data_6JKI
#
_model_server_result.job_id            M-Wu5lviuu1pKHMoANCtlA 
_model_server_result.datetime_utc      '2024-12-22 06:13:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6jki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":510}' 
#
_entry.id    6JKI 
#
_exptl.entry_id    6JKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6JKI 
_cell.length_a            85.67 
_cell.length_b            85.67 
_cell.length_c            147.6 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6JKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C N SFG . A SFG 301 1_555 T MN MN . B MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc2 H N SFG . A SFG 306 1_555 I MN MN . A MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc3 B OD2 ASP 180 B ASP 182 1_555 T MN MN . B MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6JKI 
_atom_sites.fract_transf_matrix[1][1]    0.011673 
_atom_sites.fract_transf_matrix[1][2]    0.006739 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SFG A 1 301 400 SFG SFG . 
D 3 GOL A 1 302 601 GOL GOL . 
E 3 GOL A 1 303 701 GOL GOL . 
F 3 GOL A 1 304 801 GOL GOL . 
G 3 GOL A 1 305 901 GOL GOL . 
H 2 SFG A 1 306 400 SFG SFG . 
I 4 MN A 1 307 2 MN MN . 
J 4 MN A 1 308 3 MN MN . 
K 5 NA A 1 309 1 NA NA . 
L 6 PEG B 1 501 501 PEG PEG . 
M 3 GOL B 1 502 501 GOL GOL . 
N 3 GOL B 1 503 601 GOL GOL . 
O 3 GOL B 1 504 701 GOL GOL . 
P 6 PEG B 1 505 901 PEG PEG . 
Q 3 GOL B 1 506 1001 GOL GOL . 
R 3 GOL B 1 507 1101 GOL GOL . 
S 3 GOL B 1 508 1201 GOL GOL . 
T 4 MN B 1 509 1 MN MN . 
U 5 NA B 1 510 2 NA NA . 
V 7 HOH A 1 401 152 HOH HOH . 
V 7 HOH A 2 402 142 HOH HOH . 
V 7 HOH A 3 403 138 HOH HOH . 
V 7 HOH A 4 404 4 HOH HOH . 
V 7 HOH A 5 405 135 HOH HOH . 
V 7 HOH A 6 406 125 HOH HOH . 
V 7 HOH A 7 407 140 HOH HOH . 
V 7 HOH A 8 408 137 HOH HOH . 
V 7 HOH A 9 409 2 HOH HOH . 
V 7 HOH A 10 410 86 HOH HOH . 
V 7 HOH A 11 411 139 HOH HOH . 
V 7 HOH A 12 412 5 HOH HOH . 
V 7 HOH A 13 413 126 HOH HOH . 
V 7 HOH A 14 414 27 HOH HOH . 
V 7 HOH A 15 415 115 HOH HOH . 
V 7 HOH A 16 416 129 HOH HOH . 
V 7 HOH A 17 417 68 HOH HOH . 
V 7 HOH A 18 418 79 HOH HOH . 
V 7 HOH A 19 419 124 HOH HOH . 
V 7 HOH A 20 420 134 HOH HOH . 
V 7 HOH A 21 421 74 HOH HOH . 
V 7 HOH A 22 422 150 HOH HOH . 
V 7 HOH A 23 423 42 HOH HOH . 
V 7 HOH A 24 424 80 HOH HOH . 
V 7 HOH A 25 425 17 HOH HOH . 
V 7 HOH A 26 426 106 HOH HOH . 
V 7 HOH A 27 427 82 HOH HOH . 
V 7 HOH A 28 428 143 HOH HOH . 
V 7 HOH A 29 429 48 HOH HOH . 
V 7 HOH A 30 430 9 HOH HOH . 
V 7 HOH A 31 431 123 HOH HOH . 
V 7 HOH A 32 432 100 HOH HOH . 
V 7 HOH A 33 433 63 HOH HOH . 
V 7 HOH A 34 434 45 HOH HOH . 
V 7 HOH A 35 435 92 HOH HOH . 
V 7 HOH A 36 436 47 HOH HOH . 
V 7 HOH A 37 437 28 HOH HOH . 
V 7 HOH A 38 438 180 HOH HOH . 
V 7 HOH A 39 439 12 HOH HOH . 
V 7 HOH A 40 440 14 HOH HOH . 
V 7 HOH A 41 441 81 HOH HOH . 
V 7 HOH A 42 442 11 HOH HOH . 
V 7 HOH A 43 443 175 HOH HOH . 
V 7 HOH A 44 444 93 HOH HOH . 
V 7 HOH A 45 445 149 HOH HOH . 
V 7 HOH A 46 446 76 HOH HOH . 
V 7 HOH A 47 447 24 HOH HOH . 
V 7 HOH A 48 448 57 HOH HOH . 
V 7 HOH A 49 449 31 HOH HOH . 
V 7 HOH A 50 450 67 HOH HOH . 
V 7 HOH A 51 451 71 HOH HOH . 
V 7 HOH A 52 452 102 HOH HOH . 
V 7 HOH A 53 453 170 HOH HOH . 
V 7 HOH A 54 454 75 HOH HOH . 
V 7 HOH A 55 455 34 HOH HOH . 
V 7 HOH A 56 456 53 HOH HOH . 
V 7 HOH A 57 457 26 HOH HOH . 
V 7 HOH A 58 458 136 HOH HOH . 
V 7 HOH A 59 459 133 HOH HOH . 
V 7 HOH A 60 460 46 HOH HOH . 
V 7 HOH A 61 461 111 HOH HOH . 
V 7 HOH A 62 462 172 HOH HOH . 
V 7 HOH A 63 463 122 HOH HOH . 
V 7 HOH A 64 464 128 HOH HOH . 
W 7 HOH B 1 601 70 HOH HOH . 
W 7 HOH B 2 602 178 HOH HOH . 
W 7 HOH B 3 603 163 HOH HOH . 
W 7 HOH B 4 604 131 HOH HOH . 
W 7 HOH B 5 605 164 HOH HOH . 
W 7 HOH B 6 606 41 HOH HOH . 
W 7 HOH B 7 607 145 HOH HOH . 
W 7 HOH B 8 608 155 HOH HOH . 
W 7 HOH B 9 609 179 HOH HOH . 
W 7 HOH B 10 610 30 HOH HOH . 
W 7 HOH B 11 611 69 HOH HOH . 
W 7 HOH B 12 612 89 HOH HOH . 
W 7 HOH B 13 613 15 HOH HOH . 
W 7 HOH B 14 614 22 HOH HOH . 
W 7 HOH B 15 615 25 HOH HOH . 
W 7 HOH B 16 616 88 HOH HOH . 
W 7 HOH B 17 617 23 HOH HOH . 
W 7 HOH B 18 618 58 HOH HOH . 
W 7 HOH B 19 619 160 HOH HOH . 
W 7 HOH B 20 620 19 HOH HOH . 
W 7 HOH B 21 621 177 HOH HOH . 
W 7 HOH B 22 622 6 HOH HOH . 
W 7 HOH B 23 623 166 HOH HOH . 
W 7 HOH B 24 624 1 HOH HOH . 
W 7 HOH B 25 625 7 HOH HOH . 
W 7 HOH B 26 626 114 HOH HOH . 
W 7 HOH B 27 627 85 HOH HOH . 
W 7 HOH B 28 628 50 HOH HOH . 
W 7 HOH B 29 629 13 HOH HOH . 
W 7 HOH B 30 630 60 HOH HOH . 
W 7 HOH B 31 631 65 HOH HOH . 
W 7 HOH B 32 632 29 HOH HOH . 
W 7 HOH B 33 633 8 HOH HOH . 
W 7 HOH B 34 634 84 HOH HOH . 
W 7 HOH B 35 635 21 HOH HOH . 
W 7 HOH B 36 636 94 HOH HOH . 
W 7 HOH B 37 637 32 HOH HOH . 
W 7 HOH B 38 638 95 HOH HOH . 
W 7 HOH B 39 639 116 HOH HOH . 
W 7 HOH B 40 640 3 HOH HOH . 
W 7 HOH B 41 641 101 HOH HOH . 
W 7 HOH B 42 642 36 HOH HOH . 
W 7 HOH B 43 643 20 HOH HOH . 
W 7 HOH B 44 644 56 HOH HOH . 
W 7 HOH B 45 645 66 HOH HOH . 
W 7 HOH B 46 646 33 HOH HOH . 
W 7 HOH B 47 647 49 HOH HOH . 
W 7 HOH B 48 648 130 HOH HOH . 
W 7 HOH B 49 649 96 HOH HOH . 
W 7 HOH B 50 650 77 HOH HOH . 
W 7 HOH B 51 651 16 HOH HOH . 
W 7 HOH B 52 652 173 HOH HOH . 
W 7 HOH B 53 653 44 HOH HOH . 
W 7 HOH B 54 654 55 HOH HOH . 
W 7 HOH B 55 655 18 HOH HOH . 
W 7 HOH B 56 656 119 HOH HOH . 
W 7 HOH B 57 657 72 HOH HOH . 
W 7 HOH B 58 658 103 HOH HOH . 
W 7 HOH B 59 659 127 HOH HOH . 
W 7 HOH B 60 660 38 HOH HOH . 
W 7 HOH B 61 661 105 HOH HOH . 
W 7 HOH B 62 662 78 HOH HOH . 
W 7 HOH B 63 663 39 HOH HOH . 
W 7 HOH B 64 664 73 HOH HOH . 
W 7 HOH B 65 665 107 HOH HOH . 
W 7 HOH B 66 666 109 HOH HOH . 
W 7 HOH B 67 667 171 HOH HOH . 
W 7 HOH B 68 668 91 HOH HOH . 
W 7 HOH B 69 669 54 HOH HOH . 
W 7 HOH B 70 670 99 HOH HOH . 
W 7 HOH B 71 671 83 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         U 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -29.404 
_atom_site.Cartn_y               -1.017 
_atom_site.Cartn_z               -48.572 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        75.02 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           510 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#