data_6JF3
#
_model_server_result.job_id            F2qO5RVWA1Ip3YvfF5PPtQ 
_model_server_result.datetime_utc      '2024-10-10 13:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6JF3 
#
_exptl.entry_id    6JF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              385.498 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ACTINONIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JF3 
_cell.length_a            39.728 
_cell.length_b            70.786 
_cell.length_c            110.859 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 102 A CYS 103 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc2 A NE2 HIS 144 A HIS 145 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc3 A NE2 HIS 148 A HIS 149 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc4 C ZN ZN . A ZN 201 1_555 D O4 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc5 C ZN ZN . A ZN 201 1_555 D O2 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc6 B SG CYS 102 B CYS 103 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc7 B NE2 HIS 144 B HIS 145 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc8 B NE2 HIS 148 B HIS 149 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc9 E ZN ZN . B ZN 201 1_555 F O2 BB2 . B BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc10 E ZN ZN . B ZN 201 1_555 F O4 BB2 . B BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'C19 H35 N3 O5' 
_chem_comp.formula_weight    385.498 
_chem_comp.id                BB2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ACTINONIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C3 BB2 sing 70 n n 
C5 C6 BB2 sing 71 n n 
C5 H51 BB2 sing 72 n n 
C5 H52 BB2 sing 73 n n 
C3 O4 BB2 doub 74 n n 
C3 N1 BB2 sing 75 n n 
N1 O2 BB2 sing 76 n n 
N1 HN1 BB2 sing 77 n n 
O2 HO2 BB2 sing 78 n n 
C6 C12 BB2 sing 79 n n 
C6 C7 BB2 sing 80 n n 
C6 H6 BB2 sing 81 n n 
C12 O13 BB2 doub 82 n n 
C12 N14 BB2 sing 83 n n 
C7 C8 BB2 sing 84 n n 
C7 H71 BB2 sing 85 n n 
C7 H72 BB2 sing 86 n n 
C8 C9 BB2 sing 87 n n 
C8 H81 BB2 sing 88 n n 
C8 H82 BB2 sing 89 n n 
C9 C10 BB2 sing 90 n n 
C9 H91 BB2 sing 91 n n 
C9 H92 BB2 sing 92 n n 
C10 C11 BB2 sing 93 n n 
C10 H101 BB2 sing 94 n n 
C10 H102 BB2 sing 95 n n 
C11 H111 BB2 sing 96 n n 
C11 H112 BB2 sing 97 n n 
C11 H113 BB2 sing 98 n n 
N14 C15 BB2 sing 99 n n 
N14 H14 BB2 sing 100 n n 
C15 C16 BB2 sing 101 n n 
C15 C19 BB2 sing 102 n n 
C15 H15 BB2 sing 103 n n 
C16 C18 BB2 sing 104 n n 
C16 C17 BB2 sing 105 n n 
C16 H16 BB2 sing 106 n n 
C18 H181 BB2 sing 107 n n 
C18 H182 BB2 sing 108 n n 
C18 H183 BB2 sing 109 n n 
C17 H171 BB2 sing 110 n n 
C17 H172 BB2 sing 111 n n 
C17 H173 BB2 sing 112 n n 
C19 O20 BB2 doub 113 n n 
C19 N21 BB2 sing 114 n n 
N21 C22 BB2 sing 115 n n 
N21 C23 BB2 sing 116 n n 
C22 C25 BB2 sing 117 n n 
C22 C26 BB2 sing 118 n n 
C22 H22 BB2 sing 119 n n 
C23 C24 BB2 sing 120 n n 
C23 H231 BB2 sing 121 n n 
C23 H232 BB2 sing 122 n n 
C24 C25 BB2 sing 123 n n 
C24 H241 BB2 sing 124 n n 
C24 H242 BB2 sing 125 n n 
C25 H251 BB2 sing 126 n n 
C25 H252 BB2 sing 127 n n 
C26 O27 BB2 sing 128 n n 
C26 H261 BB2 sing 129 n n 
C26 H262 BB2 sing 130 n n 
O27 H27 BB2 sing 131 n n 
#
_atom_sites.entry_id                     6JF3 
_atom_sites.fract_transf_matrix[1][1]    0.025171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00902 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 2 ZN ZN . 
D 3 BB2 A 1 202 2 BB2 BB2 . 
E 2 ZN B 1 201 1 ZN ZN . 
F 3 BB2 B 1 202 1 BB2 BB2 . 
G 4 HOH A 1 301 17 HOH HOH . 
G 4 HOH A 2 302 18 HOH HOH . 
G 4 HOH A 3 303 2 HOH HOH . 
G 4 HOH A 4 304 5 HOH HOH . 
G 4 HOH A 5 305 11 HOH HOH . 
G 4 HOH A 6 306 14 HOH HOH . 
G 4 HOH A 7 307 8 HOH HOH . 
G 4 HOH A 8 308 21 HOH HOH . 
G 4 HOH A 9 309 20 HOH HOH . 
G 4 HOH A 10 310 10 HOH HOH . 
G 4 HOH A 11 311 6 HOH HOH . 
H 4 HOH B 1 301 1 HOH HOH . 
H 4 HOH B 2 302 3 HOH HOH . 
H 4 HOH B 3 303 23 HOH HOH . 
H 4 HOH B 4 304 22 HOH HOH . 
H 4 HOH B 5 305 24 HOH HOH . 
H 4 HOH B 6 306 15 HOH HOH . 
H 4 HOH B 7 307 13 HOH HOH . 
H 4 HOH B 8 308 9 HOH HOH . 
H 4 HOH B 9 309 7 HOH HOH . 
H 4 HOH B 10 310 12 HOH HOH . 
H 4 HOH B 11 311 19 HOH HOH . 
H 4 HOH B 12 312 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 BB2 . . . D 3 1.649 -2.072 2.318 1 50.72 ? C5 BB2 202 A 1 
HETATM 2 C C3 BB2 . . . D 3 1.092 -0.842 2.988 1 49.47 ? C3 BB2 202 A 1 
HETATM 3 O O4 BB2 . . . D 3 0.013 -0.888 3.551 1 45.6 ? O4 BB2 202 A 1 
HETATM 4 N N1 BB2 . . . D 3 1.815 0.275 2.861 1 49.82 ? N1 BB2 202 A 1 
HETATM 5 O O2 BB2 . . . D 3 1.327 1.515 3.255 1 48.87 ? O2 BB2 202 A 1 
HETATM 6 C C6 BB2 . . . D 3 0.934 -2.308 0.986 1 52.46 ? C6 BB2 202 A 1 
HETATM 7 C C12 BB2 . . . D 3 1.296 -3.693 0.595 1 50.86 ? C12 BB2 202 A 1 
HETATM 8 O O13 BB2 . . . D 3 2.463 -4.028 0.722 1 45.12 ? O13 BB2 202 A 1 
HETATM 9 C C7 BB2 . . . D 3 1.353 -1.353 -0.144 1 49.77 ? C7 BB2 202 A 1 
HETATM 10 C C8 BB2 . . . D 3 0.362 -1.444 -1.319 1 51.91 ? C8 BB2 202 A 1 
HETATM 11 C C9 BB2 . . . D 3 0.77 -0.638 -2.548 1 49.31 ? C9 BB2 202 A 1 
HETATM 12 C C10 BB2 . . . D 3 -0.103 -1.025 -3.742 1 50.7 ? C10 BB2 202 A 1 
HETATM 13 C C11 BB2 . . . D 3 -0.034 0.032 -4.818 1 50.11 ? C11 BB2 202 A 1 
HETATM 14 N N14 BB2 . . . D 3 0.345 -4.461 0.075 1 59.7 ? N14 BB2 202 A 1 
HETATM 15 C C15 BB2 . . . D 3 0.647 -5.766 -0.532 1 67.24 ? C15 BB2 202 A 1 
HETATM 16 C C16 BB2 . . . D 3 0.085 -6.891 0.355 1 65.6 ? C16 BB2 202 A 1 
HETATM 17 C C18 BB2 . . . D 3 0.59 -6.718 1.807 1 59.86 ? C18 BB2 202 A 1 
HETATM 18 C C17 BB2 . . . D 3 -1.444 -6.994 0.271 1 64.98 ? C17 BB2 202 A 1 
HETATM 19 C C19 BB2 . . . D 3 0.244 -5.794 -2.021 1 73.21 ? C19 BB2 202 A 1 
HETATM 20 O O20 BB2 . . . D 3 -0.762 -5.155 -2.398 1 60.23 ? O20 BB2 202 A 1 
HETATM 21 N N21 BB2 . . . D 3 1.046 -6.492 -2.886 1 74.81 ? N21 BB2 202 A 1 
HETATM 22 C C22 BB2 . . . D 3 0.806 -6.482 -4.349 1 76 ? C22 BB2 202 A 1 
HETATM 23 C C23 BB2 . . . D 3 2.235 -7.307 -2.552 1 73.4 ? C23 BB2 202 A 1 
HETATM 24 C C24 BB2 . . . D 3 2.807 -7.799 -3.871 1 72.15 ? C24 BB2 202 A 1 
HETATM 25 C C25 BB2 . . . D 3 2.101 -7.017 -4.966 1 75.24 ? C25 BB2 202 A 1 
HETATM 26 C C26 BB2 . . . D 3 -0.406 -7.363 -4.678 1 77.01 ? C26 BB2 202 A 1 
HETATM 27 O O27 BB2 . . . D 3 -1.534 -6.539 -4.981 1 77.6 ? O27 BB2 202 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#