HOH . U 11 HOH C 39 639 53 HOH HOH . U 11 HOH C 40 640 27 HOH HOH . U 11 HOH C 41 641 51 HOH HOH . U 11 HOH C 42 642 13 HOH HOH . U 11 HOH C 43 643 7 HOH HOH . U 11 HOH C 44 644 18 HOH HOH . U 11 HOH C 45 645 69 HOH HOH . U 11 HOH C 46 646 68 HOH HOH . V 11 HOH D 1 601 81 HOH HOH . V 11 HOH D 2 602 62 HOH HOH . V 11 HOH D 3 603 79 HOH HOH . V 11 HOH D 4 604 82 HOH HOH . W 11 HOH E 1 201 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BG0 . . . Q 9 -9.675 -6.95 -21.511 1 32.17 ? C01 BG0 502 D 1 HETATM 2 O O02 BG0 . . . Q 9 -10.602 -6.435 -22.442 1 36.25 ? O02 BG0 502 D 1 HETATM 3 C C03 BG0 . . . Q 9 -11.984 -6.773 -22.396 1 39.45 ? C03 BG0 502 D 1 HETATM 4 C C04 BG0 . . . Q 9 -12.673 -7.08 -21.218 1 38.41 ? C04 BG0 502 D 1 HETATM 5 C C05 BG0 . . . Q 9 -14.035 -7.387 -21.262 1 37.18 ? C05 BG0 502 D 1 HETATM 6 C C06 BG0 . . . Q 9 -14.861 -7.759 -20.01 1 32.94 ? C06 BG0 502 D 1 HETATM 7 C C07 BG0 . . . Q 9 -14.766 -9.243 -19.868 1 30.85 ? C07 BG0 502 D 1 HETATM 8 C C08 BG0 . . . Q 9 -15.227 -10.207 -20.944 1 30.15 ? C08 BG0 502 D 1 HETATM 9 N N09 BG0 . . . Q 9 -15.497 -10.978 -21.714 1 30.73 ? N09 BG0 502 D 1 HETATM 10 C C10 BG0 . . . Q 9 -14.211 -9.856 -18.638 1 30.24 ? C10 BG0 502 D 1 HETATM 11 N N11 BG0 . . . Q 9 -14.49 -11.259 -18.424 1 30.24 ? N11 BG0 502 D 1 HETATM 12 O O12 BG0 . . . Q 9 -14.29 -9.111 -17.473 1 29.63 ? O12 BG0 502 D 1 HETATM 13 C C13 BG0 . . . Q 9 -14.083 -7.713 -17.596 1 28.43 ? C13 BG0 502 D 1 HETATM 14 C C14 BG0 . . . Q 9 -13.619 -7.121 -16.438 1 26.97 ? C14 BG0 502 D 1 HETATM 15 N N15 BG0 . . . Q 9 -13.41 -7.995 -15.306 1 27.18 ? N15 BG0 502 D 1 HETATM 16 C C16 BG0 . . . Q 9 -13.391 -5.751 -16.437 1 27.08 ? C16 BG0 502 D 1 HETATM 17 N N17 BG0 . . . Q 9 -12.902 -5.084 -15.25 1 28.1 ? N17 BG0 502 D 1 HETATM 18 C C18 BG0 . . . Q 9 -13.638 -4.997 -17.614 1 27.2 ? C18 BG0 502 D 1 HETATM 19 C C19 BG0 . . . Q 9 -14.114 -5.606 -18.782 1 27.21 ? C19 BG0 502 D 1 HETATM 20 C C20 BG0 . . . Q 9 -14.344 -6.994 -18.766 1 30.14 ? C20 BG0 502 D 1 HETATM 21 C C21 BG0 . . . Q 9 -14.717 -7.406 -22.455 1 41.8 ? C21 BG0 502 D 1 HETATM 22 C C22 BG0 . . . Q 9 -14.06 -7.105 -23.633 1 47.22 ? C22 BG0 502 D 1 HETATM 23 BR BR BG0 . . . Q 9 -15.076 -7.138 -25.315 1 64.09 ? BR BG0 502 D 1 HETATM 24 C C24 BG0 . . . Q 9 -12.701 -6.798 -23.589 1 43.77 ? C24 BG0 502 D 1 HETATM 25 O O25 BG0 . . . Q 9 -12.054 -6.497 -24.776 1 46.5 ? O25 BG0 502 D 1 HETATM 26 C C26 BG0 . . . Q 9 -12.387 -5.209 -25.222 1 48.77 ? C26 BG0 502 D 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 434 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #