data_6JF4 # _model_server_result.job_id 1go6nLEBrTIY3UUdpftGcg _model_server_result.datetime_utc '2024-10-10 09:32:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6JF4 # _exptl.entry_id 6JF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JF4 _cell.length_a 40.967 _cell.length_b 77.351 _cell.length_c 96.582 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 102 B CYS 103 1_555 C ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A NE2 HIS 144 B HIS 145 1_555 C ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 A NE2 HIS 148 B HIS 149 1_555 C ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 C ZN ZN . B ZN 201 1_555 D O2 K1U . B K1U 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc5 B SG CYS 102 A CYS 103 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 B NE2 HIS 144 A HIS 145 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 B NE2 HIS 148 A HIS 149 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc8 E ZN ZN . A ZN 201 1_555 F O1 K1U . A K1U 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? # _chem_comp.formula 'C19 H18 O4 S' _chem_comp.formula_weight 342.409 _chem_comp.id K1U _chem_comp.mon_nstd_flag . _chem_comp.name '(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C8 K1U doub 173 n n C8 O1 K1U sing 174 n n C8 C24 K1U sing 175 n n C24 C9 K1U sing 176 n n C9 C1 K1U sing 177 n n C9 C10 K1U sing 178 n n C1 C2 K1U sing 179 n n C10 O3 K1U doub 180 n n C10 S1 K1U sing 181 n n C3 C2 K1U doub 182 n y C3 C4 K1U sing 183 n y C2 C7 K1U sing 184 n y S1 C11 K1U sing 185 n n C11 C12 K1U sing 186 n n C4 C5 K1U doub 187 n y C7 C6 K1U doub 188 n y C12 O4 K1U doub 189 n n C12 C13 K1U sing 190 n n C5 C6 K1U sing 191 n y C13 C18 K1U doub 192 n y C13 C14 K1U sing 193 n y C18 C17 K1U sing 194 n y C14 C15 K1U doub 195 n y C17 C16 K1U doub 196 n y C15 C16 K1U sing 197 n y O1 H1 K1U sing 198 n n C24 H2 K1U sing 199 n n C24 H3 K1U sing 200 n n C9 H4 K1U sing 201 n n C1 H5 K1U sing 202 n n C1 H6 K1U sing 203 n n C3 H7 K1U sing 204 n n C4 H8 K1U sing 205 n n C5 H9 K1U sing 206 n n C6 H10 K1U sing 207 n n C7 H11 K1U sing 208 n n C11 H12 K1U sing 209 n n C11 H13 K1U sing 210 n n C14 H14 K1U sing 211 n n C15 H15 K1U sing 212 n n C16 H16 K1U sing 213 n n C17 H17 K1U sing 214 n n C18 H18 K1U sing 215 n n # _atom_sites.entry_id 6JF4 _atom_sites.fract_transf_matrix[1][1] 0.02441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN B 1 201 1 ZN ZN . D 3 K1U B 1 202 1 K1U K1U . E 2 ZN A 1 201 2 ZN ZN . F 3 K1U A 1 202 2 K1U K1U . G 4 HOH B 1 301 14 HOH HOH . G 4 HOH B 2 302 3 HOH HOH . G 4 HOH B 3 303 10 HOH HOH . G 4 HOH B 4 304 34 HOH HOH . G 4 HOH B 5 305 31 HOH HOH . G 4 HOH B 6 306 4 HOH HOH . G 4 HOH B 7 307 22 HOH HOH . G 4 HOH B 8 308 6 HOH HOH . G 4 HOH B 9 309 15 HOH HOH . G 4 HOH B 10 310 7 HOH HOH . G 4 HOH B 11 311 11 HOH HOH . G 4 HOH B 12 312 32 HOH HOH . G 4 HOH B 13 313 2 HOH HOH . G 4 HOH B 14 314 1 HOH HOH . G 4 HOH B 15 315 37 HOH HOH . G 4 HOH B 16 316 19 HOH HOH . G 4 HOH B 17 317 27 HOH HOH . G 4 HOH B 18 318 17 HOH HOH . G 4 HOH B 19 319 33 HOH HOH . G 4 HOH B 20 320 41 HOH HOH . G 4 HOH B 21 321 18 HOH HOH . G 4 HOH B 22 322 44 HOH HOH . G 4 HOH B 23 323 23 HOH HOH . G 4 HOH B 24 324 36 HOH HOH . G 4 HOH B 25 325 25 HOH HOH . G 4 HOH B 26 326 29 HOH HOH . G 4 HOH B 27 327 38 HOH HOH . G 4 HOH B 28 328 21 HOH HOH . G 4 HOH B 29 329 30 HOH HOH . H 4 HOH A 1 301 40 HOH HOH . H 4 HOH A 2 302 9 HOH HOH . H 4 HOH A 3 303 8 HOH HOH . H 4 HOH A 4 304 28 HOH HOH . H 4 HOH A 5 305 43 HOH HOH . H 4 HOH A 6 306 26 HOH HOH . H 4 HOH A 7 307 45 HOH HOH . H 4 HOH A 8 308 16 HOH HOH . H 4 HOH A 9 309 13 HOH HOH . H 4 HOH A 10 310 5 HOH HOH . H 4 HOH A 11 311 46 HOH HOH . H 4 HOH A 12 312 42 HOH HOH . H 4 HOH A 13 313 12 HOH HOH . H 4 HOH A 14 314 24 HOH HOH . H 4 HOH A 15 315 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 K1U . . . F 3 1.336 -19.432 -28.789 1 29.11 ? O1 K1U 202 A 1 HETATM 2 C C8 K1U . . . F 3 2.127 -18.837 -29.425 1 29.96 ? C8 K1U 202 A 1 HETATM 3 O O2 K1U . . . F 3 1.898 -17.584 -29.568 1 29.97 ? O2 K1U 202 A 1 HETATM 4 C C24 K1U . . . F 3 3.34 -19.47 -30.035 1 38.41 ? C24 K1U 202 A 1 HETATM 5 C C9 K1U . . . F 3 3.028 -19.982 -31.442 1 43.6 ? C9 K1U 202 A 1 HETATM 6 C C1 K1U . . . F 3 2.691 -18.942 -32.532 1 38.23 ? C1 K1U 202 A 1 HETATM 7 C C2 K1U . . . F 3 1.992 -19.38 -33.823 1 38.89 ? C2 K1U 202 A 1 HETATM 8 C C3 K1U . . . F 3 2.355 -20.505 -34.581 1 40.31 ? C3 K1U 202 A 1 HETATM 9 C C4 K1U . . . F 3 1.695 -20.835 -35.772 1 40.82 ? C4 K1U 202 A 1 HETATM 10 C C5 K1U . . . F 3 0.674 -20.025 -36.249 1 42.35 ? C5 K1U 202 A 1 HETATM 11 C C6 K1U . . . F 3 0.304 -18.893 -35.524 1 41.47 ? C6 K1U 202 A 1 HETATM 12 C C7 K1U . . . F 3 0.966 -18.572 -34.326 1 40.34 ? C7 K1U 202 A 1 HETATM 13 C C10 K1U . . . F 3 3.909 -21.167 -31.779 1 48.98 ? C10 K1U 202 A 1 HETATM 14 O O3 K1U . . . F 3 5.09 -20.996 -32.038 1 50.07 ? O3 K1U 202 A 1 HETATM 15 S S1 K1U . . . F 3 3.261 -22.698 -31.71 1 74.25 ? S1 K1U 202 A 1 HETATM 16 C C11 K1U . . . F 3 4.387 -24.076 -31.633 1 70.48 ? C11 K1U 202 A 1 HETATM 17 C C12 K1U . . . F 3 5.442 -24.082 -32.73 1 72.56 ? C12 K1U 202 A 1 HETATM 18 O O4 K1U . . . F 3 6.581 -24.221 -32.324 1 83.68 ? O4 K1U 202 A 1 HETATM 19 C C13 K1U . . . F 3 5.196 -23.964 -34.242 1 67.47 ? C13 K1U 202 A 1 HETATM 20 C C14 K1U . . . F 3 6.318 -23.885 -35.114 1 61.9 ? C14 K1U 202 A 1 HETATM 21 C C15 K1U . . . F 3 6.158 -23.793 -36.505 1 56.14 ? C15 K1U 202 A 1 HETATM 22 C C16 K1U . . . F 3 4.87 -23.778 -37.045 1 56 ? C16 K1U 202 A 1 HETATM 23 C C17 K1U . . . F 3 3.743 -23.855 -36.204 1 55.38 ? C17 K1U 202 A 1 HETATM 24 C C18 K1U . . . F 3 3.897 -23.945 -34.811 1 58.43 ? C18 K1U 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 24 #