data_6JD5 # _model_server_result.job_id BXenKuPTcU8vIxPStgLirg _model_server_result.datetime_utc '2024-11-13 00:25:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1402}' # _entry.id 6JD5 # _exptl.entry_id 6JD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.57 _cell.angle_gamma 90 _cell.entry_id 6JD5 _cell.length_a 51.449 _cell.length_b 69.691 _cell.length_c 75.963 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 69 A THR 1191 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 C O1G ATP . A ATP 1401 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 C O1B ATP . A ATP 1401 1_555 D MG MG . A MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 D MG MG . A MG 1402 1_555 G O HOH . A HOH 1528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc5 D MG MG . A MG 1402 1_555 G O HOH . A HOH 1536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 D MG MG . A MG 1402 1_555 G O HOH . A HOH 1539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc7 B OG1 THR 69 B THR 1191 1_555 F MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc8 E O1G ATP . B ATP 1401 1_555 F MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc9 E O1B ATP . B ATP 1401 1_555 F MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc10 F MG MG . B MG 1402 1_555 H O HOH . B HOH 1516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc11 F MG MG . B MG 1402 1_555 H O HOH . B HOH 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc12 F MG MG . B MG 1402 1_555 H O HOH . B HOH 1553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JD5 _atom_sites.fract_transf_matrix[1][1] 0.019437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 1401 2 ATP ATP . D 3 MG A 1 1402 2 MG MG . E 2 ATP B 1 1401 1 ATP ATP . F 3 MG B 1 1402 1 MG MG . G 4 HOH A 1 1501 26 HOH HOH . G 4 HOH A 2 1502 182 HOH HOH . G 4 HOH A 3 1503 199 HOH HOH . G 4 HOH A 4 1504 19 HOH HOH . G 4 HOH A 5 1505 114 HOH HOH . G 4 HOH A 6 1506 122 HOH HOH . G 4 HOH A 7 1507 134 HOH HOH . G 4 HOH A 8 1508 18 HOH HOH . G 4 HOH A 9 1509 90 HOH HOH . G 4 HOH A 10 1510 176 HOH HOH . G 4 HOH A 11 1511 14 HOH HOH . G 4 HOH A 12 1512 210 HOH HOH . G 4 HOH A 13 1513 211 HOH HOH . G 4 HOH A 14 1514 27 HOH HOH . G 4 HOH A 15 1515 83 HOH HOH . G 4 HOH A 16 1516 12 HOH HOH . G 4 HOH A 17 1517 65 HOH HOH . G 4 HOH A 18 1518 160 HOH HOH . G 4 HOH A 19 1519 110 HOH HOH . G 4 HOH A 20 1520 58 HOH HOH . G 4 HOH A 21 1521 169 HOH HOH . G 4 HOH A 22 1522 215 HOH HOH . G 4 HOH A 23 1523 1 HOH HOH . G 4 HOH A 24 1524 15 HOH HOH . G 4 HOH A 25 1525 35 HOH HOH . G 4 HOH A 26 1526 29 HOH HOH . G 4 HOH A 27 1527 22 HOH HOH . G 4 HOH A 28 1528 9 HOH HOH . G 4 HOH A 29 1529 116 HOH HOH . G 4 HOH A 30 1530 88 HOH HOH . G 4 HOH A 31 1531 43 HOH HOH . G 4 HOH A 32 1532 145 HOH HOH . G 4 HOH A 33 1533 47 HOH HOH . G 4 HOH A 34 1534 63 HOH HOH . G 4 HOH A 35 1535 13 HOH HOH . G 4 HOH A 36 1536 8 HOH HOH . G 4 HOH A 37 1537 44 HOH HOH . G 4 HOH A 38 1538 183 HOH HOH . G 4 HOH A 39 1539 2 HOH HOH . G 4 HOH A 40 1540 4 HOH HOH . G 4 HOH A 41 1541 39 HOH HOH . G 4 HOH A 42 1542 46 HOH HOH . G 4 HOH A 43 1543 10 HOH HOH . G 4 HOH A 44 1544 81 HOH HOH . G 4 HOH A 45 1545 94 HOH HOH . G 4 HOH A 46 1546 80 HOH HOH . G 4 HOH A 47 1547 162 HOH HOH . G 4 HOH A 48 1548 79 HOH HOH . G 4 HOH A 49 1549 57 HOH HOH . G 4 HOH A 50 1550 38 HOH HOH . G 4 HOH A 51 1551 91 HOH HOH . G 4 HOH A 52 1552 21 HOH HOH . G 4 HOH A 53 1553 143 HOH HOH . G 4 HOH A 54 1554 129 HOH HOH . G 4 HOH A 55 1555 16 HOH HOH . G 4 HOH A 56 1556 45 HOH HOH . G 4 HOH A 57 1557 131 HOH HOH . G 4 HOH A 58 1558 84 HOH HOH . G 4 HOH A 59 1559 115 HOH HOH . G 4 HOH A 60 1560 95 HOH HOH . G 4 HOH A 61 1561 25 HOH HOH . G 4 HOH A 62 1562 49 HOH HOH . G 4 HOH A 63 1563 113 HOH HOH . G 4 HOH A 64 1564 120 HOH HOH . G 4 HOH A 65 1565 98 HOH HOH . G 4 HOH A 66 1566 127 HOH HOH . G 4 HOH A 67 1567 112 HOH HOH . G 4 HOH A 68 1568 161 HOH HOH . G 4 HOH A 69 1569 89 HOH HOH . G 4 HOH A 70 1570 76 HOH HOH . G 4 HOH A 71 1571 181 HOH HOH . G 4 HOH A 72 1572 109 HOH HOH . G 4 HOH A 73 1573 123 HOH HOH . G 4 HOH A 74 1574 212 HOH HOH . G 4 HOH A 75 1575 144 HOH HOH . G 4 HOH A 76 1576 187 HOH HOH . G 4 HOH A 77 1577 189 HOH HOH . G 4 HOH A 78 1578 152 HOH HOH . G 4 HOH A 79 1579 155 HOH HOH . G 4 HOH A 80 1580 139 HOH HOH . G 4 HOH A 81 1581 56 HOH HOH . G 4 HOH A 82 1582 149 HOH HOH . G 4 HOH A 83 1583 130 HOH HOH . G 4 HOH A 84 1584 133 HOH HOH . G 4 HOH A 85 1585 48 HOH HOH . G 4 HOH A 86 1586 168 HOH HOH . G 4 HOH A 87 1587 171 HOH HOH . G 4 HOH A 88 1588 170 HOH HOH . G 4 HOH A 89 1589 52 HOH HOH . G 4 HOH A 90 1590 119 HOH HOH . G 4 HOH A 91 1591 128 HOH HOH . G 4 HOH A 92 1592 154 HOH HOH . G 4 HOH A 93 1593 148 HOH HOH . G 4 HOH A 94 1594 132 HOH HOH . G 4 HOH A 95 1595 146 HOH HOH . G 4 HOH A 96 1596 200 HOH HOH . G 4 HOH A 97 1597 216 HOH HOH . G 4 HOH A 98 1598 205 HOH HOH . G 4 HOH A 99 1599 174 HOH HOH . G 4 HOH A 100 1600 101 HOH HOH . G 4 HOH A 101 1601 140 HOH HOH . G 4 HOH A 102 1602 153 HOH HOH . G 4 HOH A 103 1603 136 HOH HOH . G 4 HOH A 104 1604 71 HOH HOH . G 4 HOH A 105 1605 167 HOH HOH . G 4 HOH A 106 1606 157 HOH HOH . G 4 HOH A 107 1607 147 HOH HOH . G 4 HOH A 108 1608 150 HOH HOH . G 4 HOH A 109 1609 184 HOH HOH . G 4 HOH A 110 1610 190 HOH HOH . G 4 HOH A 111 1611 111 HOH HOH . G 4 HOH A 112 1612 165 HOH HOH . G 4 HOH A 113 1613 188 HOH HOH . G 4 HOH A 114 1614 180 HOH HOH . G 4 HOH A 115 1615 195 HOH HOH . H 4 HOH B 1 1501 213 HOH HOH . H 4 HOH B 2 1502 177 HOH HOH . H 4 HOH B 3 1503 193 HOH HOH . H 4 HOH B 4 1504 67 HOH HOH . H 4 HOH B 5 1505 125 HOH HOH . H 4 HOH B 6 1506 33 HOH HOH . H 4 HOH B 7 1507 107 HOH HOH . H 4 HOH B 8 1508 86 HOH HOH . H 4 HOH B 9 1509 158 HOH HOH . H 4 HOH B 10 1510 156 HOH HOH . H 4 HOH B 11 1511 93 HOH HOH . H 4 HOH B 12 1512 31 HOH HOH . H 4 HOH B 13 1513 28 HOH HOH . H 4 HOH B 14 1514 50 HOH HOH . H 4 HOH B 15 1515 59 HOH HOH . H 4 HOH B 16 1516 6 HOH HOH . H 4 HOH B 17 1517 142 HOH HOH . H 4 HOH B 18 1518 61 HOH HOH . H 4 HOH B 19 1519 106 HOH HOH . H 4 HOH B 20 1520 7 HOH HOH . H 4 HOH B 21 1521 42 HOH HOH . H 4 HOH B 22 1522 20 HOH HOH . H 4 HOH B 23 1523 100 HOH HOH . H 4 HOH B 24 1524 64 HOH HOH . H 4 HOH B 25 1525 126 HOH HOH . H 4 HOH B 26 1526 72 HOH HOH . H 4 HOH B 27 1527 103 HOH HOH . H 4 HOH B 28 1528 41 HOH HOH . H 4 HOH B 29 1529 53 HOH HOH . H 4 HOH B 30 1530 78 HOH HOH . H 4 HOH B 31 1531 55 HOH HOH . H 4 HOH B 32 1532 68 HOH HOH . H 4 HOH B 33 1533 51 HOH HOH . H 4 HOH B 34 1534 11 HOH HOH . H 4 HOH B 35 1535 17 HOH HOH . H 4 HOH B 36 1536 207 HOH HOH . H 4 HOH B 37 1537 23 HOH HOH . H 4 HOH B 38 1538 32 HOH HOH . H 4 HOH B 39 1539 3 HOH HOH . H 4 HOH B 40 1540 73 HOH HOH . H 4 HOH B 41 1541 104 HOH HOH . H 4 HOH B 42 1542 37 HOH HOH . H 4 HOH B 43 1543 66 HOH HOH . H 4 HOH B 44 1544 87 HOH HOH . H 4 HOH B 45 1545 5 HOH HOH . H 4 HOH B 46 1546 24 HOH HOH . H 4 HOH B 47 1547 77 HOH HOH . H 4 HOH B 48 1548 164 HOH HOH . H 4 HOH B 49 1549 202 HOH HOH . H 4 HOH B 50 1550 118 HOH HOH . H 4 HOH B 51 1551 96 HOH HOH . H 4 HOH B 52 1552 179 HOH HOH . H 4 HOH B 53 1553 185 HOH HOH . H 4 HOH B 54 1554 108 HOH HOH . H 4 HOH B 55 1555 60 HOH HOH . H 4 HOH B 56 1556 70 HOH HOH . H 4 HOH B 57 1557 138 HOH HOH . H 4 HOH B 58 1558 124 HOH HOH . H 4 HOH B 59 1559 105 HOH HOH . H 4 HOH B 60 1560 69 HOH HOH . H 4 HOH B 61 1561 166 HOH HOH . H 4 HOH B 62 1562 163 HOH HOH . H 4 HOH B 63 1563 92 HOH HOH . H 4 HOH B 64 1564 40 HOH HOH . H 4 HOH B 65 1565 102 HOH HOH . H 4 HOH B 66 1566 85 HOH HOH . H 4 HOH B 67 1567 117 HOH HOH . H 4 HOH B 68 1568 172 HOH HOH . H 4 HOH B 69 1569 74 HOH HOH . H 4 HOH B 70 1570 30 HOH HOH . H 4 HOH B 71 1571 34 HOH HOH . H 4 HOH B 72 1572 36 HOH HOH . H 4 HOH B 73 1573 178 HOH HOH . H 4 HOH B 74 1574 141 HOH HOH . H 4 HOH B 75 1575 159 HOH HOH . H 4 HOH B 76 1576 186 HOH HOH . H 4 HOH B 77 1577 75 HOH HOH . H 4 HOH B 78 1578 121 HOH HOH . H 4 HOH B 79 1579 197 HOH HOH . H 4 HOH B 80 1580 82 HOH HOH . H 4 HOH B 81 1581 203 HOH HOH . H 4 HOH B 82 1582 54 HOH HOH . H 4 HOH B 83 1583 151 HOH HOH . H 4 HOH B 84 1584 191 HOH HOH . H 4 HOH B 85 1585 97 HOH HOH . H 4 HOH B 86 1586 206 HOH HOH . H 4 HOH B 87 1587 135 HOH HOH . H 4 HOH B 88 1588 214 HOH HOH . H 4 HOH B 89 1589 62 HOH HOH . H 4 HOH B 90 1590 209 HOH HOH . H 4 HOH B 91 1591 196 HOH HOH . H 4 HOH B 92 1592 173 HOH HOH . H 4 HOH B 93 1593 192 HOH HOH . H 4 HOH B 94 1594 99 HOH HOH . H 4 HOH B 95 1595 204 HOH HOH . H 4 HOH B 96 1596 175 HOH HOH . H 4 HOH B 97 1597 137 HOH HOH . H 4 HOH B 98 1598 201 HOH HOH . H 4 HOH B 99 1599 194 HOH HOH . H 4 HOH B 100 1600 208 HOH HOH . H 4 HOH B 101 1601 198 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.431 _atom_site.Cartn_y 46.502 _atom_site.Cartn_z 32.209 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #