data_6JGM # _model_server_result.job_id 25f4u7vE2BJENaX6jik2fQ _model_server_result.datetime_utc '2024-11-26 11:14:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 6JGM # _exptl.entry_id 6JGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.523 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[6-(cyclohexylmethoxy)-7H-purin-2-yl]amino}-N,N-diethylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JGM _cell.length_a 53.491 _cell.length_b 72.01 _cell.length_c 72.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H30 N6 O2' _chem_comp.formula_weight 422.523 _chem_comp.id AQG _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[6-(cyclohexylmethoxy)-7H-purin-2-yl]amino}-N,N-diethylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N7 AQG sing 13 n y C8 N9 AQG doub 14 n y N7 C5 AQG sing 15 n y CAJ CAN AQG sing 16 n n CAJ CAI AQG sing 17 n n CAN CBD AQG sing 18 n n N9 C4 AQG sing 19 n y C5 C4 AQG doub 20 n y C5 C6 AQG sing 21 n y CAI CAK AQG sing 22 n n O6 C6 AQG sing 23 n n O6 CAP AQG sing 24 n n C4 N3 AQG sing 25 n y C6 N1 AQG doub 26 n y CBD CAP AQG sing 27 n n CBD CAO AQG sing 28 n n CAK CAO AQG sing 29 n n N3 C2 AQG doub 30 n y N1 C2 AQG sing 31 n y C2 N2 AQG sing 32 n n N2 CAX AQG sing 33 n n CAE CAX AQG doub 34 n y CAE CAG AQG sing 35 n y CAX CAD AQG sing 36 n y CAG CAY AQG doub 37 n y CAD CAF AQG doub 38 n y CAY CAF AQG sing 39 n y CAY CAW AQG sing 40 n n OAC CAW AQG doub 41 n n CAW NBE AQG sing 42 n n NBE CAL AQG sing 43 n n NBE CAM AQG sing 44 n n CAL CAA AQG sing 45 n n CAM CAB AQG sing 46 n n C8 H1 AQG sing 47 n n N2 H2 AQG sing 48 n n CAA H3 AQG sing 49 n n CAA H4 AQG sing 50 n n CAA H5 AQG sing 51 n n CAB H6 AQG sing 52 n n CAB H7 AQG sing 53 n n CAB H8 AQG sing 54 n n CAD H9 AQG sing 55 n n CAE H10 AQG sing 56 n n CAF H11 AQG sing 57 n n CAG H12 AQG sing 58 n n CAI H13 AQG sing 59 n n CAI H14 AQG sing 60 n n CAJ H15 AQG sing 61 n n CAJ H16 AQG sing 62 n n CAK H17 AQG sing 63 n n CAK H18 AQG sing 64 n n CAL H19 AQG sing 65 n n CAL H20 AQG sing 66 n n CAM H21 AQG sing 67 n n CAM H22 AQG sing 68 n n CAN H23 AQG sing 69 n n CAN H24 AQG sing 70 n n CAO H25 AQG sing 71 n n CAO H26 AQG sing 72 n n CAP H27 AQG sing 73 n n CAP H28 AQG sing 74 n n CBD H29 AQG sing 75 n n N7 H30 AQG sing 76 n n # _atom_sites.entry_id 6JGM _atom_sites.fract_transf_matrix[1][1] 0.018695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AQG A 1 900 900 AQG LIG . C 3 HOH A 1 1001 43 HOH HOH . C 3 HOH A 2 1002 9 HOH HOH . C 3 HOH A 3 1003 67 HOH HOH . C 3 HOH A 4 1004 1 HOH HOH . C 3 HOH A 5 1005 21 HOH HOH . C 3 HOH A 6 1006 51 HOH HOH . C 3 HOH A 7 1007 22 HOH HOH . C 3 HOH A 8 1008 91 HOH HOH . C 3 HOH A 9 1009 19 HOH HOH . C 3 HOH A 10 1010 63 HOH HOH . C 3 HOH A 11 1011 50 HOH HOH . C 3 HOH A 12 1012 33 HOH HOH . C 3 HOH A 13 1013 7 HOH HOH . C 3 HOH A 14 1014 70 HOH HOH . C 3 HOH A 15 1015 60 HOH HOH . C 3 HOH A 16 1016 24 HOH HOH . C 3 HOH A 17 1017 34 HOH HOH . C 3 HOH A 18 1018 36 HOH HOH . C 3 HOH A 19 1019 68 HOH HOH . C 3 HOH A 20 1020 15 HOH HOH . C 3 HOH A 21 1021 25 HOH HOH . C 3 HOH A 22 1022 103 HOH HOH . C 3 HOH A 23 1023 5 HOH HOH . C 3 HOH A 24 1024 27 HOH HOH . C 3 HOH A 25 1025 16 HOH HOH . C 3 HOH A 26 1026 18 HOH HOH . C 3 HOH A 27 1027 14 HOH HOH . C 3 HOH A 28 1028 8 HOH HOH . C 3 HOH A 29 1029 6 HOH HOH . C 3 HOH A 30 1030 12 HOH HOH . C 3 HOH A 31 1031 4 HOH HOH . C 3 HOH A 32 1032 26 HOH HOH . C 3 HOH A 33 1033 97 HOH HOH . C 3 HOH A 34 1034 13 HOH HOH . C 3 HOH A 35 1035 77 HOH HOH . C 3 HOH A 36 1036 69 HOH HOH . C 3 HOH A 37 1037 44 HOH HOH . C 3 HOH A 38 1038 29 HOH HOH . C 3 HOH A 39 1039 79 HOH HOH . C 3 HOH A 40 1040 2 HOH HOH . C 3 HOH A 41 1041 52 HOH HOH . C 3 HOH A 42 1042 42 HOH HOH . C 3 HOH A 43 1043 20 HOH HOH . C 3 HOH A 44 1044 23 HOH HOH . C 3 HOH A 45 1045 46 HOH HOH . C 3 HOH A 46 1046 10 HOH HOH . C 3 HOH A 47 1047 76 HOH HOH . C 3 HOH A 48 1048 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 AQG . . . B 2 12.638 -9.893 13.998 1 26.72 ? C4 AQG 900 A 1 HETATM 2 C C5 AQG . . . B 2 13.375 -9.129 13.135 1 29.54 ? C5 AQG 900 A 1 HETATM 3 C C6 AQG . . . B 2 12.948 -8.979 11.83 1 32.9 ? C6 AQG 900 A 1 HETATM 4 C C8 AQG . . . B 2 14.331 -9.097 15.07 1 28.77 ? C8 AQG 900 A 1 HETATM 5 N N1 AQG . . . B 2 11.822 -9.602 11.44 1 31.67 ? N1 AQG 900 A 1 HETATM 6 N N2 AQG . . . B 2 9.939 -10.963 12.024 1 30.81 ? N2 AQG 900 A 1 HETATM 7 N N3 AQG . . . B 2 11.52 -10.474 13.577 1 28.04 ? N3 AQG 900 A 1 HETATM 8 C C2 AQG . . . B 2 11.099 -10.346 12.315 1 29.84 ? C2 AQG 900 A 1 HETATM 9 C CAA AQG . . . B 2 5.667 -9.908 4.438 1 60.05 ? CAA AQG 900 A 1 HETATM 10 C CAB AQG . . . B 2 8.888 -9.169 5.075 1 62.22 ? CAB AQG 900 A 1 HETATM 11 C CAD AQG . . . B 2 9.476 -9.838 9.937 1 38.59 ? CAD AQG 900 A 1 HETATM 12 C CAE AQG . . . B 2 8.105 -11.682 10.701 1 37.99 ? CAE AQG 900 A 1 HETATM 13 C CAF AQG . . . B 2 8.71 -9.741 8.798 1 43.96 ? CAF AQG 900 A 1 HETATM 14 C CAG AQG . . . B 2 7.34 -11.583 9.54 1 40.06 ? CAG AQG 900 A 1 HETATM 15 C CAI AQG . . . B 2 14.615 -4.257 7.622 1 58.13 ? CAI AQG 900 A 1 HETATM 16 C CAJ AQG . . . B 2 15.108 -4.555 9.03 1 58.2 ? CAJ AQG 900 A 1 HETATM 17 C CAK AQG . . . B 2 14.473 -5.551 6.816 1 61.81 ? CAK AQG 900 A 1 HETATM 18 C CAL AQG . . . B 2 6.341 -11.107 5.083 1 61.03 ? CAL AQG 900 A 1 HETATM 19 C CAM AQG . . . B 2 8.682 -10.55 5.65 1 58.8 ? CAM AQG 900 A 1 HETATM 20 C CAN AQG . . . B 2 14.173 -5.554 9.724 1 58.24 ? CAN AQG 900 A 1 HETATM 21 C CAO AQG . . . B 2 13.675 -6.652 7.524 1 60.37 ? CAO AQG 900 A 1 HETATM 22 C CAP AQG . . . B 2 13.242 -7.916 9.632 1 55.18 ? CAP AQG 900 A 1 HETATM 23 C CAW AQG . . . B 2 6.845 -10.432 7.354 1 52.86 ? CAW AQG 900 A 1 HETATM 24 C CAX AQG . . . B 2 9.194 -10.806 10.907 1 36.43 ? CAX AQG 900 A 1 HETATM 25 C CAY AQG . . . B 2 7.656 -10.62 8.59 1 45.57 ? CAY AQG 900 A 1 HETATM 26 C CBD AQG . . . B 2 14.154 -6.888 8.956 1 58.11 ? CBD AQG 900 A 1 HETATM 27 N N7 AQG . . . B 2 14.429 -8.65 13.813 1 28.94 ? N7 AQG 900 A 1 HETATM 28 N N9 AQG . . . B 2 13.23 -9.867 15.18 1 28 ? N9 AQG 900 A 1 HETATM 29 N NBE AQG . . . B 2 7.294 -10.683 6.112 1 58.91 ? NBE AQG 900 A 1 HETATM 30 O O6 AQG . . . B 2 13.685 -8.212 10.972 1 45.01 ? O6 AQG 900 A 1 HETATM 31 O OAC AQG . . . B 2 5.719 -9.984 7.574 1 53.67 ? OAC AQG 900 A 1 HETATM 32 H H1 AQG . . . B 2 15.039 -8.884 15.853 1 28.87 ? H1 AQG 900 A 1 HETATM 33 H H2 AQG . . . B 2 9.583 -11.591 12.706 1 32.44 ? H2 AQG 900 A 1 HETATM 34 H H3 AQG . . . B 2 6.169 -9.673 3.529 1 60.33 ? H3 AQG 900 A 1 HETATM 35 H H4 AQG . . . B 2 5.706 -9.068 5.084 1 60.27 ? H4 AQG 900 A 1 HETATM 36 H H5 AQG . . . B 2 4.658 -10.159 4.223 1 60.31 ? H5 AQG 900 A 1 HETATM 37 H H6 AQG . . . B 2 9.926 -8.989 4.95 1 61.11 ? H6 AQG 900 A 1 HETATM 38 H H7 AQG . . . B 2 8.483 -8.45 5.741 1 60.99 ? H7 AQG 900 A 1 HETATM 39 H H8 AQG . . . B 2 8.402 -9.098 4.135 1 61.11 ? H8 AQG 900 A 1 HETATM 40 H H9 AQG . . . B 2 10.288 -9.137 10.028 1 39.25 ? H9 AQG 900 A 1 HETATM 41 H H10 AQG . . . B 2 7.848 -12.43 11.438 1 38.25 ? H10 AQG 900 A 1 HETATM 42 H H11 AQG . . . B 2 8.951 -8.996 8.05 1 42.59 ? H11 AQG 900 A 1 HETATM 43 H H12 AQG . . . B 2 6.495 -12.24 9.378 1 40.59 ? H12 AQG 900 A 1 HETATM 44 H H13 AQG . . . B 2 15.312 -3.583 7.121 1 59 ? H13 AQG 900 A 1 HETATM 45 H H14 AQG . . . B 2 13.646 -3.756 7.676 1 59 ? H14 AQG 900 A 1 HETATM 46 H H15 AQG . . . B 2 16.115 -4.974 8.98 1 58.19 ? H15 AQG 900 A 1 HETATM 47 H H16 AQG . . . B 2 15.16 -3.631 9.606 1 58.19 ? H16 AQG 900 A 1 HETATM 48 H H17 AQG . . . B 2 15.462 -5.947 6.604 1 60.58 ? H17 AQG 900 A 1 HETATM 49 H H18 AQG . . . B 2 13.998 -5.324 5.859 1 60.58 ? H18 AQG 900 A 1 HETATM 50 H H19 AQG . . . B 2 6.835 -11.699 4.31 1 60.29 ? H19 AQG 900 A 1 HETATM 51 H H20 AQG . . . B 2 5.575 -11.743 5.537 1 60.28 ? H20 AQG 900 A 1 HETATM 52 H H21 AQG . . . B 2 9.394 -10.711 6.455 1 59.52 ? H21 AQG 900 A 1 HETATM 53 H H22 AQG . . . B 2 8.903 -11.295 4.883 1 59.6 ? H22 AQG 900 A 1 HETATM 54 H H23 AQG . . . B 2 13.166 -5.141 9.77 1 58.12 ? H23 AQG 900 A 1 HETATM 55 H H24 AQG . . . B 2 14.518 -5.717 10.748 1 58.16 ? H24 AQG 900 A 1 HETATM 56 H H25 AQG . . . B 2 13.757 -7.581 6.956 1 60.16 ? H25 AQG 900 A 1 HETATM 57 H H26 AQG . . . B 2 12.629 -6.365 7.54 1 60.17 ? H26 AQG 900 A 1 HETATM 58 H H27 AQG . . . B 2 13.231 -8.835 9.042 1 53.23 ? H27 AQG 900 A 1 HETATM 59 H H28 AQG . . . B 2 12.223 -7.525 9.663 1 53.19 ? H28 AQG 900 A 1 HETATM 60 H H29 AQG . . . B 2 15.176 -7.291 8.924 1 57.99 ? H29 AQG 900 A 1 HETATM 61 H H32 AQG . . . B 2 12.914 -10.365 16.036 1 28.21 ? H32 AQG 900 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 61 #