data_6JDU # _model_server_result.job_id gL1l0N4tg_MXolBqs9cj-g _model_server_result.datetime_utc '2025-02-20 10:51:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6JDU # _exptl.entry_id 6JDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JDU _cell.length_a 92.914 _cell.length_b 92.914 _cell.length_c 147.696 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 7 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A SG CYS 10 A CYS 10 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A SG CYS 20 A CYS 20 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 A SG CYS 25 A CYS 25 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 A ND1 HIS 28 A HIS 28 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc6 A NE2 HIS 32 A HIS 32 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc7 A ND1 HIS 34 A HIS 34 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc8 A SG CYS 35 A CYS 35 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc9 A SG CYS 41 A CYS 41 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc10 A ND1 HIS 43 A HIS 43 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc11 A SG CYS 50 A CYS 50 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc12 A SG CYS 53 A CYS 53 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc13 A OE2 GLU 66 A GLU 66 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc14 A OE1 GLU 69 A GLU 69 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc15 A OE2 GLU 69 A GLU 69 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc16 A O ALA 228 A ALA 228 1_555 E CA CA . A CA 504 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc17 A O SER 260 A SER 260 1_555 E CA CA . A CA 504 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc18 G CA CA . A CA 506 1_555 H O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc19 G CA CA . A CA 506 1_555 H O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JDU _atom_sites.fract_transf_matrix[1][1] 0.010763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 2 ZN A 1 502 2 ZN ZN . D 2 ZN A 1 503 3 ZN ZN . E 3 CA A 1 504 1 CA CA . F 3 CA A 1 505 2 CA CA . G 3 CA A 1 506 3 CA CA . H 4 HOH A 1 601 113 HOH HOH . H 4 HOH A 2 602 161 HOH HOH . H 4 HOH A 3 603 79 HOH HOH . H 4 HOH A 4 604 74 HOH HOH . H 4 HOH A 5 605 152 HOH HOH . H 4 HOH A 6 606 114 HOH HOH . H 4 HOH A 7 607 81 HOH HOH . H 4 HOH A 8 608 101 HOH HOH . H 4 HOH A 9 609 112 HOH HOH . H 4 HOH A 10 610 106 HOH HOH . H 4 HOH A 11 611 57 HOH HOH . H 4 HOH A 12 612 89 HOH HOH . H 4 HOH A 13 613 160 HOH HOH . H 4 HOH A 14 614 107 HOH HOH . H 4 HOH A 15 615 7 HOH HOH . H 4 HOH A 16 616 84 HOH HOH . H 4 HOH A 17 617 80 HOH HOH . H 4 HOH A 18 618 20 HOH HOH . H 4 HOH A 19 619 37 HOH HOH . H 4 HOH A 20 620 124 HOH HOH . H 4 HOH A 21 621 142 HOH HOH . H 4 HOH A 22 622 119 HOH HOH . H 4 HOH A 23 623 32 HOH HOH . H 4 HOH A 24 624 115 HOH HOH . H 4 HOH A 25 625 83 HOH HOH . H 4 HOH A 26 626 39 HOH HOH . H 4 HOH A 27 627 116 HOH HOH . H 4 HOH A 28 628 49 HOH HOH . H 4 HOH A 29 629 6 HOH HOH . H 4 HOH A 30 630 108 HOH HOH . H 4 HOH A 31 631 123 HOH HOH . H 4 HOH A 32 632 30 HOH HOH . H 4 HOH A 33 633 82 HOH HOH . H 4 HOH A 34 634 75 HOH HOH . H 4 HOH A 35 635 67 HOH HOH . H 4 HOH A 36 636 56 HOH HOH . H 4 HOH A 37 637 68 HOH HOH . H 4 HOH A 38 638 103 HOH HOH . H 4 HOH A 39 639 28 HOH HOH . H 4 HOH A 40 640 140 HOH HOH . H 4 HOH A 41 641 35 HOH HOH . H 4 HOH A 42 642 94 HOH HOH . H 4 HOH A 43 643 132 HOH HOH . H 4 HOH A 44 644 154 HOH HOH . H 4 HOH A 45 645 14 HOH HOH . H 4 HOH A 46 646 95 HOH HOH . H 4 HOH A 47 647 71 HOH HOH . H 4 HOH A 48 648 125 HOH HOH . H 4 HOH A 49 649 162 HOH HOH . H 4 HOH A 50 650 104 HOH HOH . H 4 HOH A 51 651 126 HOH HOH . H 4 HOH A 52 652 164 HOH HOH . H 4 HOH A 53 653 59 HOH HOH . H 4 HOH A 54 654 41 HOH HOH . H 4 HOH A 55 655 34 HOH HOH . H 4 HOH A 56 656 22 HOH HOH . H 4 HOH A 57 657 90 HOH HOH . H 4 HOH A 58 658 38 HOH HOH . H 4 HOH A 59 659 153 HOH HOH . H 4 HOH A 60 660 136 HOH HOH . H 4 HOH A 61 661 139 HOH HOH . H 4 HOH A 62 662 127 HOH HOH . H 4 HOH A 63 663 63 HOH HOH . H 4 HOH A 64 664 46 HOH HOH . H 4 HOH A 65 665 61 HOH HOH . H 4 HOH A 66 666 76 HOH HOH . H 4 HOH A 67 667 78 HOH HOH . H 4 HOH A 68 668 44 HOH HOH . H 4 HOH A 69 669 155 HOH HOH . H 4 HOH A 70 670 9 HOH HOH . H 4 HOH A 71 671 109 HOH HOH . H 4 HOH A 72 672 88 HOH HOH . H 4 HOH A 73 673 166 HOH HOH . H 4 HOH A 74 674 18 HOH HOH . H 4 HOH A 75 675 99 HOH HOH . H 4 HOH A 76 676 1 HOH HOH . H 4 HOH A 77 677 12 HOH HOH . H 4 HOH A 78 678 143 HOH HOH . H 4 HOH A 79 679 40 HOH HOH . H 4 HOH A 80 680 120 HOH HOH . H 4 HOH A 81 681 70 HOH HOH . H 4 HOH A 82 682 62 HOH HOH . H 4 HOH A 83 683 48 HOH HOH . H 4 HOH A 84 684 17 HOH HOH . H 4 HOH A 85 685 131 HOH HOH . H 4 HOH A 86 686 10 HOH HOH . H 4 HOH A 87 687 151 HOH HOH . H 4 HOH A 88 688 5 HOH HOH . H 4 HOH A 89 689 159 HOH HOH . H 4 HOH A 90 690 130 HOH HOH . H 4 HOH A 91 691 60 HOH HOH . H 4 HOH A 92 692 27 HOH HOH . H 4 HOH A 93 693 73 HOH HOH . H 4 HOH A 94 694 26 HOH HOH . H 4 HOH A 95 695 65 HOH HOH . H 4 HOH A 96 696 137 HOH HOH . H 4 HOH A 97 697 66 HOH HOH . H 4 HOH A 98 698 150 HOH HOH . H 4 HOH A 99 699 85 HOH HOH . H 4 HOH A 100 700 147 HOH HOH . H 4 HOH A 101 701 51 HOH HOH . H 4 HOH A 102 702 58 HOH HOH . H 4 HOH A 103 703 2 HOH HOH . H 4 HOH A 104 704 53 HOH HOH . H 4 HOH A 105 705 93 HOH HOH . H 4 HOH A 106 706 8 HOH HOH . H 4 HOH A 107 707 158 HOH HOH . H 4 HOH A 108 708 23 HOH HOH . H 4 HOH A 109 709 128 HOH HOH . H 4 HOH A 110 710 133 HOH HOH . H 4 HOH A 111 711 102 HOH HOH . H 4 HOH A 112 712 91 HOH HOH . H 4 HOH A 113 713 134 HOH HOH . H 4 HOH A 114 714 52 HOH HOH . H 4 HOH A 115 715 11 HOH HOH . H 4 HOH A 116 716 165 HOH HOH . H 4 HOH A 117 717 43 HOH HOH . H 4 HOH A 118 718 141 HOH HOH . H 4 HOH A 119 719 15 HOH HOH . H 4 HOH A 120 720 54 HOH HOH . H 4 HOH A 121 721 50 HOH HOH . H 4 HOH A 122 722 25 HOH HOH . H 4 HOH A 123 723 156 HOH HOH . H 4 HOH A 124 724 24 HOH HOH . H 4 HOH A 125 725 135 HOH HOH . H 4 HOH A 126 726 29 HOH HOH . H 4 HOH A 127 727 167 HOH HOH . H 4 HOH A 128 728 55 HOH HOH . H 4 HOH A 129 729 4 HOH HOH . H 4 HOH A 130 730 19 HOH HOH . H 4 HOH A 131 731 121 HOH HOH . H 4 HOH A 132 732 96 HOH HOH . H 4 HOH A 133 733 111 HOH HOH . H 4 HOH A 134 734 16 HOH HOH . H 4 HOH A 135 735 21 HOH HOH . H 4 HOH A 136 736 92 HOH HOH . H 4 HOH A 137 737 36 HOH HOH . H 4 HOH A 138 738 157 HOH HOH . H 4 HOH A 139 739 64 HOH HOH . H 4 HOH A 140 740 138 HOH HOH . H 4 HOH A 141 741 118 HOH HOH . H 4 HOH A 142 742 100 HOH HOH . H 4 HOH A 143 743 146 HOH HOH . H 4 HOH A 144 744 117 HOH HOH . H 4 HOH A 145 745 69 HOH HOH . H 4 HOH A 146 746 72 HOH HOH . H 4 HOH A 147 747 97 HOH HOH . H 4 HOH A 148 748 13 HOH HOH . H 4 HOH A 149 749 31 HOH HOH . H 4 HOH A 150 750 3 HOH HOH . H 4 HOH A 151 751 33 HOH HOH . H 4 HOH A 152 752 144 HOH HOH . H 4 HOH A 153 753 77 HOH HOH . H 4 HOH A 154 754 149 HOH HOH . H 4 HOH A 155 755 45 HOH HOH . H 4 HOH A 156 756 110 HOH HOH . H 4 HOH A 157 757 168 HOH HOH . H 4 HOH A 158 758 86 HOH HOH . H 4 HOH A 159 759 122 HOH HOH . H 4 HOH A 160 760 145 HOH HOH . H 4 HOH A 161 761 42 HOH HOH . H 4 HOH A 162 762 148 HOH HOH . H 4 HOH A 163 763 105 HOH HOH . H 4 HOH A 164 764 87 HOH HOH . H 4 HOH A 165 765 163 HOH HOH . H 4 HOH A 166 766 47 HOH HOH . H 4 HOH A 167 767 129 HOH HOH . H 4 HOH A 168 768 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 31.102 _atom_site.Cartn_y 24.04 _atom_site.Cartn_z 22.457 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #