data_6JII
#
_model_server_result.job_id            MaQlyIgcig-0QjnOdWhoog 
_model_server_result.datetime_utc      '2024-11-04 20:32:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":6002}' 
#
_entry.id    6JII 
#
_exptl.entry_id    6JII 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              194.191 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CAFFEINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JII 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JII 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 O N N 
? 6 S N N 
? 6 W N N 
? 6 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 3923 B GLU 3923 1_555 N CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc2 B OE1 GLN 3926 B GLN 3926 1_555 N CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc3 B SG CYS 4889 B CYS 4889 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc4 B N CYS 4892 B CYS 4892 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc5 B SG CYS 4892 B CYS 4892 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc6 B NE2 HIS 4914 B HIS 4914 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 B O THR 4932 B THR 4932 1_555 N CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc8 E OE2 GLU 3923 E GLU 3923 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc9 E OE1 GLN 3926 E GLN 3926 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc10 E SG CYS 4889 E CYS 4889 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc11 E N CYS 4892 E CYS 4892 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc12 E SG CYS 4892 E CYS 4892 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc13 E NE2 HIS 4914 E HIS 4914 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc14 E O THR 4932 E THR 4932 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc15 H OE2 GLU 3923 H GLU 3923 1_555 V CA CA . H CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc16 H OE1 GLN 3926 H GLN 3926 1_555 V CA CA . H CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc17 H SG CYS 4889 H CYS 4889 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc18 H N CYS 4892 H CYS 4892 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc19 H SG CYS 4892 H CYS 4892 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc20 H NE2 HIS 4914 H HIS 4914 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc21 H O THR 4932 H THR 4932 1_555 V CA CA . H CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc22 K OE2 GLU 3923 K GLU 3923 1_555 Z CA CA . K CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc23 K OE1 GLN 3926 K GLN 3926 1_555 Z CA CA . K CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? 
metalc ? metalc24 K SG CYS 4889 K CYS 4889 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc25 K N CYS 4892 K CYS 4892 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc26 K SG CYS 4892 K CYS 4892 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc27 K NE2 HIS 4914 K HIS 4914 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc28 K O THR 4932 K THR 4932 1_555 Z CA CA . K CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
#
_chem_comp.formula           'C8 H10 N4 O2' 
_chem_comp.formula_weight    194.191 
_chem_comp.id                CFF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CAFFEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CFF sing 119 n y 
N1 C10 CFF sing 120 n n 
N1 C6 CFF sing 121 n y 
C2 N3 CFF sing 122 n y 
C2 O11 CFF doub 123 n n 
C10 H101 CFF sing 124 n n 
C10 H102 CFF sing 125 n n 
C10 H103 CFF sing 126 n n 
C6 C5 CFF sing 127 n y 
C6 O13 CFF doub 128 n n 
N3 C12 CFF sing 129 n n 
N3 C4 CFF sing 130 n y 
C12 H121 CFF sing 131 n n 
C12 H122 CFF sing 132 n n 
C12 H123 CFF sing 133 n n 
C4 C5 CFF doub 134 n y 
C4 N9 CFF sing 135 n y 
C5 N7 CFF sing 136 n y 
N9 C8 CFF doub 137 n y 
N7 C8 CFF sing 138 n y 
N7 C14 CFF sing 139 n n 
C8 H81 CFF sing 140 n n 
C14 H141 CFF sing 141 n n 
C14 H142 CFF sing 142 n n 
C14 H143 CFF sing 143 n n 
#
_atom_sites.entry_id                     6JII 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 ZN B 1 6000 6000 ZN ZN . 
N 5 CA B 1 6001 6001 CA CA . 
O 6 CFF B 1 6002 6002 CFF CFF . 
P 7 ATP B 1 6003 6003 ATP ATP . 
Q 4 ZN E 1 6000 6000 ZN ZN . 
R 5 CA E 1 6001 6001 CA CA . 
S 6 CFF E 1 6002 6002 CFF CFF . 
T 7 ATP E 1 6003 6003 ATP ATP . 
U 4 ZN H 1 6000 6000 ZN ZN . 
V 5 CA H 1 6001 6001 CA CA . 
W 6 CFF H 1 6002 6002 CFF CFF . 
X 7 ATP H 1 6003 6003 ATP ATP . 
Y 4 ZN K 1 6000 6000 ZN ZN . 
Z 5 CA K 1 6001 6001 CA CA . 
AA 6 CFF K 1 6002 6002 CFF CFF . 
BA 7 ATP K 1 6003 6003 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CFF . . . O 6 197.119 258.947 171.912 1 77.96 ? N1 CFF 6002 B 1 
HETATM 2 C C2 CFF . . . O 6 196.843 258.264 170.791 1 77.96 ? C2 CFF 6002 B 1 
HETATM 3 C C10 CFF . . . O 6 196.336 260.112 172.268 1 77.96 ? C10 CFF 6002 B 1 
HETATM 4 C C6 CFF . . . O 6 198.092 258.549 172.692 1 77.96 ? C6 CFF 6002 B 1 
HETATM 5 N N3 CFF . . . O 6 197.568 257.185 170.457 1 77.96 ? N3 CFF 6002 B 1 
HETATM 6 O O11 CFF . . . O 6 195.974 258.629 170.084 1 77.96 ? O11 CFF 6002 B 1 
HETATM 7 C C12 CFF . . . O 6 197.267 256.45 169.247 1 77.96 ? C12 CFF 6002 B 1 
HETATM 8 C C4 CFF . . . O 6 198.556 256.775 171.246 1 77.96 ? C4 CFF 6002 B 1 
HETATM 9 C C5 CFF . . . O 6 198.827 257.439 172.359 1 77.96 ? C5 CFF 6002 B 1 
HETATM 10 N N9 CFF . . . O 6 199.399 255.751 171.144 1 77.96 ? N9 CFF 6002 B 1 
HETATM 11 O O13 CFF . . . O 6 198.317 259.156 173.682 1 77.96 ? O13 CFF 6002 B 1 
HETATM 12 N N7 CFF . . . O 6 199.848 256.821 172.951 1 77.96 ? N7 CFF 6002 B 1 
HETATM 13 C C8 CFF . . . O 6 200.198 255.779 172.204 1 77.96 ? C8 CFF 6002 B 1 
HETATM 14 C C14 CFF . . . O 6 200.659 256.929 174.146 1 77.96 ? C14 CFF 6002 B 1 
#
_model_server_stats.io_time_ms              183 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    197 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#