data_6JIU # _model_server_result.job_id 1cSuUf5wg904-_Md3ZzLxA _model_server_result.datetime_utc '2024-12-26 22:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":6002}' # _entry.id 6JIU # _exptl.entry_id 6JIU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JIU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 U N N ? 6 AA N N ? 6 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 3849 A GLU 3849 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 A OE1 GLU 3923 A GLU 3923 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc3 A OE2 GLU 3923 A GLU 3923 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc4 A SG CYS 4889 A CYS 4889 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 A N CYS 4892 A CYS 4892 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 A SG CYS 4892 A CYS 4892 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc7 A ND1 HIS 4914 A HIS 4914 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc8 A NE2 HIS 4914 A HIS 4914 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 A O THR 4932 A THR 4932 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc10 C O THR 27 C THR 27 1_555 Q CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc11 C OE2 GLU 32 C GLU 32 1_555 Q CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc12 D OE2 GLU 3849 D GLU 3849 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc13 D OE1 GLU 3923 D GLU 3923 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc14 D OE2 GLU 3923 D GLU 3923 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc15 D SG CYS 4889 D CYS 4889 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc16 D N CYS 4892 D CYS 4892 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc17 D SG CYS 4892 D CYS 4892 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc18 D ND1 HIS 4914 D HIS 4914 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc19 D NE2 HIS 4914 D HIS 4914 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc20 D O THR 4932 D THR 4932 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc21 F O THR 27 F THR 27 1_555 W CA CA . F CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc22 F OE2 GLU 32 F GLU 32 1_555 W CA CA . F CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc23 G OE2 GLU 3849 G GLU 3849 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc24 G OE1 GLU 3923 G GLU 3923 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc25 G OE2 GLU 3923 G GLU 3923 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc26 G SG CYS 4889 G CYS 4889 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc27 G N CYS 4892 G CYS 4892 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc28 G SG CYS 4892 G CYS 4892 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc29 G ND1 HIS 4914 G HIS 4914 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc30 G NE2 HIS 4914 G HIS 4914 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc31 G O THR 4932 G THR 4932 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc32 I O THR 27 I THR 27 1_555 CA CA CA . I CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc33 I OE2 GLU 32 I GLU 32 1_555 CA CA CA . I CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc34 J OE2 GLU 3849 J GLU 3849 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc35 J OE1 GLU 3923 J GLU 3923 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc36 J OE2 GLU 3923 J GLU 3923 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc37 J SG CYS 4889 J CYS 4889 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc38 J N CYS 4892 J CYS 4892 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc39 J SG CYS 4892 J CYS 4892 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc40 J ND1 HIS 4914 J HIS 4914 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc41 J NE2 HIS 4914 J HIS 4914 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc42 J O THR 4932 J THR 4932 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc43 L O THR 27 L THR 27 1_555 IA CA CA . L CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc44 L OE2 GLU 32 L GLU 32 1_555 IA CA CA . L CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6JIU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN A 1 6000 6000 ZN ZN . N 5 CA A 1 6001 6001 CA CA . O 6 ATP A 1 6002 6002 ATP ATP . P 7 CFF A 1 6003 6003 CFF CFF . Q 5 CA C 1 201 149 CA CA . R 5 CA C 1 202 150 CA CA . S 4 ZN D 1 6000 6000 ZN ZN . T 5 CA D 1 6001 6001 CA CA . U 6 ATP D 1 6002 6002 ATP ATP . V 7 CFF D 1 6003 6003 CFF CFF . W 5 CA F 1 201 149 CA CA . X 5 CA F 1 202 150 CA CA . Y 4 ZN G 1 6000 6000 ZN ZN . Z 5 CA G 1 6001 6001 CA CA . AA 6 ATP G 1 6002 6002 ATP ATP . BA 7 CFF G 1 6003 6003 CFF CFF . CA 5 CA I 1 201 149 CA CA . DA 5 CA I 1 202 150 CA CA . EA 4 ZN J 1 6000 6000 ZN ZN . FA 5 CA J 1 6001 6001 CA CA . GA 6 ATP J 1 6002 6002 ATP ATP . HA 7 CFF J 1 6003 6003 CFF CFF . IA 5 CA L 1 201 149 CA CA . JA 5 CA L 1 202 150 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . U 6 287.505 249.785 209.468 1 150.54 ? PG ATP 6002 D 1 HETATM 2 O O1G ATP . . . U 6 288.333 249.777 208.209 1 150.54 ? O1G ATP 6002 D 1 HETATM 3 O O2G ATP . . . U 6 286.31 248.865 209.422 1 150.54 ? O2G ATP 6002 D 1 HETATM 4 O O3G ATP . . . U 6 287.195 251.157 210.008 1 150.54 ? O3G ATP 6002 D 1 HETATM 5 P PB ATP . . . U 6 290.05 249.213 210.513 1 150.54 ? PB ATP 6002 D 1 HETATM 6 O O1B ATP . . . U 6 290.477 248.227 209.458 1 150.54 ? O1B ATP 6002 D 1 HETATM 7 O O2B ATP . . . U 6 290.602 249.074 211.907 1 150.54 ? O2B ATP 6002 D 1 HETATM 8 O O3B ATP . . . U 6 288.448 249.139 210.597 1 150.54 ? O3B ATP 6002 D 1 HETATM 9 P PA ATP . . . U 6 290.213 251.996 210.886 1 150.54 ? PA ATP 6002 D 1 HETATM 10 O O1A ATP . . . U 6 291.547 252.283 211.524 1 150.54 ? O1A ATP 6002 D 1 HETATM 11 O O2A ATP . . . U 6 289.51 253.053 210.075 1 150.54 ? O2A ATP 6002 D 1 HETATM 12 O O3A ATP . . . U 6 290.362 250.691 209.967 1 150.54 ? O3A ATP 6002 D 1 HETATM 13 O O5' ATP . . . U 6 289.181 251.549 212.034 1 150.54 ? O5' ATP 6002 D 1 HETATM 14 C C5' ATP . . . U 6 289.4 251.974 213.371 1 150.54 ? C5' ATP 6002 D 1 HETATM 15 C C4' ATP . . . U 6 288.542 253.205 213.614 1 150.54 ? C4' ATP 6002 D 1 HETATM 16 O O4' ATP . . . U 6 287.232 252.853 214.049 1 150.54 ? O4' ATP 6002 D 1 HETATM 17 C C3' ATP . . . U 6 289.141 254.086 214.692 1 150.54 ? C3' ATP 6002 D 1 HETATM 18 O O3' ATP . . . U 6 289.809 255.193 214.092 1 150.54 ? O3' ATP 6002 D 1 HETATM 19 C C2' ATP . . . U 6 287.964 254.58 215.495 1 150.54 ? C2' ATP 6002 D 1 HETATM 20 O O2' ATP . . . U 6 287.815 255.988 215.324 1 150.54 ? O2' ATP 6002 D 1 HETATM 21 C C1' ATP . . . U 6 286.753 253.865 214.932 1 150.54 ? C1' ATP 6002 D 1 HETATM 22 N N9 ATP . . . U 6 286.018 253.317 216.089 1 150.54 ? N9 ATP 6002 D 1 HETATM 23 C C8 ATP . . . U 6 285.307 254.071 216.94 1 150.54 ? C8 ATP 6002 D 1 HETATM 24 N N7 ATP . . . U 6 284.744 253.318 217.912 1 150.54 ? N7 ATP 6002 D 1 HETATM 25 C C5 ATP . . . U 6 285.097 252.048 217.679 1 150.54 ? C5 ATP 6002 D 1 HETATM 26 C C6 ATP . . . U 6 284.838 250.759 218.339 1 150.54 ? C6 ATP 6002 D 1 HETATM 27 N N6 ATP . . . U 6 284.073 250.702 219.45 1 150.54 ? N6 ATP 6002 D 1 HETATM 28 N N1 ATP . . . U 6 285.393 249.662 217.803 1 150.54 ? N1 ATP 6002 D 1 HETATM 29 C C2 ATP . . . U 6 286.158 249.728 216.701 1 150.54 ? C2 ATP 6002 D 1 HETATM 30 N N3 ATP . . . U 6 286.435 250.866 216.052 1 150.54 ? N3 ATP 6002 D 1 HETATM 31 C C4 ATP . . . U 6 285.946 252.046 216.485 1 150.54 ? C4 ATP 6002 D 1 # _model_server_stats.io_time_ms 180 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 591 _model_server_stats.query_time_ms 1173 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #