data_6JIU
#
_model_server_result.job_id            b3bhWxFVkWDTAMPA1ivX8Q 
_model_server_result.datetime_utc      '2024-12-26 22:22:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jiu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":6003}' 
#
_entry.id    6JIU 
#
_exptl.entry_id    6JIU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              194.191 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CAFFEINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6JIU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 P N N 
? 7 V N N 
? 7 BA N N 
? 7 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 3849 A GLU 3849 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc2 A OE1 GLU 3923 A GLU 3923 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
metalc ? metalc3 A OE2 GLU 3923 A GLU 3923 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc4 A SG CYS 4889 A CYS 4889 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc5 A N CYS 4892 A CYS 4892 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc6 A SG CYS 4892 A CYS 4892 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc7 A ND1 HIS 4914 A HIS 4914 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc8 A NE2 HIS 4914 A HIS 4914 1_555 M ZN ZN . A ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc9 A O THR 4932 A THR 4932 1_555 N CA CA . A CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc10 C O THR 27 C THR 27 1_555 Q CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc11 C OE2 GLU 32 C GLU 32 1_555 Q CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc12 D OE2 GLU 3849 D GLU 3849 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc13 D OE1 GLU 3923 D GLU 3923 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? 
metalc ? metalc14 D OE2 GLU 3923 D GLU 3923 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc15 D SG CYS 4889 D CYS 4889 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc16 D N CYS 4892 D CYS 4892 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc17 D SG CYS 4892 D CYS 4892 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc18 D ND1 HIS 4914 D HIS 4914 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc19 D NE2 HIS 4914 D HIS 4914 1_555 S ZN ZN . D ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc20 D O THR 4932 D THR 4932 1_555 T CA CA . D CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc21 F O THR 27 F THR 27 1_555 W CA CA . F CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc22 F OE2 GLU 32 F GLU 32 1_555 W CA CA . F CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc23 G OE2 GLU 3849 G GLU 3849 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc24 G OE1 GLU 3923 G GLU 3923 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
metalc ? metalc25 G OE2 GLU 3923 G GLU 3923 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc26 G SG CYS 4889 G CYS 4889 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc27 G N CYS 4892 G CYS 4892 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc28 G SG CYS 4892 G CYS 4892 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc29 G ND1 HIS 4914 G HIS 4914 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc30 G NE2 HIS 4914 G HIS 4914 1_555 Y ZN ZN . G ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc31 G O THR 4932 G THR 4932 1_555 Z CA CA . G CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc32 I O THR 27 I THR 27 1_555 CA CA CA . I CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc33 I OE2 GLU 32 I GLU 32 1_555 CA CA CA . I CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc34 J OE2 GLU 3849 J GLU 3849 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc35 J OE1 GLU 3923 J GLU 3923 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
metalc ? metalc36 J OE2 GLU 3923 J GLU 3923 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc37 J SG CYS 4889 J CYS 4889 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc38 J N CYS 4892 J CYS 4892 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc39 J SG CYS 4892 J CYS 4892 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc40 J ND1 HIS 4914 J HIS 4914 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc41 J NE2 HIS 4914 J HIS 4914 1_555 EA ZN ZN . J ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc42 J O THR 4932 J THR 4932 1_555 FA CA CA . J CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc43 L O THR 27 L THR 27 1_555 IA CA CA . L CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc44 L OE2 GLU 32 L GLU 32 1_555 IA CA CA . L CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
#
_chem_comp.formula           'C8 H10 N4 O2' 
_chem_comp.formula_weight    194.191 
_chem_comp.id                CFF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CAFFEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CFF sing 119 n y 
N1 C10 CFF sing 120 n n 
N1 C6 CFF sing 121 n y 
C2 N3 CFF sing 122 n y 
C2 O11 CFF doub 123 n n 
C10 H101 CFF sing 124 n n 
C10 H102 CFF sing 125 n n 
C10 H103 CFF sing 126 n n 
C6 C5 CFF sing 127 n y 
C6 O13 CFF doub 128 n n 
N3 C12 CFF sing 129 n n 
N3 C4 CFF sing 130 n y 
C12 H121 CFF sing 131 n n 
C12 H122 CFF sing 132 n n 
C12 H123 CFF sing 133 n n 
C4 C5 CFF doub 134 n y 
C4 N9 CFF sing 135 n y 
C5 N7 CFF sing 136 n y 
N9 C8 CFF doub 137 n y 
N7 C8 CFF sing 138 n y 
N7 C14 CFF sing 139 n n 
C8 H81 CFF sing 140 n n 
C14 H141 CFF sing 141 n n 
C14 H142 CFF sing 142 n n 
C14 H143 CFF sing 143 n n 
#
_atom_sites.entry_id                     6JIU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 ZN A 1 6000 6000 ZN ZN . 
N 5 CA A 1 6001 6001 CA CA . 
O 6 ATP A 1 6002 6002 ATP ATP . 
P 7 CFF A 1 6003 6003 CFF CFF . 
Q 5 CA C 1 201 149 CA CA . 
R 5 CA C 1 202 150 CA CA . 
S 4 ZN D 1 6000 6000 ZN ZN . 
T 5 CA D 1 6001 6001 CA CA . 
U 6 ATP D 1 6002 6002 ATP ATP . 
V 7 CFF D 1 6003 6003 CFF CFF . 
W 5 CA F 1 201 149 CA CA . 
X 5 CA F 1 202 150 CA CA . 
Y 4 ZN G 1 6000 6000 ZN ZN . 
Z 5 CA G 1 6001 6001 CA CA . 
AA 6 ATP G 1 6002 6002 ATP ATP . 
BA 7 CFF G 1 6003 6003 CFF CFF . 
CA 5 CA I 1 201 149 CA CA . 
DA 5 CA I 1 202 150 CA CA . 
EA 4 ZN J 1 6000 6000 ZN ZN . 
FA 5 CA J 1 6001 6001 CA CA . 
GA 6 ATP J 1 6002 6002 ATP ATP . 
HA 7 CFF J 1 6003 6003 CFF CFF . 
IA 5 CA L 1 201 149 CA CA . 
JA 5 CA L 1 202 150 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CFF . . . V 7 287.642 225.264 220.947 1 113.51 ? N1 CFF 6003 D 1 
HETATM 2 C C2 CFF . . . V 7 287.929 226.036 219.882 1 113.51 ? C2 CFF 6003 D 1 
HETATM 3 C C10 CFF . . . V 7 288.403 224.055 221.187 1 113.51 ? C10 CFF 6003 D 1 
HETATM 4 C C6 CFF . . . V 7 286.677 225.608 221.774 1 113.51 ? C6 CFF 6003 D 1 
HETATM 5 N N3 CFF . . . V 7 287.224 227.157 219.663 1 113.51 ? N3 CFF 6003 D 1 
HETATM 6 O O11 CFF . . . V 7 288.795 225.726 219.141 1 113.51 ? O11 CFF 6003 D 1 
HETATM 7 C C12 CFF . . . V 7 287.522 227.997 218.525 1 113.51 ? C12 CFF 6003 D 1 
HETATM 8 C C4 CFF . . . V 7 286.252 227.511 220.5 1 113.51 ? C4 CFF 6003 D 1 
HETATM 9 C C5 CFF . . . V 7 285.96 226.752 221.55 1 113.51 ? C5 CFF 6003 D 1 
HETATM 10 N N9 CFF . . . V 7 285.427 228.553 220.49 1 113.51 ? N9 CFF 6003 D 1 
HETATM 11 O O13 CFF . . . V 7 286.433 224.925 222.706 1 113.51 ? O13 CFF 6003 D 1 
HETATM 12 N N7 CFF . . . V 7 284.951 227.331 222.207 1 113.51 ? N7 CFF 6003 D 1 
HETATM 13 C C8 CFF . . . V 7 284.631 228.442 221.547 1 113.51 ? C8 CFF 6003 D 1 
HETATM 14 C C14 CFF . . . V 7 284.121 227.136 223.383 1 113.51 ? C14 CFF 6003 D 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    142 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           14 
#