data_6JJ5 # _model_server_result.job_id jq6nM55HfAfsbQlORXsm_A _model_server_result.datetime_utc '2024-10-19 03:45:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6JJ5 # _exptl.entry_id 6JJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-((1-methyl-2-oxo-1,2,2a1,5a-tetrahydro-6H-pyrido[3',2':6,7]azepino[4,3,2-cd]isoindol-6-yl)methyl)benzamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JJ5 _cell.length_a 32.06 _cell.length_b 47.2 _cell.length_c 79.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H18 N4 O2' _chem_comp.formula_weight 382.415 _chem_comp.id C6X _chem_comp.mon_nstd_flag . _chem_comp.name "3-((1-methyl-2-oxo-1,2,2a1,5a-tetrahydro-6H-pyrido[3',2':6,7]azepino[4,3,2-cd]isoindol-6-yl)methyl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 C6X doub 70 n n C7 N9 C6X sing 71 n n C7 C4 C6X sing 72 n n C5 C4 C6X doub 73 n y C5 C6 C6X sing 74 n y C4 C3 C6X sing 75 n y C6 C1 C6X doub 76 n y C3 C2 C6X doub 77 n y C1 C2 C6X sing 78 n y C2 C10 C6X sing 79 n n C10 N11 C6X sing 80 n n C16 C17 C6X sing 81 n y C16 C15 C6X doub 82 n y C17 C12 C6X doub 83 n y C15 C14 C6X sing 84 n y C12 N11 C6X sing 85 n n C12 C13 C6X sing 86 n y N11 C18 C6X sing 87 n n C14 C13 C6X doub 88 n y C14 C26 C6X sing 89 n n C13 C24 C6X sing 90 n n N19 C18 C6X sing 91 n y N19 C20 C6X doub 92 n y C18 C23 C6X doub 93 n y C26 O27 C6X doub 94 n n C26 N25 C6X sing 95 n n C24 N25 C6X sing 96 n n C24 C29 C6X doub 97 n n C20 C21 C6X sing 98 n y N25 C28 C6X sing 99 n n C23 C29 C6X sing 100 n n C23 C22 C6X sing 101 n y C21 C22 C6X doub 102 n y C1 H1 C6X sing 103 n n C10 H2 C6X sing 104 n n C10 H3 C6X sing 105 n n C15 H4 C6X sing 106 n n C16 H5 C6X sing 107 n n C17 H6 C6X sing 108 n n C20 H7 C6X sing 109 n n C21 H8 C6X sing 110 n n C22 H9 C6X sing 111 n n C28 H10 C6X sing 112 n n C28 H11 C6X sing 113 n n C28 H12 C6X sing 114 n n C29 H13 C6X sing 115 n n C3 H14 C6X sing 116 n n C5 H15 C6X sing 117 n n C6 H16 C6X sing 118 n n N9 H17 C6X sing 119 n n N9 H18 C6X sing 120 n n # _atom_sites.entry_id 6JJ5 _atom_sites.fract_transf_matrix[1][1] 0.031192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C6X A 1 201 201 C6X ewj . C 3 HOH A 1 301 98 HOH HOH . C 3 HOH A 2 302 38 HOH HOH . C 3 HOH A 3 303 2 HOH HOH . C 3 HOH A 4 304 32 HOH HOH . C 3 HOH A 5 305 45 HOH HOH . C 3 HOH A 6 306 1 HOH HOH . C 3 HOH A 7 307 3 HOH HOH . C 3 HOH A 8 308 74 HOH HOH . C 3 HOH A 9 309 115 HOH HOH . C 3 HOH A 10 310 138 HOH HOH . C 3 HOH A 11 311 170 HOH HOH . C 3 HOH A 12 312 106 HOH HOH . C 3 HOH A 13 313 55 HOH HOH . C 3 HOH A 14 314 31 HOH HOH . C 3 HOH A 15 315 110 HOH HOH . C 3 HOH A 16 316 28 HOH HOH . C 3 HOH A 17 317 92 HOH HOH . C 3 HOH A 18 318 134 HOH HOH . C 3 HOH A 19 319 70 HOH HOH . C 3 HOH A 20 320 121 HOH HOH . C 3 HOH A 21 321 5 HOH HOH . C 3 HOH A 22 322 79 HOH HOH . C 3 HOH A 23 323 57 HOH HOH . C 3 HOH A 24 324 73 HOH HOH . C 3 HOH A 25 325 117 HOH HOH . C 3 HOH A 26 326 168 HOH HOH . C 3 HOH A 27 327 76 HOH HOH . C 3 HOH A 28 328 18 HOH HOH . C 3 HOH A 29 329 97 HOH HOH . C 3 HOH A 30 330 160 HOH HOH . C 3 HOH A 31 331 58 HOH HOH . C 3 HOH A 32 332 13 HOH HOH . C 3 HOH A 33 333 120 HOH HOH . C 3 HOH A 34 334 90 HOH HOH . C 3 HOH A 35 335 94 HOH HOH . C 3 HOH A 36 336 67 HOH HOH . C 3 HOH A 37 337 64 HOH HOH . C 3 HOH A 38 338 23 HOH HOH . C 3 HOH A 39 339 43 HOH HOH . C 3 HOH A 40 340 20 HOH HOH . C 3 HOH A 41 341 12 HOH HOH . C 3 HOH A 42 342 8 HOH HOH . C 3 HOH A 43 343 101 HOH HOH . C 3 HOH A 44 344 71 HOH HOH . C 3 HOH A 45 345 46 HOH HOH . C 3 HOH A 46 346 113 HOH HOH . C 3 HOH A 47 347 29 HOH HOH . C 3 HOH A 48 348 11 HOH HOH . C 3 HOH A 49 349 21 HOH HOH . C 3 HOH A 50 350 158 HOH HOH . C 3 HOH A 51 351 39 HOH HOH . C 3 HOH A 52 352 50 HOH HOH . C 3 HOH A 53 353 122 HOH HOH . C 3 HOH A 54 354 48 HOH HOH . C 3 HOH A 55 355 164 HOH HOH . C 3 HOH A 56 356 34 HOH HOH . C 3 HOH A 57 357 56 HOH HOH . C 3 HOH A 58 358 172 HOH HOH . C 3 HOH A 59 359 124 HOH HOH . C 3 HOH A 60 360 177 HOH HOH . C 3 HOH A 61 361 63 HOH HOH . C 3 HOH A 62 362 103 HOH HOH . C 3 HOH A 63 363 7 HOH HOH . C 3 HOH A 64 364 9 HOH HOH . C 3 HOH A 65 365 107 HOH HOH . C 3 HOH A 66 366 4 HOH HOH . C 3 HOH A 67 367 44 HOH HOH . C 3 HOH A 68 368 100 HOH HOH . C 3 HOH A 69 369 42 HOH HOH . C 3 HOH A 70 370 144 HOH HOH . C 3 HOH A 71 371 33 HOH HOH . C 3 HOH A 72 372 36 HOH HOH . C 3 HOH A 73 373 80 HOH HOH . C 3 HOH A 74 374 22 HOH HOH . C 3 HOH A 75 375 19 HOH HOH . C 3 HOH A 76 376 62 HOH HOH . C 3 HOH A 77 377 27 HOH HOH . C 3 HOH A 78 378 108 HOH HOH . C 3 HOH A 79 379 81 HOH HOH . C 3 HOH A 80 380 95 HOH HOH . C 3 HOH A 81 381 84 HOH HOH . C 3 HOH A 82 382 53 HOH HOH . C 3 HOH A 83 383 88 HOH HOH . C 3 HOH A 84 384 104 HOH HOH . C 3 HOH A 85 385 6 HOH HOH . C 3 HOH A 86 386 52 HOH HOH . C 3 HOH A 87 387 26 HOH HOH . C 3 HOH A 88 388 137 HOH HOH . C 3 HOH A 89 389 166 HOH HOH . C 3 HOH A 90 390 83 HOH HOH . C 3 HOH A 91 391 75 HOH HOH . C 3 HOH A 92 392 105 HOH HOH . C 3 HOH A 93 393 111 HOH HOH . C 3 HOH A 94 394 171 HOH HOH . C 3 HOH A 95 395 86 HOH HOH . C 3 HOH A 96 396 47 HOH HOH . C 3 HOH A 97 397 17 HOH HOH . C 3 HOH A 98 398 37 HOH HOH . C 3 HOH A 99 399 30 HOH HOH . C 3 HOH A 100 400 102 HOH HOH . C 3 HOH A 101 401 148 HOH HOH . C 3 HOH A 102 402 69 HOH HOH . C 3 HOH A 103 403 119 HOH HOH . C 3 HOH A 104 404 66 HOH HOH . C 3 HOH A 105 405 78 HOH HOH . C 3 HOH A 106 406 40 HOH HOH . C 3 HOH A 107 407 51 HOH HOH . C 3 HOH A 108 408 167 HOH HOH . C 3 HOH A 109 409 16 HOH HOH . C 3 HOH A 110 410 61 HOH HOH . C 3 HOH A 111 411 59 HOH HOH . C 3 HOH A 112 412 10 HOH HOH . C 3 HOH A 113 413 87 HOH HOH . C 3 HOH A 114 414 147 HOH HOH . C 3 HOH A 115 415 25 HOH HOH . C 3 HOH A 116 416 15 HOH HOH . C 3 HOH A 117 417 24 HOH HOH . C 3 HOH A 118 418 91 HOH HOH . C 3 HOH A 119 419 118 HOH HOH . C 3 HOH A 120 420 14 HOH HOH . C 3 HOH A 121 421 41 HOH HOH . C 3 HOH A 122 422 49 HOH HOH . C 3 HOH A 123 423 139 HOH HOH . C 3 HOH A 124 424 136 HOH HOH . C 3 HOH A 125 425 72 HOH HOH . C 3 HOH A 126 426 85 HOH HOH . C 3 HOH A 127 427 116 HOH HOH . C 3 HOH A 128 428 60 HOH HOH . C 3 HOH A 129 429 114 HOH HOH . C 3 HOH A 130 430 82 HOH HOH . C 3 HOH A 131 431 149 HOH HOH . C 3 HOH A 132 432 179 HOH HOH . C 3 HOH A 133 433 141 HOH HOH . C 3 HOH A 134 434 157 HOH HOH . C 3 HOH A 135 435 77 HOH HOH . C 3 HOH A 136 436 145 HOH HOH . C 3 HOH A 137 437 126 HOH HOH . C 3 HOH A 138 438 65 HOH HOH . C 3 HOH A 139 439 131 HOH HOH . C 3 HOH A 140 440 132 HOH HOH . C 3 HOH A 141 441 127 HOH HOH . C 3 HOH A 142 442 128 HOH HOH . C 3 HOH A 143 443 163 HOH HOH . C 3 HOH A 144 444 135 HOH HOH . C 3 HOH A 145 445 35 HOH HOH . C 3 HOH A 146 446 89 HOH HOH . C 3 HOH A 147 447 174 HOH HOH . C 3 HOH A 148 448 68 HOH HOH . C 3 HOH A 149 449 173 HOH HOH . C 3 HOH A 150 450 146 HOH HOH . C 3 HOH A 151 451 130 HOH HOH . C 3 HOH A 152 452 175 HOH HOH . C 3 HOH A 153 453 154 HOH HOH . C 3 HOH A 154 454 162 HOH HOH . C 3 HOH A 155 455 109 HOH HOH . C 3 HOH A 156 456 112 HOH HOH . C 3 HOH A 157 457 129 HOH HOH . C 3 HOH A 158 458 169 HOH HOH . C 3 HOH A 159 459 54 HOH HOH . C 3 HOH A 160 460 125 HOH HOH . C 3 HOH A 161 461 133 HOH HOH . C 3 HOH A 162 462 176 HOH HOH . C 3 HOH A 163 463 96 HOH HOH . C 3 HOH A 164 464 93 HOH HOH . C 3 HOH A 165 465 150 HOH HOH . C 3 HOH A 166 466 153 HOH HOH . C 3 HOH A 167 467 155 HOH HOH . C 3 HOH A 168 468 159 HOH HOH . C 3 HOH A 169 469 143 HOH HOH . C 3 HOH A 170 470 142 HOH HOH . C 3 HOH A 171 471 178 HOH HOH . C 3 HOH A 172 472 156 HOH HOH . C 3 HOH A 173 473 161 HOH HOH . C 3 HOH A 174 474 152 HOH HOH . C 3 HOH A 175 475 99 HOH HOH . C 3 HOH A 176 476 123 HOH HOH . C 3 HOH A 177 477 181 HOH HOH . C 3 HOH A 178 478 165 HOH HOH . C 3 HOH A 179 479 180 HOH HOH . C 3 HOH A 180 480 151 HOH HOH . C 3 HOH A 181 481 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C6X . . . B 2 24.685 29.87 36.112 1 10.18 ? C1 C6X 201 A 1 HETATM 2 C C10 C6X . . . B 2 24.809 32.055 37.445 1 8.04 ? C10 C6X 201 A 1 HETATM 3 C C12 C6X . . . B 2 22.813 31.514 38.728 1 7.88 ? C12 C6X 201 A 1 HETATM 4 C C13 C6X . . . B 2 22.138 30.501 39.463 1 6.96 ? C13 C6X 201 A 1 HETATM 5 C C14 C6X . . . B 2 20.744 30.267 39.232 1 7.27 ? C14 C6X 201 A 1 HETATM 6 C C15 C6X . . . B 2 20.005 31.025 38.359 1 7.83 ? C15 C6X 201 A 1 HETATM 7 C C16 C6X . . . B 2 20.686 32.039 37.66 1 9.79 ? C16 C6X 201 A 1 HETATM 8 C C17 C6X . . . B 2 22.032 32.295 37.897 1 7.99 ? C17 C6X 201 A 1 HETATM 9 C C18 C6X . . . B 2 25.076 31.397 39.804 1 8.57 ? C18 C6X 201 A 1 HETATM 10 C C2 C6X . . . B 2 24.416 31.229 36.22 1 8.04 ? C2 C6X 201 A 1 HETATM 11 C C20 C6X . . . B 2 27.285 31.893 40.48 1 10.62 ? C20 C6X 201 A 1 HETATM 12 C C21 C6X . . . B 2 27.224 30.917 41.456 1 11.63 ? C21 C6X 201 A 1 HETATM 13 C C22 C6X . . . B 2 26.016 30.206 41.673 1 8.62 ? C22 C6X 201 A 1 HETATM 14 C C23 C6X . . . B 2 24.934 30.365 40.831 1 7.66 ? C23 C6X 201 A 1 HETATM 15 C C24 C6X . . . B 2 22.514 29.543 40.443 1 6.69 ? C24 C6X 201 A 1 HETATM 16 C C26 C6X . . . B 2 20.418 29.117 40.078 1 6.67 ? C26 C6X 201 A 1 HETATM 17 C C28 C6X . . . B 2 21.515 27.608 41.761 1 8.55 ? C28 C6X 201 A 1 HETATM 18 C C29 C6X . . . B 2 23.786 29.488 41.076 1 7.69 ? C29 C6X 201 A 1 HETATM 19 C C3 C6X . . . B 2 23.819 31.846 35.16 1 9.67 ? C3 C6X 201 A 1 HETATM 20 C C4 C6X . . . B 2 23.436 31.139 34.006 1 10.94 ? C4 C6X 201 A 1 HETATM 21 C C5 C6X . . . B 2 23.7 29.796 33.922 1 10.84 ? C5 C6X 201 A 1 HETATM 22 C C6 C6X . . . B 2 24.327 29.177 34.951 1 9.36 ? C6 C6X 201 A 1 HETATM 23 C C7 C6X . . . B 2 22.779 31.845 32.835 1 11.47 ? C7 C6X 201 A 1 HETATM 24 N N11 C6X . . . B 2 24.197 31.632 38.769 1 8.82 ? N11 C6X 201 A 1 HETATM 25 N N19 C6X . . . B 2 26.232 32.1 39.705 1 8.42 ? N19 C6X 201 A 1 HETATM 26 N N25 C6X . . . B 2 21.483 28.737 40.786 1 7.53 ? N25 C6X 201 A 1 HETATM 27 N N9 C6X . . . B 2 21.764 32.691 33.011 1 12.92 ? N9 C6X 201 A 1 HETATM 28 O O27 C6X . . . B 2 19.22 28.587 40.152 1 8.07 ? O27 C6X 201 A 1 HETATM 29 O O8 C6X . . . B 2 23.206 31.612 31.69 1 14.54 ? O8 C6X 201 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #