data_6JDK
#
_model_server_result.job_id            2_XHGl2bltm8klFID36pCQ 
_model_server_result.datetime_utc      '2024-11-29 14:44:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jdk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    6JDK 
#
_exptl.entry_id    6JDK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.25 
_cell.angle_gamma         90 
_cell.entry_id            6JDK 
_cell.length_a            90.831 
_cell.length_b            55.049 
_cell.length_c            118.099 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JDK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 447 A CYS 447 1_555 A SG CYS 452 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 447 B CYS 447 1_555 B SG CYS 452 B CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 A O GLU 126 A GLU 126 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc2 A OE1 GLU 126 A GLU 126 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc3 A OE2 GLU 126 A GLU 126 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc4 A OD1 ASP 129 A ASP 129 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc5 A OE1 GLN 480 A GLN 480 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc6 A OE1 GLU 483 A GLU 483 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc7 D MG MG . A MG 602 1_555 B OE1 GLN 480 B GLN 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc8 D MG MG . A MG 602 1_555 B OE2 GLU 483 B GLU 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc9 D MG MG . A MG 602 1_555 H O HOH . B HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc10 B O GLU 126 B GLU 126 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc11 B OE2 GLU 126 B GLU 126 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc12 B OD1 ASP 129 B ASP 129 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc13 F MG MG . B MG 602 1_555 H O HOH . B HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6JDK 
_atom_sites.fract_transf_matrix[1][1]    0.011009 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001012 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008503 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 MG A 1 602 1 MG MG . 
E 2 FAD B 1 601 601 FAD FAD . 
F 3 MG B 1 602 2 MG MG . 
G 4 HOH A 1 701 20 HOH HOH . 
G 4 HOH A 2 702 151 HOH HOH . 
G 4 HOH A 3 703 132 HOH HOH . 
G 4 HOH A 4 704 72 HOH HOH . 
G 4 HOH A 5 705 157 HOH HOH . 
G 4 HOH A 6 706 125 HOH HOH . 
G 4 HOH A 7 707 49 HOH HOH . 
G 4 HOH A 8 708 80 HOH HOH . 
G 4 HOH A 9 709 92 HOH HOH . 
G 4 HOH A 10 710 146 HOH HOH . 
G 4 HOH A 11 711 98 HOH HOH . 
G 4 HOH A 12 712 62 HOH HOH . 
G 4 HOH A 13 713 175 HOH HOH . 
G 4 HOH A 14 714 2 HOH HOH . 
G 4 HOH A 15 715 23 HOH HOH . 
G 4 HOH A 16 716 137 HOH HOH . 
G 4 HOH A 17 717 166 HOH HOH . 
G 4 HOH A 18 718 94 HOH HOH . 
G 4 HOH A 19 719 47 HOH HOH . 
G 4 HOH A 20 720 50 HOH HOH . 
G 4 HOH A 21 721 8 HOH HOH . 
G 4 HOH A 22 722 10 HOH HOH . 
G 4 HOH A 23 723 15 HOH HOH . 
G 4 HOH A 24 724 25 HOH HOH . 
G 4 HOH A 25 725 33 HOH HOH . 
G 4 HOH A 26 726 74 HOH HOH . 
G 4 HOH A 27 727 152 HOH HOH . 
G 4 HOH A 28 728 173 HOH HOH . 
G 4 HOH A 29 729 3 HOH HOH . 
G 4 HOH A 30 730 31 HOH HOH . 
G 4 HOH A 31 731 21 HOH HOH . 
G 4 HOH A 32 732 61 HOH HOH . 
G 4 HOH A 33 733 104 HOH HOH . 
G 4 HOH A 34 734 59 HOH HOH . 
G 4 HOH A 35 735 38 HOH HOH . 
G 4 HOH A 36 736 87 HOH HOH . 
G 4 HOH A 37 737 35 HOH HOH . 
G 4 HOH A 38 738 29 HOH HOH . 
G 4 HOH A 39 739 114 HOH HOH . 
G 4 HOH A 40 740 69 HOH HOH . 
G 4 HOH A 41 741 66 HOH HOH . 
G 4 HOH A 42 742 139 HOH HOH . 
G 4 HOH A 43 743 37 HOH HOH . 
G 4 HOH A 44 744 55 HOH HOH . 
G 4 HOH A 45 745 105 HOH HOH . 
G 4 HOH A 46 746 113 HOH HOH . 
G 4 HOH A 47 747 1 HOH HOH . 
G 4 HOH A 48 748 12 HOH HOH . 
G 4 HOH A 49 749 83 HOH HOH . 
G 4 HOH A 50 750 7 HOH HOH . 
G 4 HOH A 51 751 126 HOH HOH . 
G 4 HOH A 52 752 118 HOH HOH . 
G 4 HOH A 53 753 41 HOH HOH . 
G 4 HOH A 54 754 131 HOH HOH . 
G 4 HOH A 55 755 51 HOH HOH . 
G 4 HOH A 56 756 101 HOH HOH . 
G 4 HOH A 57 757 145 HOH HOH . 
G 4 HOH A 58 758 116 HOH HOH . 
G 4 HOH A 59 759 30 HOH HOH . 
G 4 HOH A 60 760 18 HOH HOH . 
G 4 HOH A 61 761 40 HOH HOH . 
G 4 HOH A 62 762 79 HOH HOH . 
G 4 HOH A 63 763 58 HOH HOH . 
G 4 HOH A 64 764 45 HOH HOH . 
G 4 HOH A 65 765 46 HOH HOH . 
G 4 HOH A 66 766 167 HOH HOH . 
G 4 HOH A 67 767 85 HOH HOH . 
G 4 HOH A 68 768 63 HOH HOH . 
G 4 HOH A 69 769 100 HOH HOH . 
G 4 HOH A 70 770 28 HOH HOH . 
G 4 HOH A 71 771 197 HOH HOH . 
G 4 HOH A 72 772 36 HOH HOH . 
G 4 HOH A 73 773 172 HOH HOH . 
G 4 HOH A 74 774 27 HOH HOH . 
G 4 HOH A 75 775 81 HOH HOH . 
G 4 HOH A 76 776 119 HOH HOH . 
G 4 HOH A 77 777 108 HOH HOH . 
G 4 HOH A 78 778 86 HOH HOH . 
G 4 HOH A 79 779 186 HOH HOH . 
G 4 HOH A 80 780 89 HOH HOH . 
G 4 HOH A 81 781 67 HOH HOH . 
G 4 HOH A 82 782 128 HOH HOH . 
G 4 HOH A 83 783 124 HOH HOH . 
G 4 HOH A 84 784 115 HOH HOH . 
G 4 HOH A 85 785 130 HOH HOH . 
G 4 HOH A 86 786 93 HOH HOH . 
G 4 HOH A 87 787 64 HOH HOH . 
G 4 HOH A 88 788 103 HOH HOH . 
G 4 HOH A 89 789 60 HOH HOH . 
G 4 HOH A 90 790 188 HOH HOH . 
G 4 HOH A 91 791 182 HOH HOH . 
G 4 HOH A 92 792 153 HOH HOH . 
G 4 HOH A 93 793 147 HOH HOH . 
G 4 HOH A 94 794 163 HOH HOH . 
G 4 HOH A 95 795 155 HOH HOH . 
G 4 HOH A 96 796 180 HOH HOH . 
G 4 HOH A 97 797 179 HOH HOH . 
G 4 HOH A 98 798 185 HOH HOH . 
G 4 HOH A 99 799 65 HOH HOH . 
G 4 HOH A 100 800 159 HOH HOH . 
G 4 HOH A 101 801 183 HOH HOH . 
G 4 HOH A 102 802 26 HOH HOH . 
G 4 HOH A 103 803 193 HOH HOH . 
G 4 HOH A 104 804 156 HOH HOH . 
G 4 HOH A 105 805 122 HOH HOH . 
G 4 HOH A 106 806 199 HOH HOH . 
G 4 HOH A 107 807 171 HOH HOH . 
G 4 HOH A 108 808 191 HOH HOH . 
G 4 HOH A 109 809 42 HOH HOH . 
G 4 HOH A 110 810 141 HOH HOH . 
G 4 HOH A 111 811 192 HOH HOH . 
G 4 HOH A 112 812 52 HOH HOH . 
G 4 HOH A 113 813 96 HOH HOH . 
G 4 HOH A 114 814 133 HOH HOH . 
G 4 HOH A 115 815 143 HOH HOH . 
G 4 HOH A 116 816 176 HOH HOH . 
H 4 HOH B 1 701 160 HOH HOH . 
H 4 HOH B 2 702 148 HOH HOH . 
H 4 HOH B 3 703 107 HOH HOH . 
H 4 HOH B 4 704 9 HOH HOH . 
H 4 HOH B 5 705 123 HOH HOH . 
H 4 HOH B 6 706 77 HOH HOH . 
H 4 HOH B 7 707 195 HOH HOH . 
H 4 HOH B 8 708 170 HOH HOH . 
H 4 HOH B 9 709 56 HOH HOH . 
H 4 HOH B 10 710 161 HOH HOH . 
H 4 HOH B 11 711 102 HOH HOH . 
H 4 HOH B 12 712 39 HOH HOH . 
H 4 HOH B 13 713 111 HOH HOH . 
H 4 HOH B 14 714 127 HOH HOH . 
H 4 HOH B 15 715 117 HOH HOH . 
H 4 HOH B 16 716 109 HOH HOH . 
H 4 HOH B 17 717 14 HOH HOH . 
H 4 HOH B 18 718 134 HOH HOH . 
H 4 HOH B 19 719 54 HOH HOH . 
H 4 HOH B 20 720 149 HOH HOH . 
H 4 HOH B 21 721 99 HOH HOH . 
H 4 HOH B 22 722 34 HOH HOH . 
H 4 HOH B 23 723 110 HOH HOH . 
H 4 HOH B 24 724 19 HOH HOH . 
H 4 HOH B 25 725 5 HOH HOH . 
H 4 HOH B 26 726 16 HOH HOH . 
H 4 HOH B 27 727 140 HOH HOH . 
H 4 HOH B 28 728 73 HOH HOH . 
H 4 HOH B 29 729 53 HOH HOH . 
H 4 HOH B 30 730 13 HOH HOH . 
H 4 HOH B 31 731 84 HOH HOH . 
H 4 HOH B 32 732 106 HOH HOH . 
H 4 HOH B 33 733 120 HOH HOH . 
H 4 HOH B 34 734 32 HOH HOH . 
H 4 HOH B 35 735 150 HOH HOH . 
H 4 HOH B 36 736 48 HOH HOH . 
H 4 HOH B 37 737 136 HOH HOH . 
H 4 HOH B 38 738 17 HOH HOH . 
H 4 HOH B 39 739 154 HOH HOH . 
H 4 HOH B 40 740 11 HOH HOH . 
H 4 HOH B 41 741 164 HOH HOH . 
H 4 HOH B 42 742 91 HOH HOH . 
H 4 HOH B 43 743 82 HOH HOH . 
H 4 HOH B 44 744 70 HOH HOH . 
H 4 HOH B 45 745 190 HOH HOH . 
H 4 HOH B 46 746 162 HOH HOH . 
H 4 HOH B 47 747 22 HOH HOH . 
H 4 HOH B 48 748 135 HOH HOH . 
H 4 HOH B 49 749 24 HOH HOH . 
H 4 HOH B 50 750 75 HOH HOH . 
H 4 HOH B 51 751 90 HOH HOH . 
H 4 HOH B 52 752 4 HOH HOH . 
H 4 HOH B 53 753 138 HOH HOH . 
H 4 HOH B 54 754 184 HOH HOH . 
H 4 HOH B 55 755 88 HOH HOH . 
H 4 HOH B 56 756 44 HOH HOH . 
H 4 HOH B 57 757 189 HOH HOH . 
H 4 HOH B 58 758 112 HOH HOH . 
H 4 HOH B 59 759 68 HOH HOH . 
H 4 HOH B 60 760 43 HOH HOH . 
H 4 HOH B 61 761 187 HOH HOH . 
H 4 HOH B 62 762 78 HOH HOH . 
H 4 HOH B 63 763 129 HOH HOH . 
H 4 HOH B 64 764 76 HOH HOH . 
H 4 HOH B 65 765 71 HOH HOH . 
H 4 HOH B 66 766 178 HOH HOH . 
H 4 HOH B 67 767 169 HOH HOH . 
H 4 HOH B 68 768 57 HOH HOH . 
H 4 HOH B 69 769 6 HOH HOH . 
H 4 HOH B 70 770 198 HOH HOH . 
H 4 HOH B 71 771 177 HOH HOH . 
H 4 HOH B 72 772 97 HOH HOH . 
H 4 HOH B 73 773 181 HOH HOH . 
H 4 HOH B 74 774 144 HOH HOH . 
H 4 HOH B 75 775 196 HOH HOH . 
H 4 HOH B 76 776 165 HOH HOH . 
H 4 HOH B 77 777 168 HOH HOH . 
H 4 HOH B 78 778 174 HOH HOH . 
H 4 HOH B 79 779 142 HOH HOH . 
H 4 HOH B 80 780 95 HOH HOH . 
H 4 HOH B 81 781 158 HOH HOH . 
H 4 HOH B 82 782 121 HOH HOH . 
H 4 HOH B 83 783 194 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               10.873 
_atom_site.Cartn_y               89.263 
_atom_site.Cartn_z               212.337 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#