data_6JJI # _model_server_result.job_id twiTIgB12MToeqr1AD72cQ _model_server_result.datetime_utc '2024-11-26 07:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 6JJI # _exptl.entry_id 6JJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.826 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JJI _cell.length_a 23.509 _cell.length_b 29.244 _cell.length_c 57.557 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 G 1 B G 1 1_555 D K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 A O6 G 1 B G 1 1_555 D K K . B K 103 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A O6 G 2 B G 2 1_555 C K K . B K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc4 A O6 G 2 B G 2 1_555 C K K . B K 102 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc5 A O6 G 2 B G 2 1_555 D K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 A O6 G 2 B G 2 1_555 D K K . B K 103 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc7 A O6 G 6 B G 6 1_555 D K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc8 A O6 G 6 B G 6 1_555 D K K . B K 103 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc9 A O6 G 7 B G 7 1_555 C K K . B K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc10 A O6 G 7 B G 7 1_555 C K K . B K 102 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc11 A O6 G 7 B G 7 1_555 D K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc12 A O6 G 7 B G 7 1_555 D K K . B K 103 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc13 A O6 G 9 B G 9 1_555 B K K . B K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc14 A O6 G 9 B G 9 1_555 B K K . B K 101 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc15 A O6 G 9 B G 9 1_555 C K K . B K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc16 A O6 G 9 B G 9 1_555 C K K . B K 102 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc17 A O6 G 10 B G 10 1_555 B K K . B K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc18 A O6 G 10 B G 10 1_555 B K K . B K 101 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc19 A O6 G 12 B G 12 1_555 B K K . B K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc20 A O6 G 12 B G 12 1_555 B K K . B K 101 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc21 A O6 G 12 B G 12 1_555 C K K . B K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc22 A O6 G 12 B G 12 1_555 C K K . B K 102 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc23 A O6 G 13 B G 13 1_555 B K K . B K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc24 A O6 G 13 B G 13 1_555 B K K . B K 101 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? hydrog TYPE_6_PAIR hydrog1 A N1 G 1 B G 1 1_555 A O6 G 6 B G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 G 1 B G 1 1_555 A N7 G 6 B G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N1 G 2 B G 2 1_555 A O6 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A N2 G 2 B G 2 1_555 A N7 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 G 9 B G 9 1_555 A O6 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 G 9 B G 9 1_555 A N7 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N1 G 10 B G 10 1_555 A O6 G 13 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A N2 G 10 B G 10 1_555 A N7 G 13 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C44 H38 N8 4' _chem_comp.formula_weight 678.826 _chem_comp.id POH _chem_comp.mon_nstd_flag . _chem_comp.name (1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TMPyP4 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CX3 CXD POH doub 116 n y CX3 NXT POH sing 117 n y C2A C3A POH doub 118 n y C2A C1A POH sing 119 n y C71 C81 POH doub 120 n y C71 CXD POH sing 121 n y C71 CHB POH sing 122 n y C81 C91 POH sing 123 n y C91 NXT POH doub 124 n y CXN NXT POH sing 125 n n C3A C4A POH sing 126 n y C4A NA POH sing 127 n y C4A CHB POH doub 128 n y C1A NA POH sing 129 n y C1A CHA POH doub 130 n y NB C1B POH doub 131 n y NB C4B POH sing 132 n y NC C1C POH sing 133 n y NC C4C POH sing 134 n y ND C1D POH sing 135 n y ND C4D POH doub 136 n y CHB C1B POH sing 137 n y C1B C2B POH sing 138 n y CX4 CXE POH doub 139 n y CX4 NXU POH sing 140 n y C2B C3B POH doub 141 n y C72 C82 POH doub 142 n y C72 CXE POH sing 143 n y C72 CHC POH sing 144 n y C82 C92 POH sing 145 n y C92 NXU POH doub 146 n y CXO NXU POH sing 147 n n C3B C4B POH sing 148 n y C4B CHC POH doub 149 n y CHC C1C POH sing 150 n y C1C C2C POH doub 151 n y CX5 CXF POH doub 152 n y CX5 NXV POH sing 153 n y C2C C3C POH sing 154 n y C73 C83 POH doub 155 n y C73 CXF POH sing 156 n y C73 CHD POH sing 157 n y C83 C93 POH sing 158 n y C93 NXV POH doub 159 n y CXP NXV POH sing 160 n n C3C C4C POH doub 161 n y C4C CHD POH sing 162 n y CHD C1D POH doub 163 n y C1D C2D POH sing 164 n y CX6 CXG POH sing 165 n y CX6 NXW POH doub 166 n y C2D C3D POH doub 167 n y C74 C84 POH sing 168 n y C74 CXG POH doub 169 n y C74 CHA POH sing 170 n y C84 C94 POH doub 171 n y C94 NXW POH sing 172 n y CXQ NXW POH sing 173 n n C3D C4D POH sing 174 n y C4D CHA POH sing 175 n y CX3 H51 POH sing 176 n n C2A H11 POH sing 177 n n C81 H31 POH sing 178 n n C91 H41 POH sing 179 n n CXN H811 POH sing 180 n n CXN H821 POH sing 181 n n CXN H831 POH sing 182 n n C3A H21 POH sing 183 n n CXD H61 POH sing 184 n n NA H71 POH sing 185 n n NC H73 POH sing 186 n n CX4 H52 POH sing 187 n n C2B H12 POH sing 188 n n C82 H32 POH sing 189 n n C92 H42 POH sing 190 n n CXO H812 POH sing 191 n n CXO H822 POH sing 192 n n CXO H832 POH sing 193 n n C3B H22 POH sing 194 n n CXE H62 POH sing 195 n n CX5 H53 POH sing 196 n n C2C H13 POH sing 197 n n C83 H33 POH sing 198 n n C93 H43 POH sing 199 n n CXP H813 POH sing 200 n n CXP H823 POH sing 201 n n CXP H833 POH sing 202 n n C3C H23 POH sing 203 n n CXF H63 POH sing 204 n n CX6 H54 POH sing 205 n n C2D H14 POH sing 206 n n C84 H34 POH sing 207 n n C94 H44 POH sing 208 n n CXQ H814 POH sing 209 n n CXQ H824 POH sing 210 n n CXQ H834 POH sing 211 n n C3D H24 POH sing 212 n n CXG H64 POH sing 213 n n # _atom_sites.entry_id 6JJI _atom_sites.fract_transf_matrix[1][1] 0.042537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K B 1 101 1 K K . C 2 K B 1 102 2 K K . D 2 K B 1 103 3 K K . E 3 POH B 1 104 1 POH POH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CX3 POH . . . E 3 0.769 5.367 3.82 0.5 61.85 ? CX3 POH 104 B 1 HETATM 2 C C2A POH . . . E 3 -0.731 4.615 -1.194 0.5 76.72 ? C2A POH 104 B 1 HETATM 3 C C71 POH . . . E 3 -0.329 3.574 2.693 0.5 76.7 ? C71 POH 104 B 1 HETATM 4 C C81 POH . . . E 3 -1.46 3.865 3.391 0.5 77.15 ? C81 POH 104 B 1 HETATM 5 C C91 POH . . . E 3 -1.478 4.912 4.3 0.5 71.11 ? C91 POH 104 B 1 HETATM 6 C CXN POH . . . E 3 -0.321 6.759 5.442 0.5 56.29 ? CXN POH 104 B 1 HETATM 7 C C3A POH . . . E 3 -0.78 4.504 0.154 0.5 82.41 ? C3A POH 104 B 1 HETATM 8 C C4A POH . . . E 3 -0.42 3.215 0.476 0.5 89.45 ? C4A POH 104 B 1 HETATM 9 C C1A POH . . . E 3 -0.346 3.397 -1.717 0.5 81.71 ? C1A POH 104 B 1 HETATM 10 C CXD POH . . . E 3 0.789 4.314 2.911 0.5 70.18 ? CXD POH 104 B 1 HETATM 11 N NXT POH . . . E 3 -0.367 5.65 4.504 0.5 63.93 ? NXT POH 104 B 1 HETATM 12 N NA POH . . . E 3 -0.171 2.563 -0.678 0.5 85 ? NA POH 104 B 1 HETATM 13 N NB POH . . . E 3 -0.475 0.058 1.952 0.5 66.84 ? NB POH 104 B 1 HETATM 14 N NC POH . . . E 3 -0.977 -2.3 -0.1 0.5 90.51 ? NC POH 104 B 1 HETATM 15 N ND POH . . . E 3 -0.133 0.352 -2.66 0.5 68.86 ? ND POH 104 B 1 HETATM 16 C CHB POH . . . E 3 -0.315 2.511 1.786 0.5 83.39 ? CHB POH 104 B 1 HETATM 17 C C1B POH . . . E 3 -0.333 1.246 2.567 0.5 74.32 ? C1B POH 104 B 1 HETATM 18 C CX4 POH . . . E 3 0.14 -5.769 3.719 0.5 73.52 ? CX4 POH 104 B 1 HETATM 19 C C2B POH . . . E 3 -0.22 1.019 3.918 0.5 74.67 ? C2B POH 104 B 1 HETATM 20 C C72 POH . . . E 3 -0.513 -3.517 3.315 0.5 78.6 ? C72 POH 104 B 1 HETATM 21 C C82 POH . . . E 3 -1.033 -3.474 4.571 0.5 80.39 ? C82 POH 104 B 1 HETATM 22 C C92 POH . . . E 3 -0.97 -4.58 5.406 0.5 72.86 ? C92 POH 104 B 1 HETATM 23 C CXO POH . . . E 3 -0.318 -6.878 5.85 0.5 63.88 ? CXO POH 104 B 1 HETATM 24 C C3B POH . . . E 3 -0.299 -0.316 4.115 0.5 74.28 ? C3B POH 104 B 1 HETATM 25 C C4B POH . . . E 3 -0.463 -0.906 2.878 0.5 73.35 ? C4B POH 104 B 1 HETATM 26 C CXE POH . . . E 3 0.077 -4.661 2.879 0.5 75.7 ? CXE POH 104 B 1 HETATM 27 N NXU POH . . . E 3 -0.383 -5.716 4.97 0.5 71.65 ? NXU POH 104 B 1 HETATM 28 C CHC POH . . . E 3 -0.599 -2.383 2.516 0.5 81.84 ? CHC POH 104 B 1 HETATM 29 C C1C POH . . . E 3 -0.181 -2.391 1.005 0.5 87.9 ? C1C POH 104 B 1 HETATM 30 C CX5 POH . . . E 3 -0.816 -5.951 -2.628 0.5 56.18 ? CX5 POH 104 B 1 HETATM 31 C C2C POH . . . E 3 1.103 -2.429 0.553 0.5 84.6 ? C2C POH 104 B 1 HETATM 32 C C73 POH . . . E 3 -0.644 -3.615 -3.075 0.5 70.03 ? C73 POH 104 B 1 HETATM 33 C C83 POH . . . E 3 -0.452 -3.914 -4.389 0.5 62.86 ? C83 POH 104 B 1 HETATM 34 C C93 POH . . . E 3 -0.432 -5.231 -4.827 0.5 55.47 ? C93 POH 104 B 1 HETATM 35 C CXP POH . . . E 3 -0.599 -7.616 -4.4 0.5 47.85 ? CXP POH 104 B 1 HETATM 36 C C3C POH . . . E 3 1.096 -2.395 -0.795 0.5 83.65 ? C3C POH 104 B 1 HETATM 37 C C4C POH . . . E 3 -0.202 -2.326 -1.221 0.5 81.49 ? C4C POH 104 B 1 HETATM 38 C CXF POH . . . E 3 -0.836 -4.629 -2.189 0.5 71.46 ? CXF POH 104 B 1 HETATM 39 N NXV POH . . . E 3 -0.615 -6.235 -3.938 0.5 53.52 ? NXV POH 104 B 1 HETATM 40 C CHD POH . . . E 3 -0.664 -2.248 -2.736 0.5 72.27 ? CHD POH 104 B 1 HETATM 41 C C1D POH . . . E 3 -0.8 -0.732 -3.155 0.5 69.34 ? C1D POH 104 B 1 HETATM 42 C CX6 POH . . . E 3 -1.486 5.51 -5.432 0.5 67.12 ? CX6 POH 104 B 1 HETATM 43 C C2D POH . . . E 3 -1.647 -0.304 -4.148 0.5 71.05 ? C2D POH 104 B 1 HETATM 44 C C74 POH . . . E 3 -0.253 4.153 -3.906 0.5 75.44 ? C74 POH 104 B 1 HETATM 45 C C84 POH . . . E 3 0.737 5.084 -3.917 0.5 73.63 ? C84 POH 104 B 1 HETATM 46 C C94 POH . . . E 3 0.61 6.24 -4.674 0.5 67.94 ? C94 POH 104 B 1 HETATM 47 C CXQ POH . . . E 3 -0.633 7.649 -6.215 0.5 62.25 ? CXQ POH 104 B 1 HETATM 48 C C3D POH . . . E 3 -1.514 1.032 -4.261 0.5 71.56 ? C3D POH 104 B 1 HETATM 49 C C4D POH . . . E 3 -0.579 1.453 -3.343 0.5 73.78 ? C4D POH 104 B 1 HETATM 50 C CXG POH . . . E 3 -1.357 4.355 -4.672 0.5 75.63 ? CXG POH 104 B 1 HETATM 51 C CHA POH . . . E 3 -0.141 2.97 -3.165 0.5 77.55 ? CHA POH 104 B 1 HETATM 52 N NXW POH . . . E 3 -0.499 6.437 -5.422 0.5 66.18 ? NXW POH 104 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #