data_6JED
#
_model_server_result.job_id            xaQryY_NbLN9GeneZM61vg 
_model_server_result.datetime_utc      '2024-11-07 17:53:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jed 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6JED 
#
_exptl.entry_id    6JED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.117 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFANYLACETIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JED 
_cell.length_a            35.92 
_cell.length_b            56.82 
_cell.length_c            101.06 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 77 A HIS 77 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc2 A ND1 HIS 79 A HIS 79 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc3 A OD2 ASP 81 A ASP 81 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc4 A NE2 HIS 139 A HIS 139 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc5 A SG CYS 158 A CYS 158 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc6 A NE2 HIS 197 A HIS 197 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc7 B ZN ZN . A ZN 301 1_555 D S2 MCR . A MCR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D O MCR . A MCR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc9 C ZN ZN . A ZN 302 1_555 D S2 MCR . A MCR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
#
_chem_comp.formula           'C2 H4 O2 S' 
_chem_comp.formula_weight    92.117 
_chem_comp.id                MCR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFANYLACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'MERCAPTOACETIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OXT C MCR sing 251 n n 
OXT HXT MCR sing 252 n n 
C O MCR doub 253 n n 
C CA MCR sing 254 n n 
CA S2 MCR sing 255 n n 
CA HA MCR sing 256 n n 
CA H22 MCR sing 257 n n 
S2 HS2 MCR sing 258 n n 
#
_atom_sites.entry_id                     6JED 
_atom_sites.fract_transf_matrix[1][1]    0.02784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017599 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 2 ZN A 1 302 302 ZN ZN . 
D 3 MCR A 1 303 401 MCR MCR . 
E 4 EPE A 1 304 501 EPE EPE . 
F 5 HOH A 1 401 794 HOH HOH . 
F 5 HOH A 2 402 800 HOH HOH . 
F 5 HOH A 3 403 780 HOH HOH . 
F 5 HOH A 4 404 708 HOH HOH . 
F 5 HOH A 5 405 792 HOH HOH . 
F 5 HOH A 6 406 777 HOH HOH . 
F 5 HOH A 7 407 764 HOH HOH . 
F 5 HOH A 8 408 685 HOH HOH . 
F 5 HOH A 9 409 722 HOH HOH . 
F 5 HOH A 10 410 717 HOH HOH . 
F 5 HOH A 11 411 666 HOH HOH . 
F 5 HOH A 12 412 718 HOH HOH . 
F 5 HOH A 13 413 719 HOH HOH . 
F 5 HOH A 14 414 683 HOH HOH . 
F 5 HOH A 15 415 782 HOH HOH . 
F 5 HOH A 16 416 783 HOH HOH . 
F 5 HOH A 17 417 812 HOH HOH . 
F 5 HOH A 18 418 721 HOH HOH . 
F 5 HOH A 19 419 730 HOH HOH . 
F 5 HOH A 20 420 634 HOH HOH . 
F 5 HOH A 21 421 801 HOH HOH . 
F 5 HOH A 22 422 606 HOH HOH . 
F 5 HOH A 23 423 715 HOH HOH . 
F 5 HOH A 24 424 758 HOH HOH . 
F 5 HOH A 25 425 739 HOH HOH . 
F 5 HOH A 26 426 727 HOH HOH . 
F 5 HOH A 27 427 738 HOH HOH . 
F 5 HOH A 28 428 808 HOH HOH . 
F 5 HOH A 29 429 660 HOH HOH . 
F 5 HOH A 30 430 773 HOH HOH . 
F 5 HOH A 31 431 640 HOH HOH . 
F 5 HOH A 32 432 690 HOH HOH . 
F 5 HOH A 33 433 680 HOH HOH . 
F 5 HOH A 34 434 643 HOH HOH . 
F 5 HOH A 35 435 744 HOH HOH . 
F 5 HOH A 36 436 728 HOH HOH . 
F 5 HOH A 37 437 811 HOH HOH . 
F 5 HOH A 38 438 757 HOH HOH . 
F 5 HOH A 39 439 658 HOH HOH . 
F 5 HOH A 40 440 714 HOH HOH . 
F 5 HOH A 41 441 662 HOH HOH . 
F 5 HOH A 42 442 625 HOH HOH . 
F 5 HOH A 43 443 697 HOH HOH . 
F 5 HOH A 44 444 654 HOH HOH . 
F 5 HOH A 45 445 664 HOH HOH . 
F 5 HOH A 46 446 637 HOH HOH . 
F 5 HOH A 47 447 765 HOH HOH . 
F 5 HOH A 48 448 648 HOH HOH . 
F 5 HOH A 49 449 695 HOH HOH . 
F 5 HOH A 50 450 701 HOH HOH . 
F 5 HOH A 51 451 735 HOH HOH . 
F 5 HOH A 52 452 605 HOH HOH . 
F 5 HOH A 53 453 816 HOH HOH . 
F 5 HOH A 54 454 603 HOH HOH . 
F 5 HOH A 55 455 652 HOH HOH . 
F 5 HOH A 56 456 731 HOH HOH . 
F 5 HOH A 57 457 799 HOH HOH . 
F 5 HOH A 58 458 702 HOH HOH . 
F 5 HOH A 59 459 611 HOH HOH . 
F 5 HOH A 60 460 663 HOH HOH . 
F 5 HOH A 61 461 746 HOH HOH . 
F 5 HOH A 62 462 778 HOH HOH . 
F 5 HOH A 63 463 707 HOH HOH . 
F 5 HOH A 64 464 649 HOH HOH . 
F 5 HOH A 65 465 657 HOH HOH . 
F 5 HOH A 66 466 745 HOH HOH . 
F 5 HOH A 67 467 819 HOH HOH . 
F 5 HOH A 68 468 684 HOH HOH . 
F 5 HOH A 69 469 712 HOH HOH . 
F 5 HOH A 70 470 615 HOH HOH . 
F 5 HOH A 71 471 604 HOH HOH . 
F 5 HOH A 72 472 772 HOH HOH . 
F 5 HOH A 73 473 633 HOH HOH . 
F 5 HOH A 74 474 687 HOH HOH . 
F 5 HOH A 75 475 618 HOH HOH . 
F 5 HOH A 76 476 629 HOH HOH . 
F 5 HOH A 77 477 725 HOH HOH . 
F 5 HOH A 78 478 627 HOH HOH . 
F 5 HOH A 79 479 616 HOH HOH . 
F 5 HOH A 80 480 740 HOH HOH . 
F 5 HOH A 81 481 624 HOH HOH . 
F 5 HOH A 82 482 609 HOH HOH . 
F 5 HOH A 83 483 779 HOH HOH . 
F 5 HOH A 84 484 608 HOH HOH . 
F 5 HOH A 85 485 635 HOH HOH . 
F 5 HOH A 86 486 682 HOH HOH . 
F 5 HOH A 87 487 786 HOH HOH . 
F 5 HOH A 88 488 726 HOH HOH . 
F 5 HOH A 89 489 607 HOH HOH . 
F 5 HOH A 90 490 732 HOH HOH . 
F 5 HOH A 91 491 813 HOH HOH . 
F 5 HOH A 92 492 693 HOH HOH . 
F 5 HOH A 93 493 645 HOH HOH . 
F 5 HOH A 94 494 630 HOH HOH . 
F 5 HOH A 95 495 768 HOH HOH . 
F 5 HOH A 96 496 752 HOH HOH . 
F 5 HOH A 97 497 613 HOH HOH . 
F 5 HOH A 98 498 818 HOH HOH . 
F 5 HOH A 99 499 626 HOH HOH . 
F 5 HOH A 100 500 665 HOH HOH . 
F 5 HOH A 101 501 656 HOH HOH . 
F 5 HOH A 102 502 788 HOH HOH . 
F 5 HOH A 103 503 678 HOH HOH . 
F 5 HOH A 104 504 802 HOH HOH . 
F 5 HOH A 105 505 601 HOH HOH . 
F 5 HOH A 106 506 749 HOH HOH . 
F 5 HOH A 107 507 621 HOH HOH . 
F 5 HOH A 108 508 639 HOH HOH . 
F 5 HOH A 109 509 706 HOH HOH . 
F 5 HOH A 110 510 791 HOH HOH . 
F 5 HOH A 111 511 723 HOH HOH . 
F 5 HOH A 112 512 770 HOH HOH . 
F 5 HOH A 113 513 805 HOH HOH . 
F 5 HOH A 114 514 641 HOH HOH . 
F 5 HOH A 115 515 787 HOH HOH . 
F 5 HOH A 116 516 620 HOH HOH . 
F 5 HOH A 117 517 760 HOH HOH . 
F 5 HOH A 118 518 720 HOH HOH . 
F 5 HOH A 119 519 686 HOH HOH . 
F 5 HOH A 120 520 602 HOH HOH . 
F 5 HOH A 121 521 619 HOH HOH . 
F 5 HOH A 122 522 622 HOH HOH . 
F 5 HOH A 123 523 743 HOH HOH . 
F 5 HOH A 124 524 759 HOH HOH . 
F 5 HOH A 125 525 632 HOH HOH . 
F 5 HOH A 126 526 650 HOH HOH . 
F 5 HOH A 127 527 612 HOH HOH . 
F 5 HOH A 128 528 817 HOH HOH . 
F 5 HOH A 129 529 659 HOH HOH . 
F 5 HOH A 130 530 713 HOH HOH . 
F 5 HOH A 131 531 774 HOH HOH . 
F 5 HOH A 132 532 775 HOH HOH . 
F 5 HOH A 133 533 679 HOH HOH . 
F 5 HOH A 134 534 688 HOH HOH . 
F 5 HOH A 135 535 623 HOH HOH . 
F 5 HOH A 136 536 807 HOH HOH . 
F 5 HOH A 137 537 614 HOH HOH . 
F 5 HOH A 138 538 617 HOH HOH . 
F 5 HOH A 139 539 734 HOH HOH . 
F 5 HOH A 140 540 628 HOH HOH . 
F 5 HOH A 141 541 771 HOH HOH . 
F 5 HOH A 142 542 653 HOH HOH . 
F 5 HOH A 143 543 789 HOH HOH . 
F 5 HOH A 144 544 750 HOH HOH . 
F 5 HOH A 145 545 751 HOH HOH . 
F 5 HOH A 146 546 742 HOH HOH . 
F 5 HOH A 147 547 655 HOH HOH . 
F 5 HOH A 148 548 636 HOH HOH . 
F 5 HOH A 149 549 793 HOH HOH . 
F 5 HOH A 150 550 820 HOH HOH . 
F 5 HOH A 151 551 761 HOH HOH . 
F 5 HOH A 152 552 651 HOH HOH . 
F 5 HOH A 153 553 661 HOH HOH . 
F 5 HOH A 154 554 699 HOH HOH . 
F 5 HOH A 155 555 785 HOH HOH . 
F 5 HOH A 156 556 644 HOH HOH . 
F 5 HOH A 157 557 724 HOH HOH . 
F 5 HOH A 158 558 698 HOH HOH . 
F 5 HOH A 159 559 691 HOH HOH . 
F 5 HOH A 160 560 822 HOH HOH . 
F 5 HOH A 161 561 638 HOH HOH . 
F 5 HOH A 162 562 821 HOH HOH . 
F 5 HOH A 163 563 815 HOH HOH . 
F 5 HOH A 164 564 795 HOH HOH . 
F 5 HOH A 165 565 798 HOH HOH . 
F 5 HOH A 166 566 755 HOH HOH . 
F 5 HOH A 167 567 704 HOH HOH . 
F 5 HOH A 168 568 814 HOH HOH . 
F 5 HOH A 169 569 696 HOH HOH . 
F 5 HOH A 170 570 767 HOH HOH . 
F 5 HOH A 171 571 784 HOH HOH . 
F 5 HOH A 172 572 703 HOH HOH . 
F 5 HOH A 173 573 747 HOH HOH . 
F 5 HOH A 174 574 692 HOH HOH . 
F 5 HOH A 175 575 809 HOH HOH . 
F 5 HOH A 176 576 694 HOH HOH . 
F 5 HOH A 177 577 710 HOH HOH . 
F 5 HOH A 178 578 737 HOH HOH . 
F 5 HOH A 179 579 689 HOH HOH . 
F 5 HOH A 180 580 700 HOH HOH . 
F 5 HOH A 181 581 762 HOH HOH . 
F 5 HOH A 182 582 741 HOH HOH . 
F 5 HOH A 183 583 766 HOH HOH . 
F 5 HOH A 184 584 681 HOH HOH . 
F 5 HOH A 185 585 790 HOH HOH . 
F 5 HOH A 186 586 729 HOH HOH . 
F 5 HOH A 187 587 646 HOH HOH . 
F 5 HOH A 188 588 711 HOH HOH . 
F 5 HOH A 189 589 736 HOH HOH . 
F 5 HOH A 190 590 763 HOH HOH . 
F 5 HOH A 191 591 748 HOH HOH . 
F 5 HOH A 192 592 796 HOH HOH . 
F 5 HOH A 193 593 667 HOH HOH . 
F 5 HOH A 194 594 705 HOH HOH . 
F 5 HOH A 195 595 709 HOH HOH . 
F 5 HOH A 196 596 647 HOH HOH . 
F 5 HOH A 197 597 716 HOH HOH . 
F 5 HOH A 198 598 769 HOH HOH . 
F 5 HOH A 199 599 756 HOH HOH . 
F 5 HOH A 200 600 753 HOH HOH . 
F 5 HOH A 201 601 754 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OXT MCR . . . D 3 18.203 -4.271 24.831 1 18.24 ? OXT MCR 303 A 1 
HETATM 2 C C MCR . . . D 3 18.211 -3.838 23.625 1 19.03 ? C MCR 303 A 1 
HETATM 3 O O MCR . . . D 3 17.167 -3.761 22.992 1 17.48 ? O MCR 303 A 1 
HETATM 4 C CA MCR . . . D 3 19.503 -3.395 22.945 1 18.98 ? CA MCR 303 A 1 
HETATM 5 S S2 MCR . . . D 3 19.318 -2.4 21.421 1 17.15 ? S2 MCR 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#