data_6JFL # _model_server_result.job_id z95Lq_nrwYisQv3S2k3N1w _model_server_result.datetime_utc '2024-11-27 19:07:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jfl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 6JFL # _exptl.entry_id 6JFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.27 _cell.angle_gamma 90 _cell.entry_id 6JFL _cell.length_a 84.482 _cell.length_b 128.424 _cell.length_c 91.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G 1 1 B,H 2 1 C,F,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6JFL _atom_sites.fract_transf_matrix[1][1] 0.011837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003455 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 801 801 GOL GOL . F 3 CA C 1 801 1 CA CA . G 4 HOH A 1 901 30 HOH HOH . G 4 HOH A 2 902 8 HOH HOH . G 4 HOH A 3 903 2 HOH HOH . G 4 HOH A 4 904 22 HOH HOH . G 4 HOH A 5 905 28 HOH HOH . G 4 HOH A 6 906 118 HOH HOH . G 4 HOH A 7 907 92 HOH HOH . G 4 HOH A 8 908 93 HOH HOH . G 4 HOH A 9 909 37 HOH HOH . G 4 HOH A 10 910 7 HOH HOH . G 4 HOH A 11 911 117 HOH HOH . G 4 HOH A 12 912 23 HOH HOH . G 4 HOH A 13 913 90 HOH HOH . G 4 HOH A 14 914 35 HOH HOH . G 4 HOH A 15 915 89 HOH HOH . G 4 HOH A 16 916 36 HOH HOH . G 4 HOH A 17 917 127 HOH HOH . G 4 HOH A 18 918 95 HOH HOH . G 4 HOH A 19 919 15 HOH HOH . G 4 HOH A 20 920 133 HOH HOH . G 4 HOH A 21 921 24 HOH HOH . G 4 HOH A 22 922 82 HOH HOH . G 4 HOH A 23 923 116 HOH HOH . G 4 HOH A 24 924 84 HOH HOH . G 4 HOH A 25 925 86 HOH HOH . G 4 HOH A 26 926 107 HOH HOH . G 4 HOH A 27 927 85 HOH HOH . G 4 HOH A 28 928 119 HOH HOH . G 4 HOH A 29 929 113 HOH HOH . G 4 HOH A 30 930 106 HOH HOH . G 4 HOH A 31 931 32 HOH HOH . G 4 HOH A 32 932 120 HOH HOH . G 4 HOH A 33 933 131 HOH HOH . G 4 HOH A 34 934 96 HOH HOH . G 4 HOH A 35 935 33 HOH HOH . H 4 HOH B 1 801 45 HOH HOH . H 4 HOH B 2 802 42 HOH HOH . H 4 HOH B 3 803 13 HOH HOH . H 4 HOH B 4 804 70 HOH HOH . H 4 HOH B 5 805 110 HOH HOH . H 4 HOH B 6 806 108 HOH HOH . H 4 HOH B 7 807 50 HOH HOH . H 4 HOH B 8 808 109 HOH HOH . H 4 HOH B 9 809 44 HOH HOH . H 4 HOH B 10 810 43 HOH HOH . H 4 HOH B 11 811 10 HOH HOH . H 4 HOH B 12 812 129 HOH HOH . H 4 HOH B 13 813 21 HOH HOH . H 4 HOH B 14 814 9 HOH HOH . H 4 HOH B 15 815 130 HOH HOH . H 4 HOH B 16 816 48 HOH HOH . H 4 HOH B 17 817 88 HOH HOH . H 4 HOH B 18 818 122 HOH HOH . H 4 HOH B 19 819 52 HOH HOH . H 4 HOH B 20 820 123 HOH HOH . H 4 HOH B 21 821 47 HOH HOH . H 4 HOH B 22 822 54 HOH HOH . H 4 HOH B 23 823 100 HOH HOH . H 4 HOH B 24 824 72 HOH HOH . H 4 HOH B 25 825 12 HOH HOH . H 4 HOH B 26 826 19 HOH HOH . H 4 HOH B 27 827 16 HOH HOH . H 4 HOH B 28 828 111 HOH HOH . H 4 HOH B 29 829 20 HOH HOH . H 4 HOH B 30 830 49 HOH HOH . H 4 HOH B 31 831 74 HOH HOH . H 4 HOH B 32 832 115 HOH HOH . H 4 HOH B 33 833 125 HOH HOH . H 4 HOH B 34 834 46 HOH HOH . H 4 HOH B 35 835 68 HOH HOH . H 4 HOH B 36 836 105 HOH HOH . H 4 HOH B 37 837 69 HOH HOH . H 4 HOH B 38 838 67 HOH HOH . H 4 HOH B 39 839 104 HOH HOH . H 4 HOH B 40 840 53 HOH HOH . H 4 HOH B 41 841 124 HOH HOH . I 4 HOH C 1 901 76 HOH HOH . I 4 HOH C 2 902 34 HOH HOH . I 4 HOH C 3 903 17 HOH HOH . I 4 HOH C 4 904 29 HOH HOH . I 4 HOH C 5 905 81 HOH HOH . I 4 HOH C 6 906 3 HOH HOH . I 4 HOH C 7 907 135 HOH HOH . I 4 HOH C 8 908 78 HOH HOH . I 4 HOH C 9 909 98 HOH HOH . I 4 HOH C 10 910 65 HOH HOH . I 4 HOH C 11 911 25 HOH HOH . I 4 HOH C 12 912 126 HOH HOH . I 4 HOH C 13 913 91 HOH HOH . I 4 HOH C 14 914 99 HOH HOH . I 4 HOH C 15 915 79 HOH HOH . I 4 HOH C 16 916 27 HOH HOH . I 4 HOH C 17 917 66 HOH HOH . I 4 HOH C 18 918 103 HOH HOH . I 4 HOH C 19 919 80 HOH HOH . I 4 HOH C 20 920 26 HOH HOH . I 4 HOH C 21 921 83 HOH HOH . I 4 HOH C 22 922 31 HOH HOH . I 4 HOH C 23 923 112 HOH HOH . I 4 HOH C 24 924 94 HOH HOH . I 4 HOH C 25 925 77 HOH HOH . I 4 HOH C 26 926 75 HOH HOH . I 4 HOH C 27 927 63 HOH HOH . I 4 HOH C 28 928 87 HOH HOH . I 4 HOH C 29 929 64 HOH HOH . J 4 HOH D 1 801 1 HOH HOH . J 4 HOH D 2 802 39 HOH HOH . J 4 HOH D 3 803 101 HOH HOH . J 4 HOH D 4 804 71 HOH HOH . J 4 HOH D 5 805 128 HOH HOH . J 4 HOH D 6 806 4 HOH HOH . J 4 HOH D 7 807 41 HOH HOH . J 4 HOH D 8 808 59 HOH HOH . J 4 HOH D 9 809 6 HOH HOH . J 4 HOH D 10 810 40 HOH HOH . J 4 HOH D 11 811 38 HOH HOH . J 4 HOH D 12 812 60 HOH HOH . J 4 HOH D 13 813 61 HOH HOH . J 4 HOH D 14 814 58 HOH HOH . J 4 HOH D 15 815 73 HOH HOH . J 4 HOH D 16 816 132 HOH HOH . J 4 HOH D 17 817 57 HOH HOH . J 4 HOH D 18 818 55 HOH HOH . J 4 HOH D 19 819 62 HOH HOH . J 4 HOH D 20 820 18 HOH HOH . J 4 HOH D 21 821 134 HOH HOH . J 4 HOH D 22 822 14 HOH HOH . J 4 HOH D 23 823 114 HOH HOH . J 4 HOH D 24 824 11 HOH HOH . J 4 HOH D 25 825 121 HOH HOH . J 4 HOH D 26 826 102 HOH HOH . J 4 HOH D 27 827 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 49.984 -7.279 21.078 1 68.5 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . E 2 50.174 -8.016 22.271 1 51.75 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . E 2 50.794 -7.863 19.915 1 76.97 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . E 2 50.024 -7.827 18.724 1 71.12 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . E 2 52.084 -7.064 19.707 1 78.12 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . E 2 52.968 -7.805 18.886 1 75.08 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #