data_6JF0 # _model_server_result.job_id JYLIo1eRRW-gGWJjQx3Vlg _model_server_result.datetime_utc '2025-08-31 20:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6JF0 # _exptl.entry_id 6JF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.57 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2~{S})-3-[4-[3-(4-methoxy-2-oxidanyl-phenyl)prop-2-ynoyloxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.26 _cell.angle_gamma 90 _cell.entry_id 6JF0 _cell.length_a 92.12 _cell.length_b 61.23 _cell.length_c 117.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.06 30.615 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H27 N O7' _chem_comp.formula_weight 549.57 _chem_comp.id EB6 _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2~{S})-3-[4-[3-(4-methoxy-2-oxidanyl-phenyl)prop-2-ynoyloxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C29 EB6 sing 83 n n O5 C32 EB6 sing 84 n n C30 C29 EB6 doub 85 n y C30 C31 EB6 sing 86 n y O6 C31 EB6 sing 87 n n C29 C28 EB6 sing 88 n y C31 C26 EB6 doub 89 n y C28 C27 EB6 doub 90 n y C26 C27 EB6 sing 91 n y C26 C25 EB6 sing 92 n n C1 C2 EB6 doub 93 n y C1 C EB6 sing 94 n y C2 C3 EB6 sing 95 n y C25 C24 EB6 trip 96 n n O4 C23 EB6 doub 97 n n C24 C23 EB6 sing 98 n n C23 O3 EB6 sing 99 n n C C5 EB6 doub 100 n y C3 C4 EB6 doub 101 n y O3 C20 EB6 sing 102 n n C5 C4 EB6 sing 103 n y C5 C6 EB6 sing 104 n n C19 C20 EB6 doub 105 n y C19 C18 EB6 sing 106 n y C20 C21 EB6 sing 107 n y C6 O EB6 doub 108 n n C6 C7 EB6 sing 109 n n C8 C7 EB6 doub 110 n y C8 C9 EB6 sing 111 n y C18 C16 EB6 doub 112 n y C7 C12 EB6 sing 113 n y C21 C22 EB6 doub 114 n y C9 C10 EB6 doub 115 n y C16 C22 EB6 sing 116 n y C16 C15 EB6 sing 117 n n C12 N EB6 sing 118 n n C12 C11 EB6 doub 119 n y N C13 EB6 sing 120 n n C10 C11 EB6 sing 121 n y C15 C13 EB6 sing 122 n n C13 C14 EB6 sing 123 n n C14 O1 EB6 sing 124 n n C14 O2 EB6 doub 125 n n O1 C17 EB6 sing 126 n n C4 H1 EB6 sing 127 n n C2 H2 EB6 sing 128 n n O6 H3 EB6 sing 129 n n C30 H4 EB6 sing 130 n n C32 H5 EB6 sing 131 n n C32 H6 EB6 sing 132 n n C32 H7 EB6 sing 133 n n C28 H8 EB6 sing 134 n n C27 H9 EB6 sing 135 n n C19 H10 EB6 sing 136 n n C18 H11 EB6 sing 137 n n C21 H12 EB6 sing 138 n n C22 H13 EB6 sing 139 n n C15 H14 EB6 sing 140 n n C15 H15 EB6 sing 141 n n C13 H16 EB6 sing 142 n n C17 H17 EB6 sing 143 n n C17 H18 EB6 sing 144 n n C17 H19 EB6 sing 145 n n N H20 EB6 sing 146 n n C11 H21 EB6 sing 147 n n C10 H22 EB6 sing 148 n n C9 H23 EB6 sing 149 n n C8 H24 EB6 sing 150 n n C H25 EB6 sing 151 n n C3 H26 EB6 sing 152 n n C1 H27 EB6 sing 153 n n # _atom_sites.entry_id 6JF0 _atom_sites.fract_transf_matrix[1][1] 0.010855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002359 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EB6 A 1 501 1 EB6 YF3 . D 3 EBF B 1 501 1 EBF MeO . E 4 HOH A 1 601 5 HOH HOH . E 4 HOH A 2 602 97 HOH HOH . E 4 HOH A 3 603 102 HOH HOH . E 4 HOH A 4 604 31 HOH HOH . E 4 HOH A 5 605 103 HOH HOH . E 4 HOH A 6 606 99 HOH HOH . F 4 HOH B 1 601 104 HOH HOH . F 4 HOH B 2 602 29 HOH HOH . F 4 HOH B 3 603 100 HOH HOH . F 4 HOH B 4 604 15 HOH HOH . F 4 HOH B 5 605 98 HOH HOH . F 4 HOH B 6 606 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EB6 . . . C 2 24.237 18.329 12.666 1 36.54 ? C4 EB6 501 A 1 HETATM 2 C C2 EB6 . . . C 2 24.388 18.329 10.27 1 35.8 ? C2 EB6 501 A 1 HETATM 3 O O4 EB6 . . . C 2 15.998 16.198 10.538 1 34.86 ? O4 EB6 501 A 1 HETATM 4 C C23 EB6 . . . C 2 15.418 17.036 11.222 1 34.52 ? C23 EB6 501 A 1 HETATM 5 C C24 EB6 . . . C 2 15.253 18.194 10.777 1 33.3 ? C24 EB6 501 A 1 HETATM 6 C C25 EB6 . . . C 2 15.085 19.275 10.331 1 32.36 ? C25 EB6 501 A 1 HETATM 7 C C26 EB6 . . . C 2 14.928 20.462 9.869 1 31.66 ? C26 EB6 501 A 1 HETATM 8 C C31 EB6 . . . C 2 15.873 21.013 8.869 1 30.98 ? C31 EB6 501 A 1 HETATM 9 O O6 EB6 . . . C 2 16.922 20.267 8.427 1 31.1 ? O6 EB6 501 A 1 HETATM 10 C C30 EB6 . . . C 2 15.677 22.305 8.394 1 30.26 ? C30 EB6 501 A 1 HETATM 11 C C29 EB6 . . . C 2 14.601 23.058 8.853 1 30.05 ? C29 EB6 501 A 1 HETATM 12 O O5 EB6 . . . C 2 14.424 24.329 8.376 1 28.69 ? O5 EB6 501 A 1 HETATM 13 C C32 EB6 . . . C 2 14.924 25.442 9.119 1 28.03 ? C32 EB6 501 A 1 HETATM 14 C C28 EB6 . . . C 2 13.709 22.536 9.795 1 31.01 ? C28 EB6 501 A 1 HETATM 15 C C27 EB6 . . . C 2 13.868 21.253 10.296 1 31.57 ? C27 EB6 501 A 1 HETATM 16 O O3 EB6 . . . C 2 14.93 16.693 12.554 1 35.25 ? O3 EB6 501 A 1 HETATM 17 C C20 EB6 . . . C 2 15.797 16.679 13.612 1 34.94 ? C20 EB6 501 A 1 HETATM 18 C C19 EB6 . . . C 2 17.07 16.133 13.467 1 35.2 ? C19 EB6 501 A 1 HETATM 19 C C18 EB6 . . . C 2 17.944 16.12 14.542 1 36.24 ? C18 EB6 501 A 1 HETATM 20 C C21 EB6 . . . C 2 15.409 17.223 14.835 1 35.1 ? C21 EB6 501 A 1 HETATM 21 C C22 EB6 . . . C 2 16.295 17.211 15.908 1 35.57 ? C22 EB6 501 A 1 HETATM 22 C C16 EB6 . . . C 2 17.559 16.659 15.766 1 36.02 ? C16 EB6 501 A 1 HETATM 23 C C15 EB6 . . . C 2 18.522 16.654 16.932 1 35.41 ? C15 EB6 501 A 1 HETATM 24 C C13 EB6 . . . C 2 19.207 18.014 17.04 1 36.08 ? C13 EB6 501 A 1 HETATM 25 C C14 EB6 . . . C 2 19.364 18.389 18.479 1 36.99 ? C14 EB6 501 A 1 HETATM 26 O O2 EB6 . . . C 2 19.757 17.571 19.288 1 38.52 ? O2 EB6 501 A 1 HETATM 27 O O1 EB6 . . . C 2 19.054 19.737 18.924 1 36.37 ? O1 EB6 501 A 1 HETATM 28 C C17 EB6 . . . C 2 20.097 20.561 19.473 1 35.55 ? C17 EB6 501 A 1 HETATM 29 N N EB6 . . . C 2 20.464 17.981 16.325 1 36.15 ? N EB6 501 A 1 HETATM 30 C C12 EB6 . . . C 2 21.102 19.12 15.993 1 36.78 ? C12 EB6 501 A 1 HETATM 31 C C11 EB6 . . . C 2 20.948 20.271 16.753 1 37.17 ? C11 EB6 501 A 1 HETATM 32 C C10 EB6 . . . C 2 21.547 21.452 16.355 1 37.94 ? C10 EB6 501 A 1 HETATM 33 C C9 EB6 . . . C 2 22.278 21.521 15.192 1 37.87 ? C9 EB6 501 A 1 HETATM 34 C C8 EB6 . . . C 2 22.459 20.423 14.379 1 36.97 ? C8 EB6 501 A 1 HETATM 35 C C7 EB6 . . . C 2 21.885 19.204 14.732 1 36.88 ? C7 EB6 501 A 1 HETATM 36 C C6 EB6 . . . C 2 22.059 18.003 13.853 1 37.41 ? C6 EB6 501 A 1 HETATM 37 O O EB6 . . . C 2 21.522 16.951 14.157 1 38.02 ? O EB6 501 A 1 HETATM 38 C C5 EB6 . . . C 2 22.869 18.117 12.595 1 36.96 ? C5 EB6 501 A 1 HETATM 39 C C EB6 . . . C 2 22.253 18.021 11.355 1 36.4 ? C EB6 501 A 1 HETATM 40 C C3 EB6 . . . C 2 24.994 18.446 11.506 1 36.18 ? C3 EB6 501 A 1 HETATM 41 C C1 EB6 . . . C 2 23.014 18.124 10.198 1 36.12 ? C1 EB6 501 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #