data_6JFF # _model_server_result.job_id pdRbNxtICYeEifHPOiQ67w _model_server_result.datetime_utc '2024-11-16 10:11:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6JFF # _exptl.entry_id 6JFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JFF _cell.length_a 44.682 _cell.length_b 121.818 _cell.length_c 146.314 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 22 A GLU 25 1_555 E NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc2 A OE1 GLU 28 A GLU 31 1_555 E NI NI . A NI 203 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc3 A OE2 GLU 28 A GLU 31 1_555 E NI NI . A NI 203 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc4 A SG CYS 100 A CYS 103 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 A NE2 HIS 142 A HIS 145 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 A NE2 HIS 146 A HIS 149 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 C NI NI . A NI 201 1_555 H O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 B SG CYS 100 B CYS 103 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc9 B NE2 HIS 142 B HIS 145 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc10 B NE2 HIS 146 B HIS 149 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JFF _atom_sites.fract_transf_matrix[1][1] 0.02238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 201 2 NI NI . D 2 NI A 1 202 3 NI NI . E 2 NI A 1 203 4 NI NI . F 2 NI B 1 201 1 NI NI . G 3 K3U B 1 202 1 K3U K3U . H 4 HOH A 1 301 11 HOH HOH . H 4 HOH A 2 302 38 HOH HOH . H 4 HOH A 3 303 192 HOH HOH . H 4 HOH A 4 304 24 HOH HOH . H 4 HOH A 5 305 87 HOH HOH . H 4 HOH A 6 306 163 HOH HOH . H 4 HOH A 7 307 5 HOH HOH . H 4 HOH A 8 308 100 HOH HOH . H 4 HOH A 9 309 6 HOH HOH . H 4 HOH A 10 310 31 HOH HOH . H 4 HOH A 11 311 41 HOH HOH . H 4 HOH A 12 312 139 HOH HOH . H 4 HOH A 13 313 16 HOH HOH . H 4 HOH A 14 314 7 HOH HOH . H 4 HOH A 15 315 191 HOH HOH . H 4 HOH A 16 316 181 HOH HOH . H 4 HOH A 17 317 104 HOH HOH . H 4 HOH A 18 318 29 HOH HOH . H 4 HOH A 19 319 171 HOH HOH . H 4 HOH A 20 320 113 HOH HOH . H 4 HOH A 21 321 23 HOH HOH . H 4 HOH A 22 322 179 HOH HOH . H 4 HOH A 23 323 53 HOH HOH . H 4 HOH A 24 324 116 HOH HOH . H 4 HOH A 25 325 4 HOH HOH . H 4 HOH A 26 326 44 HOH HOH . H 4 HOH A 27 327 46 HOH HOH . H 4 HOH A 28 328 35 HOH HOH . H 4 HOH A 29 329 25 HOH HOH . H 4 HOH A 30 330 120 HOH HOH . H 4 HOH A 31 331 164 HOH HOH . H 4 HOH A 32 332 98 HOH HOH . H 4 HOH A 33 333 10 HOH HOH . H 4 HOH A 34 334 49 HOH HOH . H 4 HOH A 35 335 33 HOH HOH . H 4 HOH A 36 336 45 HOH HOH . H 4 HOH A 37 337 178 HOH HOH . H 4 HOH A 38 338 54 HOH HOH . H 4 HOH A 39 339 71 HOH HOH . H 4 HOH A 40 340 34 HOH HOH . H 4 HOH A 41 341 47 HOH HOH . H 4 HOH A 42 342 51 HOH HOH . H 4 HOH A 43 343 188 HOH HOH . H 4 HOH A 44 344 107 HOH HOH . H 4 HOH A 45 345 27 HOH HOH . H 4 HOH A 46 346 37 HOH HOH . H 4 HOH A 47 347 60 HOH HOH . H 4 HOH A 48 348 50 HOH HOH . H 4 HOH A 49 349 182 HOH HOH . H 4 HOH A 50 350 32 HOH HOH . H 4 HOH A 51 351 30 HOH HOH . H 4 HOH A 52 352 168 HOH HOH . H 4 HOH A 53 353 20 HOH HOH . H 4 HOH A 54 354 180 HOH HOH . H 4 HOH A 55 355 56 HOH HOH . H 4 HOH A 56 356 165 HOH HOH . I 4 HOH B 1 301 39 HOH HOH . I 4 HOH B 2 302 21 HOH HOH . I 4 HOH B 3 303 17 HOH HOH . I 4 HOH B 4 304 63 HOH HOH . I 4 HOH B 5 305 22 HOH HOH . I 4 HOH B 6 306 88 HOH HOH . I 4 HOH B 7 307 68 HOH HOH . I 4 HOH B 8 308 187 HOH HOH . I 4 HOH B 9 309 132 HOH HOH . I 4 HOH B 10 310 190 HOH HOH . I 4 HOH B 11 311 177 HOH HOH . I 4 HOH B 12 312 93 HOH HOH . I 4 HOH B 13 313 133 HOH HOH . I 4 HOH B 14 314 144 HOH HOH . I 4 HOH B 15 315 184 HOH HOH . I 4 HOH B 16 316 176 HOH HOH . I 4 HOH B 17 317 3 HOH HOH . I 4 HOH B 18 318 52 HOH HOH . I 4 HOH B 19 319 135 HOH HOH . I 4 HOH B 20 320 42 HOH HOH . I 4 HOH B 21 321 150 HOH HOH . I 4 HOH B 22 322 36 HOH HOH . I 4 HOH B 23 323 76 HOH HOH . I 4 HOH B 24 324 65 HOH HOH . I 4 HOH B 25 325 57 HOH HOH . I 4 HOH B 26 326 2 HOH HOH . I 4 HOH B 27 327 59 HOH HOH . I 4 HOH B 28 328 14 HOH HOH . I 4 HOH B 29 329 189 HOH HOH . I 4 HOH B 30 330 48 HOH HOH . I 4 HOH B 31 331 13 HOH HOH . I 4 HOH B 32 332 26 HOH HOH . I 4 HOH B 33 333 55 HOH HOH . I 4 HOH B 34 334 124 HOH HOH . I 4 HOH B 35 335 43 HOH HOH . I 4 HOH B 36 336 61 HOH HOH . I 4 HOH B 37 337 90 HOH HOH . I 4 HOH B 38 338 12 HOH HOH . I 4 HOH B 39 339 170 HOH HOH . I 4 HOH B 40 340 126 HOH HOH . I 4 HOH B 41 341 162 HOH HOH . I 4 HOH B 42 342 19 HOH HOH . I 4 HOH B 43 343 82 HOH HOH . I 4 HOH B 44 344 174 HOH HOH . I 4 HOH B 45 345 175 HOH HOH . I 4 HOH B 46 346 169 HOH HOH . I 4 HOH B 47 347 173 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.525 _atom_site.Cartn_y -2.339 _atom_site.Cartn_z -17.322 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #