data_6JD0
#
_model_server_result.job_id            rQUwLuoMEBkKyxnlAUpWZw 
_model_server_result.datetime_utc      '2024-11-23 02:48:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jd0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":424}' 
#
_entry.id    6JD0 
#
_exptl.entry_id    6JD0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JD0 
_cell.length_a            63.835 
_cell.length_b            64.172 
_cell.length_c            92.857 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JD0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 X N N 
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
? 5 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 162 A CYS 118 1_555 A SG CYS 205 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf2 A SG CYS 196 A CYS 152 1_555 A SG CYS 238 A CYS 194 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 296 A CYS 252 1_555 A SG CYS 349 A CYS 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc1 A O GLU 87 A GLU 43 1_555 V NA NA . A NA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
metalc ? metalc2 A OG1 THR 101 A THR 57 1_555 W NA NA . A NA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? 
metalc ? metalc3 A OG1 THR 111 A THR 67 1_555 S NA NA . A NA 418 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc4 A O GLY 151 A GLY 107 1_555 S NA NA . A NA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc5 A O VAL 156 A VAL 112 1_555 T NA NA . A NA 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
metalc ? metalc6 A OE2 GLU 288 A GLU 244 1_555 U NA NA . A NA 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? 
metalc ? metalc7 A OE2 GLU 288 A GLU 244 1_555 W NA NA . A NA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc8 T NA NA . A NA 419 1_555 CA O1 PO4 . A PO4 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc9 T NA NA . A NA 419 1_555 JA O POL . A POL 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc10 U NA NA . A NA 420 1_555 Y O2 PO4 . A PO4 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? 
metalc ? metalc11 V NA NA . A NA 421 1_555 X O3 PO4 . A PO4 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 313 n n 
P O2 PO4 sing 314 n n 
P O3 PO4 sing 315 n n 
P O4 PO4 sing 316 n n 
#
_atom_sites.entry_id                     6JD0 
_atom_sites.fract_transf_matrix[1][1]    0.015665 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010769 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 1 GOL GOL . 
C 2 GOL A 1 402 2 GOL GOL . 
D 2 GOL A 1 403 3 GOL GOL . 
E 2 GOL A 1 404 4 GOL GOL . 
F 2 GOL A 1 405 6 GOL GOL . 
G 2 GOL A 1 406 7 GOL GOL . 
H 2 GOL A 1 407 8 GOL GOL . 
I 2 GOL A 1 408 9 GOL GOL . 
J 2 GOL A 1 409 10 GOL GOL . 
K 2 GOL A 1 410 11 GOL GOL . 
L 2 GOL A 1 411 12 GOL GOL . 
M 2 GOL A 1 412 13 GOL GOL . 
N 2 GOL A 1 413 14 GOL GOL . 
O 2 GOL A 1 414 15 GOL GOL . 
P 3 CL A 1 415 1 CL CL . 
Q 3 CL A 1 416 2 CL CL . 
R 3 CL A 1 417 4 CL CL . 
S 4 NA A 1 418 1 NA NA . 
T 4 NA A 1 419 2 NA NA . 
U 4 NA A 1 420 3 NA NA . 
V 4 NA A 1 421 4 NA NA . 
W 4 NA A 1 422 7 NA NA . 
X 5 PO4 A 1 423 1 PO4 PO4 . 
Y 5 PO4 A 1 424 2 PO4 PO4 . 
Z 5 PO4 A 1 425 3 PO4 PO4 . 
AA 5 PO4 A 1 426 4 PO4 PO4 . 
BA 5 PO4 A 1 427 6 PO4 PO4 . 
CA 5 PO4 A 1 428 11 PO4 PO4 . 
DA 5 PO4 A 1 429 12 PO4 PO4 . 
EA 5 PO4 A 1 430 13 PO4 PO4 . 
FA 6 POL A 1 431 1 POL POL . 
GA 6 POL A 1 432 2 POL POL . 
HA 6 POL A 1 433 4 POL POL . 
IA 6 POL A 1 434 5 POL POL . 
JA 6 POL A 1 435 6 POL POL . 
KA 6 POL A 1 436 7 POL POL . 
LA 6 POL A 1 437 8 POL POL . 
MA 6 POL A 1 438 9 POL POL . 
NA 6 POL A 1 439 10 POL POL . 
OA 6 POL A 1 440 11 POL POL . 
PA 7 PGE A 1 441 1 PGE PGE . 
QA 7 PGE A 1 442 2 PGE PGE . 
RA 7 PGE A 1 443 3 PGE PGE . 
SA 7 PGE A 1 444 4 PGE PGE . 
TA 7 PGE A 1 445 5 PGE PGE . 
UA 7 PGE A 1 446 6 PGE PGE . 
VA 8 EOH A 1 447 4 EOH EOH . 
WA 8 EOH A 1 448 5 EOH EOH . 
XA 8 EOH A 1 449 6 EOH EOH . 
YA 9 EDO A 1 450 1 EDO EDO . 
ZA 9 EDO A 1 451 4 EDO EDO . 
AB 10 HOH A 1 501 102 HOH HOH . 
AB 10 HOH A 2 502 99 HOH HOH . 
AB 10 HOH A 3 503 146 HOH HOH . 
AB 10 HOH A 4 504 117 HOH HOH . 
AB 10 HOH A 5 505 153 HOH HOH . 
AB 10 HOH A 6 506 148 HOH HOH . 
AB 10 HOH A 7 507 129 HOH HOH . 
AB 10 HOH A 8 508 127 HOH HOH . 
AB 10 HOH A 9 509 138 HOH HOH . 
AB 10 HOH A 10 510 45 HOH HOH . 
AB 10 HOH A 11 511 56 HOH HOH . 
AB 10 HOH A 12 512 116 HOH HOH . 
AB 10 HOH A 13 513 90 HOH HOH . 
AB 10 HOH A 14 514 61 HOH HOH . 
AB 10 HOH A 15 515 58 HOH HOH . 
AB 10 HOH A 16 516 75 HOH HOH . 
AB 10 HOH A 17 517 130 HOH HOH . 
AB 10 HOH A 18 518 16 HOH HOH . 
AB 10 HOH A 19 519 106 HOH HOH . 
AB 10 HOH A 20 520 64 HOH HOH . 
AB 10 HOH A 21 521 47 HOH HOH . 
AB 10 HOH A 22 522 26 HOH HOH . 
AB 10 HOH A 23 523 113 HOH HOH . 
AB 10 HOH A 24 524 133 HOH HOH . 
AB 10 HOH A 25 525 136 HOH HOH . 
AB 10 HOH A 26 526 82 HOH HOH . 
AB 10 HOH A 27 527 86 HOH HOH . 
AB 10 HOH A 28 528 137 HOH HOH . 
AB 10 HOH A 29 529 48 HOH HOH . 
AB 10 HOH A 30 530 119 HOH HOH . 
AB 10 HOH A 31 531 149 HOH HOH . 
AB 10 HOH A 32 532 120 HOH HOH . 
AB 10 HOH A 33 533 39 HOH HOH . 
AB 10 HOH A 34 534 60 HOH HOH . 
AB 10 HOH A 35 535 72 HOH HOH . 
AB 10 HOH A 36 536 36 HOH HOH . 
AB 10 HOH A 37 537 95 HOH HOH . 
AB 10 HOH A 38 538 109 HOH HOH . 
AB 10 HOH A 39 539 32 HOH HOH . 
AB 10 HOH A 40 540 42 HOH HOH . 
AB 10 HOH A 41 541 118 HOH HOH . 
AB 10 HOH A 42 542 103 HOH HOH . 
AB 10 HOH A 43 543 5 HOH HOH . 
AB 10 HOH A 44 544 93 HOH HOH . 
AB 10 HOH A 45 545 78 HOH HOH . 
AB 10 HOH A 46 546 44 HOH HOH . 
AB 10 HOH A 47 547 124 HOH HOH . 
AB 10 HOH A 48 548 41 HOH HOH . 
AB 10 HOH A 49 549 18 HOH HOH . 
AB 10 HOH A 50 550 37 HOH HOH . 
AB 10 HOH A 51 551 135 HOH HOH . 
AB 10 HOH A 52 552 73 HOH HOH . 
AB 10 HOH A 53 553 25 HOH HOH . 
AB 10 HOH A 54 554 131 HOH HOH . 
AB 10 HOH A 55 555 91 HOH HOH . 
AB 10 HOH A 56 556 34 HOH HOH . 
AB 10 HOH A 57 557 4 HOH HOH . 
AB 10 HOH A 58 558 66 HOH HOH . 
AB 10 HOH A 59 559 83 HOH HOH . 
AB 10 HOH A 60 560 52 HOH HOH . 
AB 10 HOH A 61 561 12 HOH HOH . 
AB 10 HOH A 62 562 20 HOH HOH . 
AB 10 HOH A 63 563 21 HOH HOH . 
AB 10 HOH A 64 564 76 HOH HOH . 
AB 10 HOH A 65 565 51 HOH HOH . 
AB 10 HOH A 66 566 6 HOH HOH . 
AB 10 HOH A 67 567 43 HOH HOH . 
AB 10 HOH A 68 568 62 HOH HOH . 
AB 10 HOH A 69 569 145 HOH HOH . 
AB 10 HOH A 70 570 35 HOH HOH . 
AB 10 HOH A 71 571 29 HOH HOH . 
AB 10 HOH A 72 572 156 HOH HOH . 
AB 10 HOH A 73 573 23 HOH HOH . 
AB 10 HOH A 74 574 46 HOH HOH . 
AB 10 HOH A 75 575 3 HOH HOH . 
AB 10 HOH A 76 576 28 HOH HOH . 
AB 10 HOH A 77 577 143 HOH HOH . 
AB 10 HOH A 78 578 134 HOH HOH . 
AB 10 HOH A 79 579 114 HOH HOH . 
AB 10 HOH A 80 580 100 HOH HOH . 
AB 10 HOH A 81 581 128 HOH HOH . 
AB 10 HOH A 82 582 33 HOH HOH . 
AB 10 HOH A 83 583 2 HOH HOH . 
AB 10 HOH A 84 584 10 HOH HOH . 
AB 10 HOH A 85 585 53 HOH HOH . 
AB 10 HOH A 86 586 24 HOH HOH . 
AB 10 HOH A 87 587 108 HOH HOH . 
AB 10 HOH A 88 588 74 HOH HOH . 
AB 10 HOH A 89 589 1 HOH HOH . 
AB 10 HOH A 90 590 65 HOH HOH . 
AB 10 HOH A 91 591 49 HOH HOH . 
AB 10 HOH A 92 592 40 HOH HOH . 
AB 10 HOH A 93 593 9 HOH HOH . 
AB 10 HOH A 94 594 15 HOH HOH . 
AB 10 HOH A 95 595 84 HOH HOH . 
AB 10 HOH A 96 596 70 HOH HOH . 
AB 10 HOH A 97 597 19 HOH HOH . 
AB 10 HOH A 98 598 71 HOH HOH . 
AB 10 HOH A 99 599 13 HOH HOH . 
AB 10 HOH A 100 600 140 HOH HOH . 
AB 10 HOH A 101 601 17 HOH HOH . 
AB 10 HOH A 102 602 31 HOH HOH . 
AB 10 HOH A 103 603 104 HOH HOH . 
AB 10 HOH A 104 604 57 HOH HOH . 
AB 10 HOH A 105 605 30 HOH HOH . 
AB 10 HOH A 106 606 68 HOH HOH . 
AB 10 HOH A 107 607 22 HOH HOH . 
AB 10 HOH A 108 608 7 HOH HOH . 
AB 10 HOH A 109 609 112 HOH HOH . 
AB 10 HOH A 110 610 38 HOH HOH . 
AB 10 HOH A 111 611 54 HOH HOH . 
AB 10 HOH A 112 612 55 HOH HOH . 
AB 10 HOH A 113 613 88 HOH HOH . 
AB 10 HOH A 114 614 11 HOH HOH . 
AB 10 HOH A 115 615 77 HOH HOH . 
AB 10 HOH A 116 616 27 HOH HOH . 
AB 10 HOH A 117 617 126 HOH HOH . 
AB 10 HOH A 118 618 97 HOH HOH . 
AB 10 HOH A 119 619 141 HOH HOH . 
AB 10 HOH A 120 620 111 HOH HOH . 
AB 10 HOH A 121 621 80 HOH HOH . 
AB 10 HOH A 122 622 125 HOH HOH . 
AB 10 HOH A 123 623 139 HOH HOH . 
AB 10 HOH A 124 624 157 HOH HOH . 
AB 10 HOH A 125 625 69 HOH HOH . 
AB 10 HOH A 126 626 142 HOH HOH . 
AB 10 HOH A 127 627 14 HOH HOH . 
AB 10 HOH A 128 628 81 HOH HOH . 
AB 10 HOH A 129 629 8 HOH HOH . 
AB 10 HOH A 130 630 144 HOH HOH . 
AB 10 HOH A 131 631 89 HOH HOH . 
AB 10 HOH A 132 632 92 HOH HOH . 
AB 10 HOH A 133 633 50 HOH HOH . 
AB 10 HOH A 134 634 98 HOH HOH . 
AB 10 HOH A 135 635 151 HOH HOH . 
AB 10 HOH A 136 636 67 HOH HOH . 
AB 10 HOH A 137 637 115 HOH HOH . 
AB 10 HOH A 138 638 96 HOH HOH . 
AB 10 HOH A 139 639 63 HOH HOH . 
AB 10 HOH A 140 640 110 HOH HOH . 
AB 10 HOH A 141 641 123 HOH HOH . 
AB 10 HOH A 142 642 121 HOH HOH . 
AB 10 HOH A 143 643 94 HOH HOH . 
AB 10 HOH A 144 644 132 HOH HOH . 
AB 10 HOH A 145 645 85 HOH HOH . 
AB 10 HOH A 146 646 150 HOH HOH . 
AB 10 HOH A 147 647 59 HOH HOH . 
AB 10 HOH A 148 648 147 HOH HOH . 
AB 10 HOH A 149 649 155 HOH HOH . 
AB 10 HOH A 150 650 79 HOH HOH . 
AB 10 HOH A 151 651 87 HOH HOH . 
AB 10 HOH A 152 652 107 HOH HOH . 
AB 10 HOH A 153 653 105 HOH HOH . 
AB 10 HOH A 154 654 152 HOH HOH . 
AB 10 HOH A 155 655 154 HOH HOH . 
AB 10 HOH A 156 656 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . Y 5 -11.285 -5.054 -14.605 1 91.67 ? P PO4 424 A 1 
HETATM 2 O O1 PO4 . . . Y 5 -10.171 -4.613 -15.54 1 61.85 ? O1 PO4 424 A 1 
HETATM 3 O O2 PO4 . . . Y 5 -12.119 -6.162 -15.23 1 63.77 ? O2 PO4 424 A 1 
HETATM 4 O O3 PO4 . . . Y 5 -12.191 -3.88 -14.322 1 87.15 ? O3 PO4 424 A 1 
HETATM 5 O O4 PO4 . . . Y 5 -10.689 -5.525 -13.294 1 56.02 ? O4 PO4 424 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#