data_6JF0 # _model_server_result.job_id ayWItAiVMkZhCCBvvkKO_g _model_server_result.datetime_utc '2025-08-31 21:38:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6JF0 # _exptl.entry_id 6JF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.169 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-methoxychromen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.26 _cell.angle_gamma 90 _cell.entry_id 6JF0 _cell.length_a 92.12 _cell.length_b 61.23 _cell.length_c 117.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.06 30.615 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H8 O3' _chem_comp.formula_weight 176.169 _chem_comp.id EBF _chem_comp.mon_nstd_flag . _chem_comp.name 7-methoxychromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C6 EBF doub 154 n n C7 C6 EBF sing 155 n n C7 C8 EBF doub 156 n n C6 O EBF sing 157 n n O C3 EBF sing 158 n n C8 C4 EBF sing 159 n n C3 C4 EBF doub 160 n y C3 C2 EBF sing 161 n y C4 C5 EBF sing 162 n y C2 C1 EBF doub 163 n y C5 C EBF doub 164 n y C9 O2 EBF sing 165 n n C1 C EBF sing 166 n y C1 O2 EBF sing 167 n n C7 H1 EBF sing 168 n n C8 H2 EBF sing 169 n n C5 H3 EBF sing 170 n n C H4 EBF sing 171 n n C2 H5 EBF sing 172 n n C9 H6 EBF sing 173 n n C9 H7 EBF sing 174 n n C9 H8 EBF sing 175 n n # _atom_sites.entry_id 6JF0 _atom_sites.fract_transf_matrix[1][1] 0.010855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002359 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EB6 A 1 501 1 EB6 YF3 . D 3 EBF B 1 501 1 EBF MeO . E 4 HOH A 1 601 5 HOH HOH . E 4 HOH A 2 602 97 HOH HOH . E 4 HOH A 3 603 102 HOH HOH . E 4 HOH A 4 604 31 HOH HOH . E 4 HOH A 5 605 103 HOH HOH . E 4 HOH A 6 606 99 HOH HOH . F 4 HOH B 1 601 104 HOH HOH . F 4 HOH B 2 602 29 HOH HOH . F 4 HOH B 3 603 100 HOH HOH . F 4 HOH B 4 604 15 HOH HOH . F 4 HOH B 5 605 98 HOH HOH . F 4 HOH B 6 606 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 EBF . . . D 3 34.658 -10.838 39.711 1 39.52 ? O1 EBF 501 B 1 HETATM 2 C C6 EBF . . . D 3 35.734 -10.569 40.277 1 37.84 ? C6 EBF 501 B 1 HETATM 3 C C7 EBF . . . D 3 36.202 -9.249 40.26 1 37.51 ? C7 EBF 501 B 1 HETATM 4 C C8 EBF . . . D 3 37.353 -8.874 41.045 1 37.6 ? C8 EBF 501 B 1 HETATM 5 C C4 EBF . . . D 3 38.076 -9.914 41.635 1 37.11 ? C4 EBF 501 B 1 HETATM 6 C C5 EBF . . . D 3 39.355 -9.676 42.184 1 36.13 ? C5 EBF 501 B 1 HETATM 7 C C EBF . . . D 3 40.044 -10.726 42.792 1 36.32 ? C EBF 501 B 1 HETATM 8 O O EBF . . . D 3 36.42 -11.588 40.888 1 37.36 ? O EBF 501 B 1 HETATM 9 C C3 EBF . . . D 3 37.605 -11.326 41.512 1 37.51 ? C3 EBF 501 B 1 HETATM 10 C C2 EBF . . . D 3 38.323 -12.336 42.13 1 37.51 ? C2 EBF 501 B 1 HETATM 11 C C1 EBF . . . D 3 39.534 -12.03 42.766 1 37.03 ? C1 EBF 501 B 1 HETATM 12 O O2 EBF . . . D 3 40.238 -13.036 43.372 1 36.61 ? O2 EBF 501 B 1 HETATM 13 C C9 EBF . . . D 3 40.912 -14.01 42.565 1 35.69 ? C9 EBF 501 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 408 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #