data_6JII
#
_model_server_result.job_id            1htUe_7xRAHhPDZoMD809Q 
_model_server_result.datetime_utc      '2024-11-04 20:32:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":6003}' 
#
_entry.id    6JII 
#
_exptl.entry_id    6JII 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JII 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JII 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 P N N 
? 7 T N N 
? 7 X N N 
? 7 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 3923 B GLU 3923 1_555 N CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc2 B OE1 GLN 3926 B GLN 3926 1_555 N CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc3 B SG CYS 4889 B CYS 4889 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc4 B N CYS 4892 B CYS 4892 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc5 B SG CYS 4892 B CYS 4892 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc6 B NE2 HIS 4914 B HIS 4914 1_555 M ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 B O THR 4932 B THR 4932 1_555 N CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc8 E OE2 GLU 3923 E GLU 3923 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc9 E OE1 GLN 3926 E GLN 3926 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc10 E SG CYS 4889 E CYS 4889 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc11 E N CYS 4892 E CYS 4892 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc12 E SG CYS 4892 E CYS 4892 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc13 E NE2 HIS 4914 E HIS 4914 1_555 Q ZN ZN . E ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc14 E O THR 4932 E THR 4932 1_555 R CA CA . E CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc15 H OE2 GLU 3923 H GLU 3923 1_555 V CA CA . H CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc16 H OE1 GLN 3926 H GLN 3926 1_555 V CA CA . H CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc17 H SG CYS 4889 H CYS 4889 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc18 H N CYS 4892 H CYS 4892 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc19 H SG CYS 4892 H CYS 4892 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc20 H NE2 HIS 4914 H HIS 4914 1_555 U ZN ZN . H ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc21 H O THR 4932 H THR 4932 1_555 V CA CA . H CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc22 K OE2 GLU 3923 K GLU 3923 1_555 Z CA CA . K CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc23 K OE1 GLN 3926 K GLN 3926 1_555 Z CA CA . K CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? 
metalc ? metalc24 K SG CYS 4889 K CYS 4889 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc25 K N CYS 4892 K CYS 4892 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc26 K SG CYS 4892 K CYS 4892 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc27 K NE2 HIS 4914 K HIS 4914 1_555 Y ZN ZN . K ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc28 K O THR 4932 K THR 4932 1_555 Z CA CA . K CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6JII 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 ZN B 1 6000 6000 ZN ZN . 
N 5 CA B 1 6001 6001 CA CA . 
O 6 CFF B 1 6002 6002 CFF CFF . 
P 7 ATP B 1 6003 6003 ATP ATP . 
Q 4 ZN E 1 6000 6000 ZN ZN . 
R 5 CA E 1 6001 6001 CA CA . 
S 6 CFF E 1 6002 6002 CFF CFF . 
T 7 ATP E 1 6003 6003 ATP ATP . 
U 4 ZN H 1 6000 6000 ZN ZN . 
V 5 CA H 1 6001 6001 CA CA . 
W 6 CFF H 1 6002 6002 CFF CFF . 
X 7 ATP H 1 6003 6003 ATP ATP . 
Y 4 ZN K 1 6000 6000 ZN ZN . 
Z 5 CA K 1 6001 6001 CA CA . 
AA 6 CFF K 1 6002 6002 CFF CFF . 
BA 7 ATP K 1 6003 6003 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . X 7 241.218 201.144 160.748 1 106.53 ? PG ATP 6003 H 1 
HETATM 2 O O1G ATP . . . X 7 239.823 201.695 160.617 1 106.53 ? O1G ATP 6003 H 1 
HETATM 3 O O2G ATP . . . X 7 241.776 200.617 159.449 1 106.53 ? O2G ATP 6003 H 1 
HETATM 4 O O3G ATP . . . X 7 241.396 200.216 161.919 1 106.53 ? O3G ATP 6003 H 1 
HETATM 5 P PB ATP . . . X 7 242.678 202.808 162.541 1 106.53 ? PB ATP 6003 H 1 
HETATM 6 O O1B ATP . . . X 7 242.965 204.288 162.577 1 106.53 ? O1B ATP 6003 H 1 
HETATM 7 O O2B ATP . . . X 7 243.785 201.832 162.85 1 106.53 ? O2B ATP 6003 H 1 
HETATM 8 O O3B ATP . . . X 7 242.116 202.441 161.075 1 106.53 ? O3B ATP 6003 H 1 
HETATM 9 P PA ATP . . . X 7 240.071 203.281 163.421 1 106.53 ? PA ATP 6003 H 1 
HETATM 10 O O1A ATP . . . X 7 240.099 204.159 162.2 1 106.53 ? O1A ATP 6003 H 1 
HETATM 11 O O2A ATP . . . X 7 238.943 202.308 163.618 1 106.53 ? O2A ATP 6003 H 1 
HETATM 12 O O3A ATP . . . X 7 241.463 202.504 163.547 1 106.53 ? O3A ATP 6003 H 1 
HETATM 13 O O5' ATP . . . X 7 240.077 204.244 164.682 1 106.53 ? O5' ATP 6003 H 1 
HETATM 14 C C5' ATP . . . X 7 239.007 204.081 165.586 1 106.53 ? C5' ATP 6003 H 1 
HETATM 15 C C4' ATP . . . X 7 238.654 205.478 166.021 1 106.53 ? C4' ATP 6003 H 1 
HETATM 16 O O4' ATP . . . X 7 237.382 205.464 166.646 1 106.53 ? O4' ATP 6003 H 1 
HETATM 17 C C3' ATP . . . X 7 239.667 205.967 167.023 1 106.53 ? C3' ATP 6003 H 1 
HETATM 18 O O3' ATP . . . X 7 240.225 207.185 166.542 1 106.53 ? O3' ATP 6003 H 1 
HETATM 19 C C2' ATP . . . X 7 238.888 206.27 168.27 1 106.53 ? C2' ATP 6003 H 1 
HETATM 20 O O2' ATP . . . X 7 239.13 207.634 168.599 1 106.53 ? O2' ATP 6003 H 1 
HETATM 21 C C1' ATP . . . X 7 237.436 206.143 167.889 1 106.53 ? C1' ATP 6003 H 1 
HETATM 22 N N9 ATP . . . X 7 236.646 205.333 168.829 1 106.53 ? N9 ATP 6003 H 1 
HETATM 23 C C8 ATP . . . X 7 235.641 205.778 169.598 1 106.53 ? C8 ATP 6003 H 1 
HETATM 24 N N7 ATP . . . X 7 235.113 204.772 170.334 1 106.53 ? N7 ATP 6003 H 1 
HETATM 25 C C5 ATP . . . X 7 235.783 203.663 170.006 1 106.53 ? C5 ATP 6003 H 1 
HETATM 26 C C6 ATP . . . X 7 235.75 202.258 170.41 1 106.53 ? C6 ATP 6003 H 1 
HETATM 27 N N6 ATP . . . X 7 234.862 201.87 171.329 1 106.53 ? N6 ATP 6003 H 1 
HETATM 28 N N1 ATP . . . X 7 236.624 201.404 169.859 1 106.53 ? N1 ATP 6003 H 1 
HETATM 29 C C2 ATP . . . X 7 237.518 201.814 168.953 1 106.53 ? C2 ATP 6003 H 1 
HETATM 30 N N3 ATP . . . X 7 237.616 203.081 168.537 1 106.53 ? N3 ATP 6003 H 1 
HETATM 31 C C4 ATP . . . X 7 236.794 204.032 169.022 1 106.53 ? C4 ATP 6003 H 1 
#
_model_server_stats.io_time_ms              205 
_model_server_stats.parse_time_ms           141 
_model_server_stats.create_model_time_ms    144 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#