data_6JDC
#
_model_server_result.job_id            lwXEIVi5sFpafm4ziQEfAw 
_model_server_result.datetime_utc      '2024-11-24 01:25:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6JDC 
#
_exptl.entry_id    6JDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JDC 
_cell.length_a            91.102 
_cell.length_b            91.102 
_cell.length_c            184.033 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 91.102 91.102 184.033 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 156 A HIS 156 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc2 A SG CYS 166 A CYS 166 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc3 A SG CYS 168 A CYS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 A SG CYS 173 A CYS 173 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                BM3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-mannosamine;2-acetamido-2-deoxy-alpha-D-mannose;2-acetamido-2-deoxy-D-mannose;2-acetamido-2-deoxy-mannose;2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BM3 sing 70 n n 
C1 C2 BM3 sing 71 n n 
C1 O5 BM3 sing 72 n n 
C1 H1 BM3 sing 73 n n 
O1 HO1 BM3 sing 74 n n 
C2 N2 BM3 sing 75 n n 
C2 C3 BM3 sing 76 n n 
C2 H2 BM3 sing 77 n n 
N2 C7 BM3 sing 78 n n 
N2 HN2 BM3 sing 79 n n 
C7 O7 BM3 doub 80 n n 
C7 C8 BM3 sing 81 n n 
C8 H81 BM3 sing 82 n n 
C8 H82 BM3 sing 83 n n 
C8 H83 BM3 sing 84 n n 
C3 O3 BM3 sing 85 n n 
C3 C4 BM3 sing 86 n n 
C3 H3 BM3 sing 87 n n 
O3 HO3 BM3 sing 88 n n 
C4 O4 BM3 sing 89 n n 
C4 C5 BM3 sing 90 n n 
C4 H4 BM3 sing 91 n n 
O4 HO4 BM3 sing 92 n n 
C5 C6 BM3 sing 93 n n 
C5 O5 BM3 sing 94 n n 
C5 H5 BM3 sing 95 n n 
C6 O6 BM3 sing 96 n n 
C6 H61 BM3 sing 97 n n 
C6 H62 BM3 sing 98 n n 
O6 HO6 BM3 sing 99 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BM3 DManpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BM3 N-acetyl-a-D-mannopyranosamine 'COMMON NAME' GMML 1 
BM3 a-D-ManpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BM3 ManNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6JDC 
_atom_sites.fract_transf_matrix[1][1]    0.010977 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005434 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BM3 A 1 301 1 BM3 BM3 . 
C 3 ZN A 1 302 1 ZN ZN . 
D 4 HOH A 1 401 6 HOH HOH . 
D 4 HOH A 2 402 19 HOH HOH . 
D 4 HOH A 3 403 11 HOH HOH . 
D 4 HOH A 4 404 2 HOH HOH . 
D 4 HOH A 5 405 29 HOH HOH . 
D 4 HOH A 6 406 22 HOH HOH . 
D 4 HOH A 7 407 38 HOH HOH . 
D 4 HOH A 8 408 30 HOH HOH . 
D 4 HOH A 9 409 18 HOH HOH . 
D 4 HOH A 10 410 16 HOH HOH . 
D 4 HOH A 11 411 44 HOH HOH . 
D 4 HOH A 12 412 34 HOH HOH . 
D 4 HOH A 13 413 3 HOH HOH . 
D 4 HOH A 14 414 23 HOH HOH . 
D 4 HOH A 15 415 40 HOH HOH . 
D 4 HOH A 16 416 32 HOH HOH . 
D 4 HOH A 17 417 42 HOH HOH . 
D 4 HOH A 18 418 20 HOH HOH . 
D 4 HOH A 19 419 5 HOH HOH . 
D 4 HOH A 20 420 7 HOH HOH . 
D 4 HOH A 21 421 12 HOH HOH . 
D 4 HOH A 22 422 31 HOH HOH . 
D 4 HOH A 23 423 10 HOH HOH . 
D 4 HOH A 24 424 41 HOH HOH . 
D 4 HOH A 25 425 1 HOH HOH . 
D 4 HOH A 26 426 14 HOH HOH . 
D 4 HOH A 27 427 21 HOH HOH . 
D 4 HOH A 28 428 4 HOH HOH . 
D 4 HOH A 29 429 17 HOH HOH . 
D 4 HOH A 30 430 27 HOH HOH . 
D 4 HOH A 31 431 49 HOH HOH . 
D 4 HOH A 32 432 52 HOH HOH . 
D 4 HOH A 33 433 54 HOH HOH . 
D 4 HOH A 34 434 48 HOH HOH . 
D 4 HOH A 35 435 36 HOH HOH . 
D 4 HOH A 36 436 8 HOH HOH . 
D 4 HOH A 37 437 15 HOH HOH . 
D 4 HOH A 38 438 26 HOH HOH . 
D 4 HOH A 39 439 13 HOH HOH . 
D 4 HOH A 40 440 37 HOH HOH . 
D 4 HOH A 41 441 24 HOH HOH . 
D 4 HOH A 42 442 51 HOH HOH . 
D 4 HOH A 43 443 33 HOH HOH . 
D 4 HOH A 44 444 9 HOH HOH . 
D 4 HOH A 45 445 39 HOH HOH . 
D 4 HOH A 46 446 55 HOH HOH . 
D 4 HOH A 47 447 50 HOH HOH . 
D 4 HOH A 48 448 53 HOH HOH . 
D 4 HOH A 49 449 47 HOH HOH . 
D 4 HOH A 50 450 28 HOH HOH . 
D 4 HOH A 51 451 35 HOH HOH . 
D 4 HOH A 52 452 45 HOH HOH . 
D 4 HOH A 53 453 25 HOH HOH . 
D 4 HOH A 54 454 46 HOH HOH . 
D 4 HOH A 55 455 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BM3 . . . B 2 18.006 56.837 81.066 1 35.83 ? C1 BM3 301 A 1 
HETATM 2 O O1 BM3 . . . B 2 18.992 57.077 81.97 1 40.32 ? O1 BM3 301 A 1 
HETATM 3 C C2 BM3 . . . B 2 17.481 58.122 80.444 1 34.99 ? C2 BM3 301 A 1 
HETATM 4 N N2 BM3 . . . B 2 16.712 57.612 79.264 1 34.89 ? N2 BM3 301 A 1 
HETATM 5 C C7 BM3 . . . B 2 17.324 57.546 77.932 1 35.9 ? C7 BM3 301 A 1 
HETATM 6 O O7 BM3 . . . B 2 18.441 57.933 77.765 1 34.66 ? O7 BM3 301 A 1 
HETATM 7 C C8 BM3 . . . B 2 16.5 56.99 76.756 1 33.34 ? C8 BM3 301 A 1 
HETATM 8 C C3 BM3 . . . B 2 16.602 58.92 81.343 1 31.54 ? C3 BM3 301 A 1 
HETATM 9 O O3 BM3 . . . B 2 15.965 59.978 80.57 1 24.4 ? O3 BM3 301 A 1 
HETATM 10 C C4 BM3 . . . B 2 15.525 58.079 81.961 1 27.59 ? C4 BM3 301 A 1 
HETATM 11 O O4 BM3 . . . B 2 14.79 58.83 82.927 1 28.75 ? O4 BM3 301 A 1 
HETATM 12 C C5 BM3 . . . B 2 16.113 56.871 82.668 1 31.73 ? C5 BM3 301 A 1 
HETATM 13 C C6 BM3 . . . B 2 14.987 56.056 83.25 1 30.52 ? C6 BM3 301 A 1 
HETATM 14 O O6 BM3 . . . B 2 13.855 56.106 82.412 1 31.28 ? O6 BM3 301 A 1 
HETATM 15 O O5 BM3 . . . B 2 16.91 56.06 81.734 1 34.54 ? O5 BM3 301 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#