data_6JFC # _model_server_result.job_id oZV8glATowyKM6_ELdMdqw _model_server_result.datetime_utc '2024-11-14 11:00:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6JFC # _exptl.entry_id 6JFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JFC _cell.length_a 44.02 _cell.length_b 122.634 _cell.length_c 148.142 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 100 A CYS 103 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A NE2 HIS 142 A HIS 145 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 A NE2 HIS 146 A HIS 149 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 C O2 BB2 . A BB2 201 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc5 B SG CYS 100 B CYS 103 1_555 F NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 B NE2 HIS 142 B HIS 145 1_555 F NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 B NE2 HIS 146 B HIS 149 1_555 F NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 E O2 BB2 . B BB2 201 1_555 F NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JFC _atom_sites.fract_transf_matrix[1][1] 0.022717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BB2 A 1 201 1 BB2 BB2 . D 3 NI A 1 202 1 NI NI . E 2 BB2 B 1 201 2 BB2 BB2 . F 3 NI B 1 202 2 NI NI . G 4 HOH A 1 301 47 HOH HOH . G 4 HOH A 2 302 21 HOH HOH . G 4 HOH A 3 303 6 HOH HOH . G 4 HOH A 4 304 20 HOH HOH . G 4 HOH A 5 305 44 HOH HOH . G 4 HOH A 6 306 3 HOH HOH . G 4 HOH A 7 307 33 HOH HOH . G 4 HOH A 8 308 22 HOH HOH . G 4 HOH A 9 309 10 HOH HOH . G 4 HOH A 10 310 51 HOH HOH . G 4 HOH A 11 311 16 HOH HOH . G 4 HOH A 12 312 35 HOH HOH . G 4 HOH A 13 313 19 HOH HOH . G 4 HOH A 14 314 41 HOH HOH . G 4 HOH A 15 315 30 HOH HOH . G 4 HOH A 16 316 55 HOH HOH . G 4 HOH A 17 317 14 HOH HOH . G 4 HOH A 18 318 38 HOH HOH . G 4 HOH A 19 319 9 HOH HOH . G 4 HOH A 20 320 48 HOH HOH . G 4 HOH A 21 321 50 HOH HOH . G 4 HOH A 22 322 34 HOH HOH . G 4 HOH A 23 323 8 HOH HOH . G 4 HOH A 24 324 29 HOH HOH . G 4 HOH A 25 325 1 HOH HOH . H 4 HOH B 1 301 17 HOH HOH . H 4 HOH B 2 302 24 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 36 HOH HOH . H 4 HOH B 5 305 13 HOH HOH . H 4 HOH B 6 306 7 HOH HOH . H 4 HOH B 7 307 27 HOH HOH . H 4 HOH B 8 308 31 HOH HOH . H 4 HOH B 9 309 12 HOH HOH . H 4 HOH B 10 310 11 HOH HOH . H 4 HOH B 11 311 28 HOH HOH . H 4 HOH B 12 312 15 HOH HOH . H 4 HOH B 13 313 49 HOH HOH . H 4 HOH B 14 314 2 HOH HOH . H 4 HOH B 15 315 53 HOH HOH . H 4 HOH B 16 316 18 HOH HOH . H 4 HOH B 17 317 42 HOH HOH . H 4 HOH B 18 318 46 HOH HOH . H 4 HOH B 19 319 40 HOH HOH . H 4 HOH B 20 320 39 HOH HOH . H 4 HOH B 21 321 4 HOH HOH . H 4 HOH B 22 322 32 HOH HOH . H 4 HOH B 23 323 23 HOH HOH . H 4 HOH B 24 324 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.857 _atom_site.Cartn_y -34.078 _atom_site.Cartn_z -22.499 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #