data_6JFA
#
_model_server_result.job_id            RVrLE3Iqxv5Rr_wL1nuPng 
_model_server_result.datetime_utc      '2024-10-10 11:23:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6JFA 
#
_exptl.entry_id    6JFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JFA 
_cell.length_a            44.815 
_cell.length_b            122.826 
_cell.length_c            143.978 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,I 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 142 A HIS 145 1_555 D NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A NE2 HIS 146 A HIS 149 1_555 D NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc3 D NI NI . A NI 201 1_555 I O HOH . C HOH 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc4 G O HOH . A HOH 320 1_655 F NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc5 B OE1 GLU 22 B GLU 25 1_555 F NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc6 B OE2 GLU 22 B GLU 25 1_555 F NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc7 B NE2 HIS 142 B HIS 145 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc8 B NE2 HIS 146 B HIS 149 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc9 F NI NI . B NI 202 1_555 H O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6JFA 
_atom_sites.fract_transf_matrix[1][1]    0.022314 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006946 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NI A 1 201 1 NI NI . 
E 3 NI B 1 201 2 NI NI . 
F 3 NI B 1 202 3 NI NI . 
G 4 HOH A 1 301 252 HOH HOH . 
G 4 HOH A 2 302 28 HOH HOH . 
G 4 HOH A 3 303 209 HOH HOH . 
G 4 HOH A 4 304 103 HOH HOH . 
G 4 HOH A 5 305 96 HOH HOH . 
G 4 HOH A 6 306 23 HOH HOH . 
G 4 HOH A 7 307 41 HOH HOH . 
G 4 HOH A 8 308 25 HOH HOH . 
G 4 HOH A 9 309 10 HOH HOH . 
G 4 HOH A 10 310 49 HOH HOH . 
G 4 HOH A 11 311 57 HOH HOH . 
G 4 HOH A 12 312 12 HOH HOH . 
G 4 HOH A 13 313 43 HOH HOH . 
G 4 HOH A 14 314 30 HOH HOH . 
G 4 HOH A 15 315 216 HOH HOH . 
G 4 HOH A 16 316 89 HOH HOH . 
G 4 HOH A 17 317 228 HOH HOH . 
G 4 HOH A 18 318 211 HOH HOH . 
G 4 HOH A 19 319 8 HOH HOH . 
G 4 HOH A 20 320 236 HOH HOH . 
G 4 HOH A 21 321 82 HOH HOH . 
G 4 HOH A 22 322 22 HOH HOH . 
G 4 HOH A 23 323 74 HOH HOH . 
G 4 HOH A 24 324 17 HOH HOH . 
G 4 HOH A 25 325 219 HOH HOH . 
G 4 HOH A 26 326 33 HOH HOH . 
G 4 HOH A 27 327 255 HOH HOH . 
G 4 HOH A 28 328 78 HOH HOH . 
G 4 HOH A 29 329 98 HOH HOH . 
G 4 HOH A 30 330 60 HOH HOH . 
G 4 HOH A 31 331 79 HOH HOH . 
G 4 HOH A 32 332 235 HOH HOH . 
G 4 HOH A 33 333 6 HOH HOH . 
G 4 HOH A 34 334 226 HOH HOH . 
G 4 HOH A 35 335 26 HOH HOH . 
G 4 HOH A 36 336 50 HOH HOH . 
G 4 HOH A 37 337 218 HOH HOH . 
G 4 HOH A 38 338 240 HOH HOH . 
G 4 HOH A 39 339 223 HOH HOH . 
G 4 HOH A 40 340 239 HOH HOH . 
G 4 HOH A 41 341 54 HOH HOH . 
G 4 HOH A 42 342 204 HOH HOH . 
G 4 HOH A 43 343 40 HOH HOH . 
G 4 HOH A 44 344 94 HOH HOH . 
G 4 HOH A 45 345 234 HOH HOH . 
G 4 HOH A 46 346 64 HOH HOH . 
G 4 HOH A 47 347 244 HOH HOH . 
G 4 HOH A 48 348 44 HOH HOH . 
G 4 HOH A 49 349 36 HOH HOH . 
G 4 HOH A 50 350 37 HOH HOH . 
G 4 HOH A 51 351 247 HOH HOH . 
G 4 HOH A 52 352 230 HOH HOH . 
G 4 HOH A 53 353 246 HOH HOH . 
G 4 HOH A 54 354 248 HOH HOH . 
G 4 HOH A 55 355 249 HOH HOH . 
G 4 HOH A 56 356 225 HOH HOH . 
G 4 HOH A 57 357 243 HOH HOH . 
G 4 HOH A 58 358 99 HOH HOH . 
G 4 HOH A 59 359 196 HOH HOH . 
G 4 HOH A 60 360 202 HOH HOH . 
H 4 HOH B 1 301 224 HOH HOH . 
H 4 HOH B 2 302 232 HOH HOH . 
H 4 HOH B 3 303 217 HOH HOH . 
H 4 HOH B 4 304 1 HOH HOH . 
H 4 HOH B 5 305 3 HOH HOH . 
H 4 HOH B 6 306 214 HOH HOH . 
H 4 HOH B 7 307 231 HOH HOH . 
H 4 HOH B 8 308 245 HOH HOH . 
H 4 HOH B 9 309 251 HOH HOH . 
H 4 HOH B 10 310 184 HOH HOH . 
H 4 HOH B 11 311 109 HOH HOH . 
H 4 HOH B 12 312 221 HOH HOH . 
H 4 HOH B 13 313 70 HOH HOH . 
H 4 HOH B 14 314 213 HOH HOH . 
H 4 HOH B 15 315 2 HOH HOH . 
H 4 HOH B 16 316 81 HOH HOH . 
H 4 HOH B 17 317 32 HOH HOH . 
H 4 HOH B 18 318 48 HOH HOH . 
H 4 HOH B 19 319 208 HOH HOH . 
H 4 HOH B 20 320 233 HOH HOH . 
H 4 HOH B 21 321 238 HOH HOH . 
H 4 HOH B 22 322 39 HOH HOH . 
H 4 HOH B 23 323 215 HOH HOH . 
H 4 HOH B 24 324 220 HOH HOH . 
H 4 HOH B 25 325 34 HOH HOH . 
H 4 HOH B 26 326 102 HOH HOH . 
H 4 HOH B 27 327 227 HOH HOH . 
H 4 HOH B 28 328 16 HOH HOH . 
H 4 HOH B 29 329 67 HOH HOH . 
H 4 HOH B 30 330 207 HOH HOH . 
H 4 HOH B 31 331 212 HOH HOH . 
H 4 HOH B 32 332 58 HOH HOH . 
H 4 HOH B 33 333 75 HOH HOH . 
H 4 HOH B 34 334 222 HOH HOH . 
H 4 HOH B 35 335 68 HOH HOH . 
H 4 HOH B 36 336 59 HOH HOH . 
H 4 HOH B 37 337 29 HOH HOH . 
H 4 HOH B 38 338 237 HOH HOH . 
H 4 HOH B 39 339 77 HOH HOH . 
H 4 HOH B 40 340 206 HOH HOH . 
H 4 HOH B 41 341 157 HOH HOH . 
H 4 HOH B 42 342 229 HOH HOH . 
H 4 HOH B 43 343 250 HOH HOH . 
I 4 HOH C 1 101 242 HOH HOH . 
I 4 HOH C 2 102 241 HOH HOH . 
I 4 HOH C 3 103 205 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -5.866 
_atom_site.Cartn_y               1.86 
_atom_site.Cartn_z               -17.374 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#