data_6JED # _model_server_result.job_id hQf1HWjmlr5g_RUuVYCDIQ _model_server_result.datetime_utc '2024-11-07 17:36:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jed # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6JED # _exptl.entry_id 6JED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JED _cell.length_a 35.92 _cell.length_b 56.82 _cell.length_c 101.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JED _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 77 A HIS 77 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 A ND1 HIS 79 A HIS 79 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 A OD2 ASP 81 A ASP 81 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 A NE2 HIS 139 A HIS 139 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 A SG CYS 158 A CYS 158 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 A NE2 HIS 197 A HIS 197 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 D S2 MCR . A MCR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D O MCR . A MCR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 D S2 MCR . A MCR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 6JED _atom_sites.fract_transf_matrix[1][1] 0.02784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 MCR A 1 303 401 MCR MCR . E 4 EPE A 1 304 501 EPE EPE . F 5 HOH A 1 401 794 HOH HOH . F 5 HOH A 2 402 800 HOH HOH . F 5 HOH A 3 403 780 HOH HOH . F 5 HOH A 4 404 708 HOH HOH . F 5 HOH A 5 405 792 HOH HOH . F 5 HOH A 6 406 777 HOH HOH . F 5 HOH A 7 407 764 HOH HOH . F 5 HOH A 8 408 685 HOH HOH . F 5 HOH A 9 409 722 HOH HOH . F 5 HOH A 10 410 717 HOH HOH . F 5 HOH A 11 411 666 HOH HOH . F 5 HOH A 12 412 718 HOH HOH . F 5 HOH A 13 413 719 HOH HOH . F 5 HOH A 14 414 683 HOH HOH . F 5 HOH A 15 415 782 HOH HOH . F 5 HOH A 16 416 783 HOH HOH . F 5 HOH A 17 417 812 HOH HOH . F 5 HOH A 18 418 721 HOH HOH . F 5 HOH A 19 419 730 HOH HOH . F 5 HOH A 20 420 634 HOH HOH . F 5 HOH A 21 421 801 HOH HOH . F 5 HOH A 22 422 606 HOH HOH . F 5 HOH A 23 423 715 HOH HOH . F 5 HOH A 24 424 758 HOH HOH . F 5 HOH A 25 425 739 HOH HOH . F 5 HOH A 26 426 727 HOH HOH . F 5 HOH A 27 427 738 HOH HOH . F 5 HOH A 28 428 808 HOH HOH . F 5 HOH A 29 429 660 HOH HOH . F 5 HOH A 30 430 773 HOH HOH . F 5 HOH A 31 431 640 HOH HOH . F 5 HOH A 32 432 690 HOH HOH . F 5 HOH A 33 433 680 HOH HOH . F 5 HOH A 34 434 643 HOH HOH . F 5 HOH A 35 435 744 HOH HOH . F 5 HOH A 36 436 728 HOH HOH . F 5 HOH A 37 437 811 HOH HOH . F 5 HOH A 38 438 757 HOH HOH . F 5 HOH A 39 439 658 HOH HOH . F 5 HOH A 40 440 714 HOH HOH . F 5 HOH A 41 441 662 HOH HOH . F 5 HOH A 42 442 625 HOH HOH . F 5 HOH A 43 443 697 HOH HOH . F 5 HOH A 44 444 654 HOH HOH . F 5 HOH A 45 445 664 HOH HOH . F 5 HOH A 46 446 637 HOH HOH . F 5 HOH A 47 447 765 HOH HOH . F 5 HOH A 48 448 648 HOH HOH . F 5 HOH A 49 449 695 HOH HOH . F 5 HOH A 50 450 701 HOH HOH . F 5 HOH A 51 451 735 HOH HOH . F 5 HOH A 52 452 605 HOH HOH . F 5 HOH A 53 453 816 HOH HOH . F 5 HOH A 54 454 603 HOH HOH . F 5 HOH A 55 455 652 HOH HOH . F 5 HOH A 56 456 731 HOH HOH . F 5 HOH A 57 457 799 HOH HOH . F 5 HOH A 58 458 702 HOH HOH . F 5 HOH A 59 459 611 HOH HOH . F 5 HOH A 60 460 663 HOH HOH . F 5 HOH A 61 461 746 HOH HOH . F 5 HOH A 62 462 778 HOH HOH . F 5 HOH A 63 463 707 HOH HOH . F 5 HOH A 64 464 649 HOH HOH . F 5 HOH A 65 465 657 HOH HOH . F 5 HOH A 66 466 745 HOH HOH . F 5 HOH A 67 467 819 HOH HOH . F 5 HOH A 68 468 684 HOH HOH . F 5 HOH A 69 469 712 HOH HOH . F 5 HOH A 70 470 615 HOH HOH . F 5 HOH A 71 471 604 HOH HOH . F 5 HOH A 72 472 772 HOH HOH . F 5 HOH A 73 473 633 HOH HOH . F 5 HOH A 74 474 687 HOH HOH . F 5 HOH A 75 475 618 HOH HOH . F 5 HOH A 76 476 629 HOH HOH . F 5 HOH A 77 477 725 HOH HOH . F 5 HOH A 78 478 627 HOH HOH . F 5 HOH A 79 479 616 HOH HOH . F 5 HOH A 80 480 740 HOH HOH . F 5 HOH A 81 481 624 HOH HOH . F 5 HOH A 82 482 609 HOH HOH . F 5 HOH A 83 483 779 HOH HOH . F 5 HOH A 84 484 608 HOH HOH . F 5 HOH A 85 485 635 HOH HOH . F 5 HOH A 86 486 682 HOH HOH . F 5 HOH A 87 487 786 HOH HOH . F 5 HOH A 88 488 726 HOH HOH . F 5 HOH A 89 489 607 HOH HOH . F 5 HOH A 90 490 732 HOH HOH . F 5 HOH A 91 491 813 HOH HOH . F 5 HOH A 92 492 693 HOH HOH . F 5 HOH A 93 493 645 HOH HOH . F 5 HOH A 94 494 630 HOH HOH . F 5 HOH A 95 495 768 HOH HOH . F 5 HOH A 96 496 752 HOH HOH . F 5 HOH A 97 497 613 HOH HOH . F 5 HOH A 98 498 818 HOH HOH . F 5 HOH A 99 499 626 HOH HOH . F 5 HOH A 100 500 665 HOH HOH . F 5 HOH A 101 501 656 HOH HOH . F 5 HOH A 102 502 788 HOH HOH . F 5 HOH A 103 503 678 HOH HOH . F 5 HOH A 104 504 802 HOH HOH . F 5 HOH A 105 505 601 HOH HOH . F 5 HOH A 106 506 749 HOH HOH . F 5 HOH A 107 507 621 HOH HOH . F 5 HOH A 108 508 639 HOH HOH . F 5 HOH A 109 509 706 HOH HOH . F 5 HOH A 110 510 791 HOH HOH . F 5 HOH A 111 511 723 HOH HOH . F 5 HOH A 112 512 770 HOH HOH . F 5 HOH A 113 513 805 HOH HOH . F 5 HOH A 114 514 641 HOH HOH . F 5 HOH A 115 515 787 HOH HOH . F 5 HOH A 116 516 620 HOH HOH . F 5 HOH A 117 517 760 HOH HOH . F 5 HOH A 118 518 720 HOH HOH . F 5 HOH A 119 519 686 HOH HOH . F 5 HOH A 120 520 602 HOH HOH . F 5 HOH A 121 521 619 HOH HOH . F 5 HOH A 122 522 622 HOH HOH . F 5 HOH A 123 523 743 HOH HOH . F 5 HOH A 124 524 759 HOH HOH . F 5 HOH A 125 525 632 HOH HOH . F 5 HOH A 126 526 650 HOH HOH . F 5 HOH A 127 527 612 HOH HOH . F 5 HOH A 128 528 817 HOH HOH . F 5 HOH A 129 529 659 HOH HOH . F 5 HOH A 130 530 713 HOH HOH . F 5 HOH A 131 531 774 HOH HOH . F 5 HOH A 132 532 775 HOH HOH . F 5 HOH A 133 533 679 HOH HOH . F 5 HOH A 134 534 688 HOH HOH . F 5 HOH A 135 535 623 HOH HOH . F 5 HOH A 136 536 807 HOH HOH . F 5 HOH A 137 537 614 HOH HOH . F 5 HOH A 138 538 617 HOH HOH . F 5 HOH A 139 539 734 HOH HOH . F 5 HOH A 140 540 628 HOH HOH . F 5 HOH A 141 541 771 HOH HOH . F 5 HOH A 142 542 653 HOH HOH . F 5 HOH A 143 543 789 HOH HOH . F 5 HOH A 144 544 750 HOH HOH . F 5 HOH A 145 545 751 HOH HOH . F 5 HOH A 146 546 742 HOH HOH . F 5 HOH A 147 547 655 HOH HOH . F 5 HOH A 148 548 636 HOH HOH . F 5 HOH A 149 549 793 HOH HOH . F 5 HOH A 150 550 820 HOH HOH . F 5 HOH A 151 551 761 HOH HOH . F 5 HOH A 152 552 651 HOH HOH . F 5 HOH A 153 553 661 HOH HOH . F 5 HOH A 154 554 699 HOH HOH . F 5 HOH A 155 555 785 HOH HOH . F 5 HOH A 156 556 644 HOH HOH . F 5 HOH A 157 557 724 HOH HOH . F 5 HOH A 158 558 698 HOH HOH . F 5 HOH A 159 559 691 HOH HOH . F 5 HOH A 160 560 822 HOH HOH . F 5 HOH A 161 561 638 HOH HOH . F 5 HOH A 162 562 821 HOH HOH . F 5 HOH A 163 563 815 HOH HOH . F 5 HOH A 164 564 795 HOH HOH . F 5 HOH A 165 565 798 HOH HOH . F 5 HOH A 166 566 755 HOH HOH . F 5 HOH A 167 567 704 HOH HOH . F 5 HOH A 168 568 814 HOH HOH . F 5 HOH A 169 569 696 HOH HOH . F 5 HOH A 170 570 767 HOH HOH . F 5 HOH A 171 571 784 HOH HOH . F 5 HOH A 172 572 703 HOH HOH . F 5 HOH A 173 573 747 HOH HOH . F 5 HOH A 174 574 692 HOH HOH . F 5 HOH A 175 575 809 HOH HOH . F 5 HOH A 176 576 694 HOH HOH . F 5 HOH A 177 577 710 HOH HOH . F 5 HOH A 178 578 737 HOH HOH . F 5 HOH A 179 579 689 HOH HOH . F 5 HOH A 180 580 700 HOH HOH . F 5 HOH A 181 581 762 HOH HOH . F 5 HOH A 182 582 741 HOH HOH . F 5 HOH A 183 583 766 HOH HOH . F 5 HOH A 184 584 681 HOH HOH . F 5 HOH A 185 585 790 HOH HOH . F 5 HOH A 186 586 729 HOH HOH . F 5 HOH A 187 587 646 HOH HOH . F 5 HOH A 188 588 711 HOH HOH . F 5 HOH A 189 589 736 HOH HOH . F 5 HOH A 190 590 763 HOH HOH . F 5 HOH A 191 591 748 HOH HOH . F 5 HOH A 192 592 796 HOH HOH . F 5 HOH A 193 593 667 HOH HOH . F 5 HOH A 194 594 705 HOH HOH . F 5 HOH A 195 595 709 HOH HOH . F 5 HOH A 196 596 647 HOH HOH . F 5 HOH A 197 597 716 HOH HOH . F 5 HOH A 198 598 769 HOH HOH . F 5 HOH A 199 599 756 HOH HOH . F 5 HOH A 200 600 753 HOH HOH . F 5 HOH A 201 601 754 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 4 16.126 -9.893 25.243 0.8 37.7 ? N1 EPE 304 A 1 HETATM 2 C C2 EPE . . . E 4 16.845 -10.685 24.236 0.8 38.84 ? C2 EPE 304 A 1 HETATM 3 C C3 EPE . . . E 4 18.327 -10.343 24.264 0.8 42.07 ? C3 EPE 304 A 1 HETATM 4 N N4 EPE . . . E 4 18.535 -8.894 24.064 0.8 38.24 ? N4 EPE 304 A 1 HETATM 5 C C5 EPE . . . E 4 17.904 -8.159 25.171 0.8 38.64 ? C5 EPE 304 A 1 HETATM 6 C C6 EPE . . . E 4 16.403 -8.442 25.139 0.8 40.9 ? C6 EPE 304 A 1 HETATM 7 C C7 EPE . . . E 4 19.978 -8.614 24.051 0.8 42.75 ? C7 EPE 304 A 1 HETATM 8 C C8 EPE . . . E 4 20.273 -7.217 23.51 0.8 40.85 ? C8 EPE 304 A 1 HETATM 9 O O8 EPE . . . E 4 19.973 -7.152 22.111 0.8 43.57 ? O8 EPE 304 A 1 HETATM 10 C C9 EPE . . . E 4 14.688 -10.097 25.023 0.8 36.03 ? C9 EPE 304 A 1 HETATM 11 C C10 EPE . . . E 4 13.939 -9.395 26.148 0.8 28.07 ? C10 EPE 304 A 1 HETATM 12 S S EPE . . . E 4 12.295 -9.615 26.039 0.8 27.11 ? S EPE 304 A 1 HETATM 13 O O1S EPE . . . E 4 11.955 -8.823 24.807 0.8 24.36 ? O1S EPE 304 A 1 HETATM 14 O O2S EPE . . . E 4 12.094 -11.084 25.924 0.8 31.03 ? O2S EPE 304 A 1 HETATM 15 O O3S EPE . . . E 4 11.979 -9.136 27.397 0.8 22.48 ? O3S EPE 304 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #