data_6JDK # _model_server_result.job_id hOeIvG5-A-yBlDEj9H2DeQ _model_server_result.datetime_utc '2024-11-14 16:49:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6JDK # _exptl.entry_id 6JDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.25 _cell.angle_gamma 90 _cell.entry_id 6JDK _cell.length_a 90.831 _cell.length_b 55.049 _cell.length_c 118.099 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 447 A CYS 447 1_555 A SG CYS 452 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 447 B CYS 447 1_555 B SG CYS 452 B CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A O GLU 126 A GLU 126 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc2 A OE1 GLU 126 A GLU 126 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 A OE2 GLU 126 A GLU 126 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc4 A OD1 ASP 129 A ASP 129 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 A OE1 GLN 480 A GLN 480 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc6 A OE1 GLU 483 A GLU 483 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc7 D MG MG . A MG 602 1_555 B OE1 GLN 480 B GLN 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 D MG MG . A MG 602 1_555 B OE2 GLU 483 B GLU 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc9 D MG MG . A MG 602 1_555 H O HOH . B HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc10 B O GLU 126 B GLU 126 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc11 B OE2 GLU 126 B GLU 126 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc12 B OD1 ASP 129 B ASP 129 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc13 F MG MG . B MG 602 1_555 H O HOH . B HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JDK _atom_sites.fract_transf_matrix[1][1] 0.011009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001012 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 MG A 1 602 1 MG MG . E 2 FAD B 1 601 601 FAD FAD . F 3 MG B 1 602 2 MG MG . G 4 HOH A 1 701 20 HOH HOH . G 4 HOH A 2 702 151 HOH HOH . G 4 HOH A 3 703 132 HOH HOH . G 4 HOH A 4 704 72 HOH HOH . G 4 HOH A 5 705 157 HOH HOH . G 4 HOH A 6 706 125 HOH HOH . G 4 HOH A 7 707 49 HOH HOH . G 4 HOH A 8 708 80 HOH HOH . G 4 HOH A 9 709 92 HOH HOH . G 4 HOH A 10 710 146 HOH HOH . G 4 HOH A 11 711 98 HOH HOH . G 4 HOH A 12 712 62 HOH HOH . G 4 HOH A 13 713 175 HOH HOH . G 4 HOH A 14 714 2 HOH HOH . G 4 HOH A 15 715 23 HOH HOH . G 4 HOH A 16 716 137 HOH HOH . G 4 HOH A 17 717 166 HOH HOH . G 4 HOH A 18 718 94 HOH HOH . G 4 HOH A 19 719 47 HOH HOH . G 4 HOH A 20 720 50 HOH HOH . G 4 HOH A 21 721 8 HOH HOH . G 4 HOH A 22 722 10 HOH HOH . G 4 HOH A 23 723 15 HOH HOH . G 4 HOH A 24 724 25 HOH HOH . G 4 HOH A 25 725 33 HOH HOH . G 4 HOH A 26 726 74 HOH HOH . G 4 HOH A 27 727 152 HOH HOH . G 4 HOH A 28 728 173 HOH HOH . G 4 HOH A 29 729 3 HOH HOH . G 4 HOH A 30 730 31 HOH HOH . G 4 HOH A 31 731 21 HOH HOH . G 4 HOH A 32 732 61 HOH HOH . G 4 HOH A 33 733 104 HOH HOH . G 4 HOH A 34 734 59 HOH HOH . G 4 HOH A 35 735 38 HOH HOH . G 4 HOH A 36 736 87 HOH HOH . G 4 HOH A 37 737 35 HOH HOH . G 4 HOH A 38 738 29 HOH HOH . G 4 HOH A 39 739 114 HOH HOH . G 4 HOH A 40 740 69 HOH HOH . G 4 HOH A 41 741 66 HOH HOH . G 4 HOH A 42 742 139 HOH HOH . G 4 HOH A 43 743 37 HOH HOH . G 4 HOH A 44 744 55 HOH HOH . G 4 HOH A 45 745 105 HOH HOH . G 4 HOH A 46 746 113 HOH HOH . G 4 HOH A 47 747 1 HOH HOH . G 4 HOH A 48 748 12 HOH HOH . G 4 HOH A 49 749 83 HOH HOH . G 4 HOH A 50 750 7 HOH HOH . G 4 HOH A 51 751 126 HOH HOH . G 4 HOH A 52 752 118 HOH HOH . G 4 HOH A 53 753 41 HOH HOH . G 4 HOH A 54 754 131 HOH HOH . G 4 HOH A 55 755 51 HOH HOH . G 4 HOH A 56 756 101 HOH HOH . G 4 HOH A 57 757 145 HOH HOH . G 4 HOH A 58 758 116 HOH HOH . G 4 HOH A 59 759 30 HOH HOH . G 4 HOH A 60 760 18 HOH HOH . G 4 HOH A 61 761 40 HOH HOH . G 4 HOH A 62 762 79 HOH HOH . G 4 HOH A 63 763 58 HOH HOH . G 4 HOH A 64 764 45 HOH HOH . G 4 HOH A 65 765 46 HOH HOH . G 4 HOH A 66 766 167 HOH HOH . G 4 HOH A 67 767 85 HOH HOH . G 4 HOH A 68 768 63 HOH HOH . G 4 HOH A 69 769 100 HOH HOH . G 4 HOH A 70 770 28 HOH HOH . G 4 HOH A 71 771 197 HOH HOH . G 4 HOH A 72 772 36 HOH HOH . G 4 HOH A 73 773 172 HOH HOH . G 4 HOH A 74 774 27 HOH HOH . G 4 HOH A 75 775 81 HOH HOH . G 4 HOH A 76 776 119 HOH HOH . G 4 HOH A 77 777 108 HOH HOH . G 4 HOH A 78 778 86 HOH HOH . G 4 HOH A 79 779 186 HOH HOH . G 4 HOH A 80 780 89 HOH HOH . G 4 HOH A 81 781 67 HOH HOH . G 4 HOH A 82 782 128 HOH HOH . G 4 HOH A 83 783 124 HOH HOH . G 4 HOH A 84 784 115 HOH HOH . G 4 HOH A 85 785 130 HOH HOH . G 4 HOH A 86 786 93 HOH HOH . G 4 HOH A 87 787 64 HOH HOH . G 4 HOH A 88 788 103 HOH HOH . G 4 HOH A 89 789 60 HOH HOH . G 4 HOH A 90 790 188 HOH HOH . G 4 HOH A 91 791 182 HOH HOH . G 4 HOH A 92 792 153 HOH HOH . G 4 HOH A 93 793 147 HOH HOH . G 4 HOH A 94 794 163 HOH HOH . G 4 HOH A 95 795 155 HOH HOH . G 4 HOH A 96 796 180 HOH HOH . G 4 HOH A 97 797 179 HOH HOH . G 4 HOH A 98 798 185 HOH HOH . G 4 HOH A 99 799 65 HOH HOH . G 4 HOH A 100 800 159 HOH HOH . G 4 HOH A 101 801 183 HOH HOH . G 4 HOH A 102 802 26 HOH HOH . G 4 HOH A 103 803 193 HOH HOH . G 4 HOH A 104 804 156 HOH HOH . G 4 HOH A 105 805 122 HOH HOH . G 4 HOH A 106 806 199 HOH HOH . G 4 HOH A 107 807 171 HOH HOH . G 4 HOH A 108 808 191 HOH HOH . G 4 HOH A 109 809 42 HOH HOH . G 4 HOH A 110 810 141 HOH HOH . G 4 HOH A 111 811 192 HOH HOH . G 4 HOH A 112 812 52 HOH HOH . G 4 HOH A 113 813 96 HOH HOH . G 4 HOH A 114 814 133 HOH HOH . G 4 HOH A 115 815 143 HOH HOH . G 4 HOH A 116 816 176 HOH HOH . H 4 HOH B 1 701 160 HOH HOH . H 4 HOH B 2 702 148 HOH HOH . H 4 HOH B 3 703 107 HOH HOH . H 4 HOH B 4 704 9 HOH HOH . H 4 HOH B 5 705 123 HOH HOH . H 4 HOH B 6 706 77 HOH HOH . H 4 HOH B 7 707 195 HOH HOH . H 4 HOH B 8 708 170 HOH HOH . H 4 HOH B 9 709 56 HOH HOH . H 4 HOH B 10 710 161 HOH HOH . H 4 HOH B 11 711 102 HOH HOH . H 4 HOH B 12 712 39 HOH HOH . H 4 HOH B 13 713 111 HOH HOH . H 4 HOH B 14 714 127 HOH HOH . H 4 HOH B 15 715 117 HOH HOH . H 4 HOH B 16 716 109 HOH HOH . H 4 HOH B 17 717 14 HOH HOH . H 4 HOH B 18 718 134 HOH HOH . H 4 HOH B 19 719 54 HOH HOH . H 4 HOH B 20 720 149 HOH HOH . H 4 HOH B 21 721 99 HOH HOH . H 4 HOH B 22 722 34 HOH HOH . H 4 HOH B 23 723 110 HOH HOH . H 4 HOH B 24 724 19 HOH HOH . H 4 HOH B 25 725 5 HOH HOH . H 4 HOH B 26 726 16 HOH HOH . H 4 HOH B 27 727 140 HOH HOH . H 4 HOH B 28 728 73 HOH HOH . H 4 HOH B 29 729 53 HOH HOH . H 4 HOH B 30 730 13 HOH HOH . H 4 HOH B 31 731 84 HOH HOH . H 4 HOH B 32 732 106 HOH HOH . H 4 HOH B 33 733 120 HOH HOH . H 4 HOH B 34 734 32 HOH HOH . H 4 HOH B 35 735 150 HOH HOH . H 4 HOH B 36 736 48 HOH HOH . H 4 HOH B 37 737 136 HOH HOH . H 4 HOH B 38 738 17 HOH HOH . H 4 HOH B 39 739 154 HOH HOH . H 4 HOH B 40 740 11 HOH HOH . H 4 HOH B 41 741 164 HOH HOH . H 4 HOH B 42 742 91 HOH HOH . H 4 HOH B 43 743 82 HOH HOH . H 4 HOH B 44 744 70 HOH HOH . H 4 HOH B 45 745 190 HOH HOH . H 4 HOH B 46 746 162 HOH HOH . H 4 HOH B 47 747 22 HOH HOH . H 4 HOH B 48 748 135 HOH HOH . H 4 HOH B 49 749 24 HOH HOH . H 4 HOH B 50 750 75 HOH HOH . H 4 HOH B 51 751 90 HOH HOH . H 4 HOH B 52 752 4 HOH HOH . H 4 HOH B 53 753 138 HOH HOH . H 4 HOH B 54 754 184 HOH HOH . H 4 HOH B 55 755 88 HOH HOH . H 4 HOH B 56 756 44 HOH HOH . H 4 HOH B 57 757 189 HOH HOH . H 4 HOH B 58 758 112 HOH HOH . H 4 HOH B 59 759 68 HOH HOH . H 4 HOH B 60 760 43 HOH HOH . H 4 HOH B 61 761 187 HOH HOH . H 4 HOH B 62 762 78 HOH HOH . H 4 HOH B 63 763 129 HOH HOH . H 4 HOH B 64 764 76 HOH HOH . H 4 HOH B 65 765 71 HOH HOH . H 4 HOH B 66 766 178 HOH HOH . H 4 HOH B 67 767 169 HOH HOH . H 4 HOH B 68 768 57 HOH HOH . H 4 HOH B 69 769 6 HOH HOH . H 4 HOH B 70 770 198 HOH HOH . H 4 HOH B 71 771 177 HOH HOH . H 4 HOH B 72 772 97 HOH HOH . H 4 HOH B 73 773 181 HOH HOH . H 4 HOH B 74 774 144 HOH HOH . H 4 HOH B 75 775 196 HOH HOH . H 4 HOH B 76 776 165 HOH HOH . H 4 HOH B 77 777 168 HOH HOH . H 4 HOH B 78 778 174 HOH HOH . H 4 HOH B 79 779 142 HOH HOH . H 4 HOH B 80 780 95 HOH HOH . H 4 HOH B 81 781 158 HOH HOH . H 4 HOH B 82 782 121 HOH HOH . H 4 HOH B 83 783 194 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.873 _atom_site.Cartn_y 89.263 _atom_site.Cartn_z 212.337 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #