data_6JFK # _model_server_result.job_id FwO5wGLCxCDnI-OwVofymA _model_server_result.datetime_utc '2024-11-24 01:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6JFK # _exptl.entry_id 6JFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JFK _cell.length_a 49.624 _cell.length_b 49.624 _cell.length_c 388.065 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6JFK _atom_sites.fract_transf_matrix[1][1] 0.020152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 801 1 GDP GDP . C 3 CIT A 1 802 1 CIT CIT . D 4 GOL A 1 803 1 GOL GOL . E 4 GOL A 1 804 2 GOL GOL . F 4 GOL A 1 805 3 GOL GOL . G 4 GOL A 1 806 4 GOL GOL . H 5 HOH A 1 901 91 HOH HOH . H 5 HOH A 2 902 56 HOH HOH . H 5 HOH A 3 903 64 HOH HOH . H 5 HOH A 4 904 69 HOH HOH . H 5 HOH A 5 905 182 HOH HOH . H 5 HOH A 6 906 85 HOH HOH . H 5 HOH A 7 907 99 HOH HOH . H 5 HOH A 8 908 134 HOH HOH . H 5 HOH A 9 909 59 HOH HOH . H 5 HOH A 10 910 107 HOH HOH . H 5 HOH A 11 911 6 HOH HOH . H 5 HOH A 12 912 173 HOH HOH . H 5 HOH A 13 913 11 HOH HOH . H 5 HOH A 14 914 104 HOH HOH . H 5 HOH A 15 915 14 HOH HOH . H 5 HOH A 16 916 70 HOH HOH . H 5 HOH A 17 917 54 HOH HOH . H 5 HOH A 18 918 31 HOH HOH . H 5 HOH A 19 919 78 HOH HOH . H 5 HOH A 20 920 100 HOH HOH . H 5 HOH A 21 921 79 HOH HOH . H 5 HOH A 22 922 16 HOH HOH . H 5 HOH A 23 923 84 HOH HOH . H 5 HOH A 24 924 46 HOH HOH . H 5 HOH A 25 925 7 HOH HOH . H 5 HOH A 26 926 33 HOH HOH . H 5 HOH A 27 927 123 HOH HOH . H 5 HOH A 28 928 22 HOH HOH . H 5 HOH A 29 929 74 HOH HOH . H 5 HOH A 30 930 136 HOH HOH . H 5 HOH A 31 931 58 HOH HOH . H 5 HOH A 32 932 30 HOH HOH . H 5 HOH A 33 933 10 HOH HOH . H 5 HOH A 34 934 124 HOH HOH . H 5 HOH A 35 935 95 HOH HOH . H 5 HOH A 36 936 45 HOH HOH . H 5 HOH A 37 937 44 HOH HOH . H 5 HOH A 38 938 147 HOH HOH . H 5 HOH A 39 939 61 HOH HOH . H 5 HOH A 40 940 24 HOH HOH . H 5 HOH A 41 941 160 HOH HOH . H 5 HOH A 42 942 60 HOH HOH . H 5 HOH A 43 943 48 HOH HOH . H 5 HOH A 44 944 3 HOH HOH . H 5 HOH A 45 945 122 HOH HOH . H 5 HOH A 46 946 4 HOH HOH . H 5 HOH A 47 947 170 HOH HOH . H 5 HOH A 48 948 12 HOH HOH . H 5 HOH A 49 949 55 HOH HOH . H 5 HOH A 50 950 149 HOH HOH . H 5 HOH A 51 951 51 HOH HOH . H 5 HOH A 52 952 116 HOH HOH . H 5 HOH A 53 953 80 HOH HOH . H 5 HOH A 54 954 26 HOH HOH . H 5 HOH A 55 955 25 HOH HOH . H 5 HOH A 56 956 152 HOH HOH . H 5 HOH A 57 957 62 HOH HOH . H 5 HOH A 58 958 57 HOH HOH . H 5 HOH A 59 959 35 HOH HOH . H 5 HOH A 60 960 15 HOH HOH . H 5 HOH A 61 961 94 HOH HOH . H 5 HOH A 62 962 101 HOH HOH . H 5 HOH A 63 963 17 HOH HOH . H 5 HOH A 64 964 38 HOH HOH . H 5 HOH A 65 965 72 HOH HOH . H 5 HOH A 66 966 43 HOH HOH . H 5 HOH A 67 967 87 HOH HOH . H 5 HOH A 68 968 169 HOH HOH . H 5 HOH A 69 969 63 HOH HOH . H 5 HOH A 70 970 34 HOH HOH . H 5 HOH A 71 971 71 HOH HOH . H 5 HOH A 72 972 120 HOH HOH . H 5 HOH A 73 973 41 HOH HOH . H 5 HOH A 74 974 20 HOH HOH . H 5 HOH A 75 975 13 HOH HOH . H 5 HOH A 76 976 67 HOH HOH . H 5 HOH A 77 977 68 HOH HOH . H 5 HOH A 78 978 50 HOH HOH . H 5 HOH A 79 979 5 HOH HOH . H 5 HOH A 80 980 49 HOH HOH . H 5 HOH A 81 981 110 HOH HOH . H 5 HOH A 82 982 93 HOH HOH . H 5 HOH A 83 983 82 HOH HOH . H 5 HOH A 84 984 90 HOH HOH . H 5 HOH A 85 985 129 HOH HOH . H 5 HOH A 86 986 19 HOH HOH . H 5 HOH A 87 987 23 HOH HOH . H 5 HOH A 88 988 77 HOH HOH . H 5 HOH A 89 989 153 HOH HOH . H 5 HOH A 90 990 28 HOH HOH . H 5 HOH A 91 991 37 HOH HOH . H 5 HOH A 92 992 18 HOH HOH . H 5 HOH A 93 993 119 HOH HOH . H 5 HOH A 94 994 156 HOH HOH . H 5 HOH A 95 995 21 HOH HOH . H 5 HOH A 96 996 36 HOH HOH . H 5 HOH A 97 997 111 HOH HOH . H 5 HOH A 98 998 112 HOH HOH . H 5 HOH A 99 999 86 HOH HOH . H 5 HOH A 100 1000 102 HOH HOH . H 5 HOH A 101 1001 53 HOH HOH . H 5 HOH A 102 1002 115 HOH HOH . H 5 HOH A 103 1003 113 HOH HOH . H 5 HOH A 104 1004 180 HOH HOH . H 5 HOH A 105 1005 96 HOH HOH . H 5 HOH A 106 1006 133 HOH HOH . H 5 HOH A 107 1007 66 HOH HOH . H 5 HOH A 108 1008 40 HOH HOH . H 5 HOH A 109 1009 109 HOH HOH . H 5 HOH A 110 1010 139 HOH HOH . H 5 HOH A 111 1011 76 HOH HOH . H 5 HOH A 112 1012 29 HOH HOH . H 5 HOH A 113 1013 108 HOH HOH . H 5 HOH A 114 1014 145 HOH HOH . H 5 HOH A 115 1015 73 HOH HOH . H 5 HOH A 116 1016 39 HOH HOH . H 5 HOH A 117 1017 98 HOH HOH . H 5 HOH A 118 1018 121 HOH HOH . H 5 HOH A 119 1019 9 HOH HOH . H 5 HOH A 120 1020 42 HOH HOH . H 5 HOH A 121 1021 2 HOH HOH . H 5 HOH A 122 1022 154 HOH HOH . H 5 HOH A 123 1023 159 HOH HOH . H 5 HOH A 124 1024 89 HOH HOH . H 5 HOH A 125 1025 144 HOH HOH . H 5 HOH A 126 1026 27 HOH HOH . H 5 HOH A 127 1027 178 HOH HOH . H 5 HOH A 128 1028 163 HOH HOH . H 5 HOH A 129 1029 52 HOH HOH . H 5 HOH A 130 1030 146 HOH HOH . H 5 HOH A 131 1031 181 HOH HOH . H 5 HOH A 132 1032 138 HOH HOH . H 5 HOH A 133 1033 179 HOH HOH . H 5 HOH A 134 1034 75 HOH HOH . H 5 HOH A 135 1035 92 HOH HOH . H 5 HOH A 136 1036 167 HOH HOH . H 5 HOH A 137 1037 171 HOH HOH . H 5 HOH A 138 1038 157 HOH HOH . H 5 HOH A 139 1039 103 HOH HOH . H 5 HOH A 140 1040 83 HOH HOH . H 5 HOH A 141 1041 177 HOH HOH . H 5 HOH A 142 1042 155 HOH HOH . H 5 HOH A 143 1043 32 HOH HOH . H 5 HOH A 144 1044 88 HOH HOH . H 5 HOH A 145 1045 128 HOH HOH . H 5 HOH A 146 1046 141 HOH HOH . H 5 HOH A 147 1047 65 HOH HOH . H 5 HOH A 148 1048 97 HOH HOH . H 5 HOH A 149 1049 143 HOH HOH . H 5 HOH A 150 1050 47 HOH HOH . H 5 HOH A 151 1051 164 HOH HOH . H 5 HOH A 152 1052 131 HOH HOH . H 5 HOH A 153 1053 132 HOH HOH . H 5 HOH A 154 1054 166 HOH HOH . H 5 HOH A 155 1055 126 HOH HOH . H 5 HOH A 156 1056 174 HOH HOH . H 5 HOH A 157 1057 135 HOH HOH . H 5 HOH A 158 1058 165 HOH HOH . H 5 HOH A 159 1059 105 HOH HOH . H 5 HOH A 160 1060 176 HOH HOH . H 5 HOH A 161 1061 1 HOH HOH . H 5 HOH A 162 1062 8 HOH HOH . H 5 HOH A 163 1063 118 HOH HOH . H 5 HOH A 164 1064 125 HOH HOH . H 5 HOH A 165 1065 114 HOH HOH . H 5 HOH A 166 1066 172 HOH HOH . H 5 HOH A 167 1067 162 HOH HOH . H 5 HOH A 168 1068 158 HOH HOH . H 5 HOH A 169 1069 81 HOH HOH . H 5 HOH A 170 1070 175 HOH HOH . H 5 HOH A 171 1071 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 -24.993 21.688 -4.845 1 41.65 ? C1 CIT 802 A 1 HETATM 2 O O1 CIT . . . C 3 -26.215 21.518 -4.642 1 35.59 ? O1 CIT 802 A 1 HETATM 3 O O2 CIT . . . C 3 -24.318 22.29 -3.973 1 41.69 ? O2 CIT 802 A 1 HETATM 4 C C2 CIT . . . C 3 -24.39 21.167 -6.131 1 49.74 ? C2 CIT 802 A 1 HETATM 5 C C3 CIT . . . C 3 -22.861 21.143 -6.182 1 64.25 ? C3 CIT 802 A 1 HETATM 6 O O7 CIT . . . C 3 -22.562 20.505 -7.451 1 70.33 ? O7 CIT 802 A 1 HETATM 7 C C4 CIT . . . C 3 -22.178 22.508 -6.16 1 71.49 ? C4 CIT 802 A 1 HETATM 8 C C5 CIT . . . C 3 -20.774 22.299 -6.7 1 79.43 ? C5 CIT 802 A 1 HETATM 9 O O3 CIT . . . C 3 -20.56 21.509 -7.651 1 72.71 ? O3 CIT 802 A 1 HETATM 10 O O4 CIT . . . C 3 -19.8 22.893 -6.188 1 89.85 ? O4 CIT 802 A 1 HETATM 11 C C6 CIT . . . C 3 -22.224 20.331 -5.052 1 54.21 ? C6 CIT 802 A 1 HETATM 12 O O5 CIT . . . C 3 -21.94 19.13 -5.223 1 41.29 ? O5 CIT 802 A 1 HETATM 13 O O6 CIT . . . C 3 -21.947 20.869 -3.954 1 56.83 ? O6 CIT 802 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #