data_6JKI # _model_server_result.job_id rX9DGfFAWL51xpyzTMOPgQ _model_server_result.datetime_utc '2024-12-22 06:33:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":504}' # _entry.id 6JKI # _exptl.entry_id 6JKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JKI _cell.length_a 85.67 _cell.length_b 85.67 _cell.length_c 147.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C N SFG . A SFG 301 1_555 T MN MN . B MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 H N SFG . A SFG 306 1_555 I MN MN . A MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc3 B OD2 ASP 180 B ASP 182 1_555 T MN MN . B MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6JKI _atom_sites.fract_transf_matrix[1][1] 0.011673 _atom_sites.fract_transf_matrix[1][2] 0.006739 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SFG A 1 301 400 SFG SFG . D 3 GOL A 1 302 601 GOL GOL . E 3 GOL A 1 303 701 GOL GOL . F 3 GOL A 1 304 801 GOL GOL . G 3 GOL A 1 305 901 GOL GOL . H 2 SFG A 1 306 400 SFG SFG . I 4 MN A 1 307 2 MN MN . J 4 MN A 1 308 3 MN MN . K 5 NA A 1 309 1 NA NA . L 6 PEG B 1 501 501 PEG PEG . M 3 GOL B 1 502 501 GOL GOL . N 3 GOL B 1 503 601 GOL GOL . O 3 GOL B 1 504 701 GOL GOL . P 6 PEG B 1 505 901 PEG PEG . Q 3 GOL B 1 506 1001 GOL GOL . R 3 GOL B 1 507 1101 GOL GOL . S 3 GOL B 1 508 1201 GOL GOL . T 4 MN B 1 509 1 MN MN . U 5 NA B 1 510 2 NA NA . V 7 HOH A 1 401 152 HOH HOH . V 7 HOH A 2 402 142 HOH HOH . V 7 HOH A 3 403 138 HOH HOH . V 7 HOH A 4 404 4 HOH HOH . V 7 HOH A 5 405 135 HOH HOH . V 7 HOH A 6 406 125 HOH HOH . V 7 HOH A 7 407 140 HOH HOH . V 7 HOH A 8 408 137 HOH HOH . V 7 HOH A 9 409 2 HOH HOH . V 7 HOH A 10 410 86 HOH HOH . V 7 HOH A 11 411 139 HOH HOH . V 7 HOH A 12 412 5 HOH HOH . V 7 HOH A 13 413 126 HOH HOH . V 7 HOH A 14 414 27 HOH HOH . V 7 HOH A 15 415 115 HOH HOH . V 7 HOH A 16 416 129 HOH HOH . V 7 HOH A 17 417 68 HOH HOH . V 7 HOH A 18 418 79 HOH HOH . V 7 HOH A 19 419 124 HOH HOH . V 7 HOH A 20 420 134 HOH HOH . V 7 HOH A 21 421 74 HOH HOH . V 7 HOH A 22 422 150 HOH HOH . V 7 HOH A 23 423 42 HOH HOH . V 7 HOH A 24 424 80 HOH HOH . V 7 HOH A 25 425 17 HOH HOH . V 7 HOH A 26 426 106 HOH HOH . V 7 HOH A 27 427 82 HOH HOH . V 7 HOH A 28 428 143 HOH HOH . V 7 HOH A 29 429 48 HOH HOH . V 7 HOH A 30 430 9 HOH HOH . V 7 HOH A 31 431 123 HOH HOH . V 7 HOH A 32 432 100 HOH HOH . V 7 HOH A 33 433 63 HOH HOH . V 7 HOH A 34 434 45 HOH HOH . V 7 HOH A 35 435 92 HOH HOH . V 7 HOH A 36 436 47 HOH HOH . V 7 HOH A 37 437 28 HOH HOH . V 7 HOH A 38 438 180 HOH HOH . V 7 HOH A 39 439 12 HOH HOH . V 7 HOH A 40 440 14 HOH HOH . V 7 HOH A 41 441 81 HOH HOH . V 7 HOH A 42 442 11 HOH HOH . V 7 HOH A 43 443 175 HOH HOH . V 7 HOH A 44 444 93 HOH HOH . V 7 HOH A 45 445 149 HOH HOH . V 7 HOH A 46 446 76 HOH HOH . V 7 HOH A 47 447 24 HOH HOH . V 7 HOH A 48 448 57 HOH HOH . V 7 HOH A 49 449 31 HOH HOH . V 7 HOH A 50 450 67 HOH HOH . V 7 HOH A 51 451 71 HOH HOH . V 7 HOH A 52 452 102 HOH HOH . V 7 HOH A 53 453 170 HOH HOH . V 7 HOH A 54 454 75 HOH HOH . V 7 HOH A 55 455 34 HOH HOH . V 7 HOH A 56 456 53 HOH HOH . V 7 HOH A 57 457 26 HOH HOH . V 7 HOH A 58 458 136 HOH HOH . V 7 HOH A 59 459 133 HOH HOH . V 7 HOH A 60 460 46 HOH HOH . V 7 HOH A 61 461 111 HOH HOH . V 7 HOH A 62 462 172 HOH HOH . V 7 HOH A 63 463 122 HOH HOH . V 7 HOH A 64 464 128 HOH HOH . W 7 HOH B 1 601 70 HOH HOH . W 7 HOH B 2 602 178 HOH HOH . W 7 HOH B 3 603 163 HOH HOH . W 7 HOH B 4 604 131 HOH HOH . W 7 HOH B 5 605 164 HOH HOH . W 7 HOH B 6 606 41 HOH HOH . W 7 HOH B 7 607 145 HOH HOH . W 7 HOH B 8 608 155 HOH HOH . W 7 HOH B 9 609 179 HOH HOH . W 7 HOH B 10 610 30 HOH HOH . W 7 HOH B 11 611 69 HOH HOH . W 7 HOH B 12 612 89 HOH HOH . W 7 HOH B 13 613 15 HOH HOH . W 7 HOH B 14 614 22 HOH HOH . W 7 HOH B 15 615 25 HOH HOH . W 7 HOH B 16 616 88 HOH HOH . W 7 HOH B 17 617 23 HOH HOH . W 7 HOH B 18 618 58 HOH HOH . W 7 HOH B 19 619 160 HOH HOH . W 7 HOH B 20 620 19 HOH HOH . W 7 HOH B 21 621 177 HOH HOH . W 7 HOH B 22 622 6 HOH HOH . W 7 HOH B 23 623 166 HOH HOH . W 7 HOH B 24 624 1 HOH HOH . W 7 HOH B 25 625 7 HOH HOH . W 7 HOH B 26 626 114 HOH HOH . W 7 HOH B 27 627 85 HOH HOH . W 7 HOH B 28 628 50 HOH HOH . W 7 HOH B 29 629 13 HOH HOH . W 7 HOH B 30 630 60 HOH HOH . W 7 HOH B 31 631 65 HOH HOH . W 7 HOH B 32 632 29 HOH HOH . W 7 HOH B 33 633 8 HOH HOH . W 7 HOH B 34 634 84 HOH HOH . W 7 HOH B 35 635 21 HOH HOH . W 7 HOH B 36 636 94 HOH HOH . W 7 HOH B 37 637 32 HOH HOH . W 7 HOH B 38 638 95 HOH HOH . W 7 HOH B 39 639 116 HOH HOH . W 7 HOH B 40 640 3 HOH HOH . W 7 HOH B 41 641 101 HOH HOH . W 7 HOH B 42 642 36 HOH HOH . W 7 HOH B 43 643 20 HOH HOH . W 7 HOH B 44 644 56 HOH HOH . W 7 HOH B 45 645 66 HOH HOH . W 7 HOH B 46 646 33 HOH HOH . W 7 HOH B 47 647 49 HOH HOH . W 7 HOH B 48 648 130 HOH HOH . W 7 HOH B 49 649 96 HOH HOH . W 7 HOH B 50 650 77 HOH HOH . W 7 HOH B 51 651 16 HOH HOH . W 7 HOH B 52 652 173 HOH HOH . W 7 HOH B 53 653 44 HOH HOH . W 7 HOH B 54 654 55 HOH HOH . W 7 HOH B 55 655 18 HOH HOH . W 7 HOH B 56 656 119 HOH HOH . W 7 HOH B 57 657 72 HOH HOH . W 7 HOH B 58 658 103 HOH HOH . W 7 HOH B 59 659 127 HOH HOH . W 7 HOH B 60 660 38 HOH HOH . W 7 HOH B 61 661 105 HOH HOH . W 7 HOH B 62 662 78 HOH HOH . W 7 HOH B 63 663 39 HOH HOH . W 7 HOH B 64 664 73 HOH HOH . W 7 HOH B 65 665 107 HOH HOH . W 7 HOH B 66 666 109 HOH HOH . W 7 HOH B 67 667 171 HOH HOH . W 7 HOH B 68 668 91 HOH HOH . W 7 HOH B 69 669 54 HOH HOH . W 7 HOH B 70 670 99 HOH HOH . W 7 HOH B 71 671 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 3 -40.858 10.597 10.105 1 76.08 ? C1 GOL 504 B 1 HETATM 2 O O1 GOL . . . O 3 -42.275 10.648 10.112 1 74.94 ? O1 GOL 504 B 1 HETATM 3 C C2 GOL . . . O 3 -40.282 11.65 9.185 1 76.15 ? C2 GOL 504 B 1 HETATM 4 O O2 GOL . . . O 3 -38.9 11.859 9.505 1 78.27 ? O2 GOL 504 B 1 HETATM 5 C C3 GOL . . . O 3 -41.034 12.954 9.295 1 73.01 ? C3 GOL 504 B 1 HETATM 6 O O3 GOL . . . O 3 -40.979 13.411 10.638 1 73.13 ? O3 GOL 504 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #