data_6JD8 # _model_server_result.job_id 0s18YVLFl5qatxvaoXVzxA _model_server_result.datetime_utc '2024-11-26 22:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":415}' # _entry.id 6JD8 # _exptl.entry_id 6JD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JD8 _cell.length_a 42.22 _cell.length_b 67.584 _cell.length_c 103.239 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 118 1_555 A SG CYS 205 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 196 A CYS 152 1_555 A SG CYS 238 A CYS 194 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 196 A CYS 152 1_555 A SG CYS 238 A CYS 194 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 296 A CYS 252 1_555 A SG CYS 349 A CYS 305 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 296 A CYS 252 1_555 A SG CYS 349 A CYS 305 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6JD8 _atom_sites.fract_transf_matrix[1][1] 0.023685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 3 EOH A 1 402 1 EOH EOH . D 3 EOH A 1 403 2 EOH EOH . E 3 EOH A 1 404 4 EOH EOH . F 3 EOH A 1 405 5 EOH EOH . G 3 EOH A 1 406 6 EOH EOH . H 3 EOH A 1 407 7 EOH EOH . I 3 EOH A 1 408 8 EOH EOH . J 3 EOH A 1 409 9 EOH EOH . K 3 EOH A 1 410 11 EOH EOH . L 3 EOH A 1 411 13 EOH EOH . M 3 EOH A 1 412 14 EOH EOH . N 3 EOH A 1 413 15 EOH EOH . O 4 PEG A 1 414 1 PEG PEG . P 5 EDO A 1 415 1 EDO EDO . Q 6 PGE A 1 416 1 PGE PGE . R 7 HOH A 1 501 169 HOH HOH . R 7 HOH A 2 502 205 HOH HOH . R 7 HOH A 3 503 210 HOH HOH . R 7 HOH A 4 504 182 HOH HOH . R 7 HOH A 5 505 54 HOH HOH . R 7 HOH A 6 506 173 HOH HOH . R 7 HOH A 7 507 226 HOH HOH . R 7 HOH A 8 508 24 HOH HOH . R 7 HOH A 9 509 175 HOH HOH . R 7 HOH A 10 510 51 HOH HOH . R 7 HOH A 11 511 44 HOH HOH . R 7 HOH A 12 512 105 HOH HOH . R 7 HOH A 13 513 65 HOH HOH . R 7 HOH A 14 514 114 HOH HOH . R 7 HOH A 15 515 95 HOH HOH . R 7 HOH A 16 516 81 HOH HOH . R 7 HOH A 17 517 214 HOH HOH . R 7 HOH A 18 518 134 HOH HOH . R 7 HOH A 19 519 61 HOH HOH . R 7 HOH A 20 520 69 HOH HOH . R 7 HOH A 21 521 46 HOH HOH . R 7 HOH A 22 522 76 HOH HOH . R 7 HOH A 23 523 216 HOH HOH . R 7 HOH A 24 524 198 HOH HOH . R 7 HOH A 25 525 42 HOH HOH . R 7 HOH A 26 526 153 HOH HOH . R 7 HOH A 27 527 78 HOH HOH . R 7 HOH A 28 528 34 HOH HOH . R 7 HOH A 29 529 163 HOH HOH . R 7 HOH A 30 530 140 HOH HOH . R 7 HOH A 31 531 217 HOH HOH . R 7 HOH A 32 532 18 HOH HOH . R 7 HOH A 33 533 89 HOH HOH . R 7 HOH A 34 534 159 HOH HOH . R 7 HOH A 35 535 125 HOH HOH . R 7 HOH A 36 536 207 HOH HOH . R 7 HOH A 37 537 174 HOH HOH . R 7 HOH A 38 538 71 HOH HOH . R 7 HOH A 39 539 177 HOH HOH . R 7 HOH A 40 540 103 HOH HOH . R 7 HOH A 41 541 83 HOH HOH . R 7 HOH A 42 542 220 HOH HOH . R 7 HOH A 43 543 23 HOH HOH . R 7 HOH A 44 544 187 HOH HOH . R 7 HOH A 45 545 113 HOH HOH . R 7 HOH A 46 546 101 HOH HOH . R 7 HOH A 47 547 25 HOH HOH . R 7 HOH A 48 548 151 HOH HOH . R 7 HOH A 49 549 188 HOH HOH . R 7 HOH A 50 550 9 HOH HOH . R 7 HOH A 51 551 30 HOH HOH . R 7 HOH A 52 552 2 HOH HOH . R 7 HOH A 53 553 94 HOH HOH . R 7 HOH A 54 554 84 HOH HOH . R 7 HOH A 55 555 87 HOH HOH . R 7 HOH A 56 556 68 HOH HOH . R 7 HOH A 57 557 157 HOH HOH . R 7 HOH A 58 558 82 HOH HOH . R 7 HOH A 59 559 193 HOH HOH . R 7 HOH A 60 560 35 HOH HOH . R 7 HOH A 61 561 148 HOH HOH . R 7 HOH A 62 562 10 HOH HOH . R 7 HOH A 63 563 96 HOH HOH . R 7 HOH A 64 564 127 HOH HOH . R 7 HOH A 65 565 206 HOH HOH . R 7 HOH A 66 566 33 HOH HOH . R 7 HOH A 67 567 215 HOH HOH . R 7 HOH A 68 568 123 HOH HOH . R 7 HOH A 69 569 208 HOH HOH . R 7 HOH A 70 570 146 HOH HOH . R 7 HOH A 71 571 202 HOH HOH . R 7 HOH A 72 572 186 HOH HOH . R 7 HOH A 73 573 221 HOH HOH . R 7 HOH A 74 574 227 HOH HOH . R 7 HOH A 75 575 183 HOH HOH . R 7 HOH A 76 576 142 HOH HOH . R 7 HOH A 77 577 161 HOH HOH . R 7 HOH A 78 578 209 HOH HOH . R 7 HOH A 79 579 167 HOH HOH . R 7 HOH A 80 580 40 HOH HOH . R 7 HOH A 81 581 7 HOH HOH . R 7 HOH A 82 582 112 HOH HOH . R 7 HOH A 83 583 53 HOH HOH . R 7 HOH A 84 584 170 HOH HOH . R 7 HOH A 85 585 14 HOH HOH . R 7 HOH A 86 586 43 HOH HOH . R 7 HOH A 87 587 16 HOH HOH . R 7 HOH A 88 588 73 HOH HOH . R 7 HOH A 89 589 56 HOH HOH . R 7 HOH A 90 590 70 HOH HOH . R 7 HOH A 91 591 80 HOH HOH . R 7 HOH A 92 592 1 HOH HOH . R 7 HOH A 93 593 201 HOH HOH . R 7 HOH A 94 594 13 HOH HOH . R 7 HOH A 95 595 28 HOH HOH . R 7 HOH A 96 596 27 HOH HOH . R 7 HOH A 97 597 85 HOH HOH . R 7 HOH A 98 598 139 HOH HOH . R 7 HOH A 99 599 67 HOH HOH . R 7 HOH A 100 600 29 HOH HOH . R 7 HOH A 101 601 79 HOH HOH . R 7 HOH A 102 602 47 HOH HOH . R 7 HOH A 103 603 195 HOH HOH . R 7 HOH A 104 604 48 HOH HOH . R 7 HOH A 105 605 3 HOH HOH . R 7 HOH A 106 606 144 HOH HOH . R 7 HOH A 107 607 92 HOH HOH . R 7 HOH A 108 608 104 HOH HOH . R 7 HOH A 109 609 32 HOH HOH . R 7 HOH A 110 610 116 HOH HOH . R 7 HOH A 111 611 4 HOH HOH . R 7 HOH A 112 612 5 HOH HOH . R 7 HOH A 113 613 199 HOH HOH . R 7 HOH A 114 614 158 HOH HOH . R 7 HOH A 115 615 143 HOH HOH . R 7 HOH A 116 616 11 HOH HOH . R 7 HOH A 117 617 26 HOH HOH . R 7 HOH A 118 618 20 HOH HOH . R 7 HOH A 119 619 45 HOH HOH . R 7 HOH A 120 620 180 HOH HOH . R 7 HOH A 121 621 128 HOH HOH . R 7 HOH A 122 622 150 HOH HOH . R 7 HOH A 123 623 6 HOH HOH . R 7 HOH A 124 624 63 HOH HOH . R 7 HOH A 125 625 66 HOH HOH . R 7 HOH A 126 626 31 HOH HOH . R 7 HOH A 127 627 36 HOH HOH . R 7 HOH A 128 628 8 HOH HOH . R 7 HOH A 129 629 155 HOH HOH . R 7 HOH A 130 630 228 HOH HOH . R 7 HOH A 131 631 75 HOH HOH . R 7 HOH A 132 632 181 HOH HOH . R 7 HOH A 133 633 12 HOH HOH . R 7 HOH A 134 634 124 HOH HOH . R 7 HOH A 135 635 152 HOH HOH . R 7 HOH A 136 636 156 HOH HOH . R 7 HOH A 137 637 64 HOH HOH . R 7 HOH A 138 638 19 HOH HOH . R 7 HOH A 139 639 168 HOH HOH . R 7 HOH A 140 640 62 HOH HOH . R 7 HOH A 141 641 90 HOH HOH . R 7 HOH A 142 642 203 HOH HOH . R 7 HOH A 143 643 98 HOH HOH . R 7 HOH A 144 644 166 HOH HOH . R 7 HOH A 145 645 145 HOH HOH . R 7 HOH A 146 646 129 HOH HOH . R 7 HOH A 147 647 17 HOH HOH . R 7 HOH A 148 648 110 HOH HOH . R 7 HOH A 149 649 22 HOH HOH . R 7 HOH A 150 650 60 HOH HOH . R 7 HOH A 151 651 117 HOH HOH . R 7 HOH A 152 652 97 HOH HOH . R 7 HOH A 153 653 59 HOH HOH . R 7 HOH A 154 654 185 HOH HOH . R 7 HOH A 155 655 41 HOH HOH . R 7 HOH A 156 656 164 HOH HOH . R 7 HOH A 157 657 111 HOH HOH . R 7 HOH A 158 658 218 HOH HOH . R 7 HOH A 159 659 15 HOH HOH . R 7 HOH A 160 660 77 HOH HOH . R 7 HOH A 161 661 55 HOH HOH . R 7 HOH A 162 662 178 HOH HOH . R 7 HOH A 163 663 189 HOH HOH . R 7 HOH A 164 664 222 HOH HOH . R 7 HOH A 165 665 160 HOH HOH . R 7 HOH A 166 666 49 HOH HOH . R 7 HOH A 167 667 149 HOH HOH . R 7 HOH A 168 668 120 HOH HOH . R 7 HOH A 169 669 141 HOH HOH . R 7 HOH A 170 670 194 HOH HOH . R 7 HOH A 171 671 107 HOH HOH . R 7 HOH A 172 672 39 HOH HOH . R 7 HOH A 173 673 133 HOH HOH . R 7 HOH A 174 674 108 HOH HOH . R 7 HOH A 175 675 191 HOH HOH . R 7 HOH A 176 676 171 HOH HOH . R 7 HOH A 177 677 74 HOH HOH . R 7 HOH A 178 678 102 HOH HOH . R 7 HOH A 179 679 196 HOH HOH . R 7 HOH A 180 680 197 HOH HOH . R 7 HOH A 181 681 219 HOH HOH . R 7 HOH A 182 682 118 HOH HOH . R 7 HOH A 183 683 126 HOH HOH . R 7 HOH A 184 684 109 HOH HOH . R 7 HOH A 185 685 52 HOH HOH . R 7 HOH A 186 686 93 HOH HOH . R 7 HOH A 187 687 165 HOH HOH . R 7 HOH A 188 688 58 HOH HOH . R 7 HOH A 189 689 135 HOH HOH . R 7 HOH A 190 690 106 HOH HOH . R 7 HOH A 191 691 136 HOH HOH . R 7 HOH A 192 692 21 HOH HOH . R 7 HOH A 193 693 100 HOH HOH . R 7 HOH A 194 694 204 HOH HOH . R 7 HOH A 195 695 138 HOH HOH . R 7 HOH A 196 696 223 HOH HOH . R 7 HOH A 197 697 91 HOH HOH . R 7 HOH A 198 698 122 HOH HOH . R 7 HOH A 199 699 88 HOH HOH . R 7 HOH A 200 700 57 HOH HOH . R 7 HOH A 201 701 213 HOH HOH . R 7 HOH A 202 702 147 HOH HOH . R 7 HOH A 203 703 212 HOH HOH . R 7 HOH A 204 704 121 HOH HOH . R 7 HOH A 205 705 72 HOH HOH . R 7 HOH A 206 706 162 HOH HOH . R 7 HOH A 207 707 192 HOH HOH . R 7 HOH A 208 708 224 HOH HOH . R 7 HOH A 209 709 184 HOH HOH . R 7 HOH A 210 710 176 HOH HOH . R 7 HOH A 211 711 211 HOH HOH . R 7 HOH A 212 712 190 HOH HOH . R 7 HOH A 213 713 131 HOH HOH . R 7 HOH A 214 714 50 HOH HOH . R 7 HOH A 215 715 38 HOH HOH . R 7 HOH A 216 716 86 HOH HOH . R 7 HOH A 217 717 154 HOH HOH . R 7 HOH A 218 718 137 HOH HOH . R 7 HOH A 219 719 99 HOH HOH . R 7 HOH A 220 720 200 HOH HOH . R 7 HOH A 221 721 37 HOH HOH . R 7 HOH A 222 722 119 HOH HOH . R 7 HOH A 223 723 179 HOH HOH . R 7 HOH A 224 724 130 HOH HOH . R 7 HOH A 225 725 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . P 5 -25.473 -8.447 20.979 1 57.56 ? C1 EDO 415 A 1 HETATM 2 O O1 EDO . . . P 5 -26.175 -8.825 22.162 1 60.01 ? O1 EDO 415 A 1 HETATM 3 C C2 EDO . . . P 5 -26.103 -9.111 19.786 1 46.24 ? C2 EDO 415 A 1 HETATM 4 O O2 EDO . . . P 5 -27.527 -9.16 19.943 1 47 ? O2 EDO 415 A 1 HETATM 5 H H11 EDO . . . P 5 -25.509 -7.362 20.859 1 69.11 ? H11 EDO 415 A 1 HETATM 6 H H12 EDO . . . P 5 -24.426 -8.747 21.058 1 69.11 ? H12 EDO 415 A 1 HETATM 7 H HO1 EDO . . . P 5 -25.769 -8.397 22.928 1 72.05 ? HO1 EDO 415 A 1 HETATM 8 H H21 EDO . . . P 5 -25.852 -8.554 18.881 1 55.52 ? H21 EDO 415 A 1 HETATM 9 H H22 EDO . . . P 5 -25.71 -10.124 19.68 1 55.52 ? H22 EDO 415 A 1 HETATM 10 H HO2 EDO . . . P 5 -27.922 -9.589 19.171 1 56.43 ? HO2 EDO 415 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #