data_6JFF # _model_server_result.job_id W5ovO20QMC-XdhDuRhTJCg _model_server_result.datetime_utc '2024-11-16 10:04:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 6JFF # _exptl.entry_id 6JFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JFF _cell.length_a 44.682 _cell.length_b 121.818 _cell.length_c 146.314 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 22 A GLU 25 1_555 E NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc2 A OE1 GLU 28 A GLU 31 1_555 E NI NI . A NI 203 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc3 A OE2 GLU 28 A GLU 31 1_555 E NI NI . A NI 203 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc4 A SG CYS 100 A CYS 103 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 A NE2 HIS 142 A HIS 145 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 A NE2 HIS 146 A HIS 149 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 C NI NI . A NI 201 1_555 H O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 B SG CYS 100 B CYS 103 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc9 B NE2 HIS 142 B HIS 145 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc10 B NE2 HIS 146 B HIS 149 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'C19 H17 F3 O2 S' _chem_comp.formula_weight 366.397 _chem_comp.id K3U _chem_comp.mon_nstd_flag . _chem_comp.name 'S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C12 K3U sing 173 n n F C12 K3U sing 174 n n C12 F1 K3U sing 175 n n C12 C11 K3U sing 176 n n C11 C3 K3U sing 177 n n C3 C4 K3U sing 178 n n C3 C2 K3U sing 179 n n C4 C5 K3U sing 180 n n C2 O1 K3U doub 181 n n C2 S K3U sing 182 n n C6 C5 K3U doub 183 n y C6 C7 K3U sing 184 n y S C1 K3U sing 185 n n C5 C10 K3U sing 186 n y C7 C8 K3U doub 187 n y C10 C9 K3U doub 188 n y C1 C K3U sing 189 n n O C K3U doub 190 n n C8 C9 K3U sing 191 n y C C13 K3U sing 192 n n C13 C18 K3U doub 193 n y C13 C14 K3U sing 194 n y C18 C17 K3U sing 195 n y C14 C15 K3U doub 196 n y C17 C16 K3U doub 197 n y C15 C16 K3U sing 198 n y C14 H1 K3U sing 199 n n C15 H2 K3U sing 200 n n C16 H3 K3U sing 201 n n C17 H4 K3U sing 202 n n C18 H5 K3U sing 203 n n C1 H6 K3U sing 204 n n C1 H7 K3U sing 205 n n C3 H8 K3U sing 206 n n C11 H9 K3U sing 207 n n C11 H10 K3U sing 208 n n C4 H11 K3U sing 209 n n C4 H12 K3U sing 210 n n C6 H13 K3U sing 211 n n C7 H14 K3U sing 212 n n C8 H15 K3U sing 213 n n C9 H16 K3U sing 214 n n C10 H17 K3U sing 215 n n # _atom_sites.entry_id 6JFF _atom_sites.fract_transf_matrix[1][1] 0.02238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 201 2 NI NI . D 2 NI A 1 202 3 NI NI . E 2 NI A 1 203 4 NI NI . F 2 NI B 1 201 1 NI NI . G 3 K3U B 1 202 1 K3U K3U . H 4 HOH A 1 301 11 HOH HOH . H 4 HOH A 2 302 38 HOH HOH . H 4 HOH A 3 303 192 HOH HOH . H 4 HOH A 4 304 24 HOH HOH . H 4 HOH A 5 305 87 HOH HOH . H 4 HOH A 6 306 163 HOH HOH . H 4 HOH A 7 307 5 HOH HOH . H 4 HOH A 8 308 100 HOH HOH . H 4 HOH A 9 309 6 HOH HOH . H 4 HOH A 10 310 31 HOH HOH . H 4 HOH A 11 311 41 HOH HOH . H 4 HOH A 12 312 139 HOH HOH . H 4 HOH A 13 313 16 HOH HOH . H 4 HOH A 14 314 7 HOH HOH . H 4 HOH A 15 315 191 HOH HOH . H 4 HOH A 16 316 181 HOH HOH . H 4 HOH A 17 317 104 HOH HOH . H 4 HOH A 18 318 29 HOH HOH . H 4 HOH A 19 319 171 HOH HOH . H 4 HOH A 20 320 113 HOH HOH . H 4 HOH A 21 321 23 HOH HOH . H 4 HOH A 22 322 179 HOH HOH . H 4 HOH A 23 323 53 HOH HOH . H 4 HOH A 24 324 116 HOH HOH . H 4 HOH A 25 325 4 HOH HOH . H 4 HOH A 26 326 44 HOH HOH . H 4 HOH A 27 327 46 HOH HOH . H 4 HOH A 28 328 35 HOH HOH . H 4 HOH A 29 329 25 HOH HOH . H 4 HOH A 30 330 120 HOH HOH . H 4 HOH A 31 331 164 HOH HOH . H 4 HOH A 32 332 98 HOH HOH . H 4 HOH A 33 333 10 HOH HOH . H 4 HOH A 34 334 49 HOH HOH . H 4 HOH A 35 335 33 HOH HOH . H 4 HOH A 36 336 45 HOH HOH . H 4 HOH A 37 337 178 HOH HOH . H 4 HOH A 38 338 54 HOH HOH . H 4 HOH A 39 339 71 HOH HOH . H 4 HOH A 40 340 34 HOH HOH . H 4 HOH A 41 341 47 HOH HOH . H 4 HOH A 42 342 51 HOH HOH . H 4 HOH A 43 343 188 HOH HOH . H 4 HOH A 44 344 107 HOH HOH . H 4 HOH A 45 345 27 HOH HOH . H 4 HOH A 46 346 37 HOH HOH . H 4 HOH A 47 347 60 HOH HOH . H 4 HOH A 48 348 50 HOH HOH . H 4 HOH A 49 349 182 HOH HOH . H 4 HOH A 50 350 32 HOH HOH . H 4 HOH A 51 351 30 HOH HOH . H 4 HOH A 52 352 168 HOH HOH . H 4 HOH A 53 353 20 HOH HOH . H 4 HOH A 54 354 180 HOH HOH . H 4 HOH A 55 355 56 HOH HOH . H 4 HOH A 56 356 165 HOH HOH . I 4 HOH B 1 301 39 HOH HOH . I 4 HOH B 2 302 21 HOH HOH . I 4 HOH B 3 303 17 HOH HOH . I 4 HOH B 4 304 63 HOH HOH . I 4 HOH B 5 305 22 HOH HOH . I 4 HOH B 6 306 88 HOH HOH . I 4 HOH B 7 307 68 HOH HOH . I 4 HOH B 8 308 187 HOH HOH . I 4 HOH B 9 309 132 HOH HOH . I 4 HOH B 10 310 190 HOH HOH . I 4 HOH B 11 311 177 HOH HOH . I 4 HOH B 12 312 93 HOH HOH . I 4 HOH B 13 313 133 HOH HOH . I 4 HOH B 14 314 144 HOH HOH . I 4 HOH B 15 315 184 HOH HOH . I 4 HOH B 16 316 176 HOH HOH . I 4 HOH B 17 317 3 HOH HOH . I 4 HOH B 18 318 52 HOH HOH . I 4 HOH B 19 319 135 HOH HOH . I 4 HOH B 20 320 42 HOH HOH . I 4 HOH B 21 321 150 HOH HOH . I 4 HOH B 22 322 36 HOH HOH . I 4 HOH B 23 323 76 HOH HOH . I 4 HOH B 24 324 65 HOH HOH . I 4 HOH B 25 325 57 HOH HOH . I 4 HOH B 26 326 2 HOH HOH . I 4 HOH B 27 327 59 HOH HOH . I 4 HOH B 28 328 14 HOH HOH . I 4 HOH B 29 329 189 HOH HOH . I 4 HOH B 30 330 48 HOH HOH . I 4 HOH B 31 331 13 HOH HOH . I 4 HOH B 32 332 26 HOH HOH . I 4 HOH B 33 333 55 HOH HOH . I 4 HOH B 34 334 124 HOH HOH . I 4 HOH B 35 335 43 HOH HOH . I 4 HOH B 36 336 61 HOH HOH . I 4 HOH B 37 337 90 HOH HOH . I 4 HOH B 38 338 12 HOH HOH . I 4 HOH B 39 339 170 HOH HOH . I 4 HOH B 40 340 126 HOH HOH . I 4 HOH B 41 341 162 HOH HOH . I 4 HOH B 42 342 19 HOH HOH . I 4 HOH B 43 343 82 HOH HOH . I 4 HOH B 44 344 174 HOH HOH . I 4 HOH B 45 345 175 HOH HOH . I 4 HOH B 46 346 169 HOH HOH . I 4 HOH B 47 347 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O K3U . . . G 3 26.126 -0.463 -26.912 1 101.31 ? O K3U 202 B 1 HETATM 2 C C K3U . . . G 3 27.285 -0.849 -26.785 1 109.63 ? C K3U 202 B 1 HETATM 3 C C13 K3U . . . G 3 28.121 -1.061 -28.06 1 108.45 ? C13 K3U 202 B 1 HETATM 4 C C14 K3U . . . G 3 29.503 -1.334 -28.019 1 106.26 ? C14 K3U 202 B 1 HETATM 5 C C15 K3U . . . G 3 30.238 -1.52 -29.206 1 111.56 ? C15 K3U 202 B 1 HETATM 6 C C16 K3U . . . G 3 29.617 -1.434 -30.461 1 108.71 ? C16 K3U 202 B 1 HETATM 7 C C17 K3U . . . G 3 28.248 -1.161 -30.524 1 104.87 ? C17 K3U 202 B 1 HETATM 8 C C18 K3U . . . G 3 27.516 -0.972 -29.34 1 108.99 ? C18 K3U 202 B 1 HETATM 9 C C1 K3U . . . G 3 27.828 -1.068 -25.358 1 106.33 ? C1 K3U 202 B 1 HETATM 10 S S K3U . . . G 3 26.612 -1.368 -24.082 1 114.77 ? S K3U 202 B 1 HETATM 11 C C2 K3U . . . G 3 26.479 -0.229 -22.82 1 100.43 ? C2 K3U 202 B 1 HETATM 12 O O1 K3U . . . G 3 26.654 0.932 -23.141 1 99.52 ? O1 K3U 202 B 1 HETATM 13 C C3 K3U . . . G 3 26.22 -0.551 -21.329 1 95.82 ? C3 K3U 202 B 1 HETATM 14 C C11 K3U . . . G 3 27.203 0.305 -20.466 1 95.41 ? C11 K3U 202 B 1 HETATM 15 C C12 K3U . . . G 3 27.97 -0.379 -19.309 1 98.87 ? C12 K3U 202 B 1 HETATM 16 F F1 K3U . . . G 3 27.737 -1.675 -19.348 1 120.7 ? F1 K3U 202 B 1 HETATM 17 F F K3U . . . G 3 27.686 0.082 -18.037 1 59.35 ? F K3U 202 B 1 HETATM 18 F F2 K3U . . . G 3 29.256 -0.284 -19.636 1 98.88 ? F2 K3U 202 B 1 HETATM 19 C C4 K3U . . . G 3 24.838 -0.278 -20.668 1 84.41 ? C4 K3U 202 B 1 HETATM 20 C C5 K3U . . . G 3 23.597 -1.099 -20.995 1 83.18 ? C5 K3U 202 B 1 HETATM 21 C C6 K3U . . . G 3 23.44 -1.935 -22.115 1 85.88 ? C6 K3U 202 B 1 HETATM 22 C C7 K3U . . . G 3 22.251 -2.621 -22.337 1 67.67 ? C7 K3U 202 B 1 HETATM 23 C C8 K3U . . . G 3 21.199 -2.476 -21.447 1 65.7 ? C8 K3U 202 B 1 HETATM 24 C C9 K3U . . . G 3 21.325 -1.662 -20.35 1 64.07 ? C9 K3U 202 B 1 HETATM 25 C C10 K3U . . . G 3 22.516 -0.969 -20.12 1 76.38 ? C10 K3U 202 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #