data_6JJ9 # _model_server_result.job_id mQ1wsVIcIDjmuxpqlidUYA _model_server_result.datetime_utc '2024-10-20 07:32:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":604}' # _entry.id 6JJ9 # _exptl.entry_id 6JJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JJ9 _cell.length_a 131.12 _cell.length_b 131.12 _cell.length_c 186.192 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G 1 1 B,H,I,J,K 2 1 C,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 K N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2A ADP . C ADP 601 1_555 F MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 H O1A ADP . A ADP 601 1_555 J MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 C OE1 GLU 98 E GLU 136 1_555 N MG MG . E MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc4 L O2A ADP . E ADP 601 1_555 N MG MG . E MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 114 n n C2 C1 BGC sing 115 n n C2 O2 BGC sing 116 n n C2 H2 BGC sing 117 n n C3 C4 BGC sing 118 n n C3 O3 BGC sing 119 n n C3 H3 BGC sing 120 n n C4 C5 BGC sing 121 n n C4 O4 BGC sing 122 n n C4 H4 BGC sing 123 n n C5 C6 BGC sing 124 n n C5 O5 BGC sing 125 n n C5 H5 BGC sing 126 n n C6 O6 BGC sing 127 n n C6 H61 BGC sing 128 n n C6 H62 BGC sing 129 n n C1 O1 BGC sing 130 n n C1 O5 BGC sing 131 n n C1 H1 BGC sing 132 n n O1 HO1 BGC sing 133 n n O2 HO2 BGC sing 134 n n O3 HO3 BGC sing 135 n n O4 HO4 BGC sing 136 n n O6 HO6 BGC sing 137 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6JJ9 _atom_sites.fract_transf_matrix[1][1] 0.007627 _atom_sites.fract_transf_matrix[1][2] 0.004403 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ADP C 1 601 602 ADP ADP . E 3 PO4 C 1 602 919 PO4 PO4 . F 4 MG C 1 603 1 MG MG . G 5 BGC C 1 604 1 BGC BGC . H 2 ADP A 1 601 602 ADP ADP . I 3 PO4 A 1 602 919 PO4 PO4 . J 4 MG A 1 603 2 MG MG . K 5 BGC A 1 604 1 BGC BGC . L 2 ADP E 1 601 602 ADP ADP . M 3 PO4 E 1 602 919 PO4 PO4 . N 4 MG E 1 603 3 MG MG . O 5 BGC E 1 604 1 BGC BGC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . O 5 85.919 142.976 58.777 1 18.98 ? C2 BGC 604 E 1 HETATM 2 C C3 BGC . . . O 5 86.394 141.853 59.613 1 22.74 ? C3 BGC 604 E 1 HETATM 3 C C4 BGC . . . O 5 86.229 142.133 61.077 1 19.98 ? C4 BGC 604 E 1 HETATM 4 C C5 BGC . . . O 5 84.817 142.606 61.434 1 20.13 ? C5 BGC 604 E 1 HETATM 5 C C6 BGC . . . O 5 84.797 143.084 62.853 1 20.39 ? C6 BGC 604 E 1 HETATM 6 C C1 BGC . . . O 5 84.476 143.29 59.114 1 19.18 ? C1 BGC 604 E 1 HETATM 7 O O1 BGC . . . O 5 84.026 144.307 58.333 1 25.8 ? O1 BGC 604 E 1 HETATM 8 O O2 BGC . . . O 5 86.01 142.599 57.393 1 18.8 ? O2 BGC 604 E 1 HETATM 9 O O3 BGC . . . O 5 87.799 141.619 59.321 1 23.55 ? O3 BGC 604 E 1 HETATM 10 O O4 BGC . . . O 5 86.492 140.928 61.793 1 20.75 ? O4 BGC 604 E 1 HETATM 11 O O5 BGC . . . O 5 84.348 143.683 60.553 1 25.83 ? O5 BGC 604 E 1 HETATM 12 O O6 BGC . . . O 5 84.847 144.486 62.895 1 30.58 ? O6 BGC 604 E 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #