data_6JKM # _model_server_result.job_id 9Inl6p5uYtTspOW4pYnAqg _model_server_result.datetime_utc '2024-11-27 16:50:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1503}' # _entry.id 6JKM # _exptl.entry_id 6JKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JKM _cell.length_a 59.333 _cell.length_b 61.979 _cell.length_c 96.232 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 187 A ASN 1306 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A OD1 ASP 207 A ASP 1326 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A OD1 ASP 207 A ASP 1326 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 A OD2 ASP 207 A ASP 1326 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 B O3B ADP . A ADP 1501 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc6 B O2A ADP . A ADP 1501 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc7 B O2B ADP . A ADP 1501 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 C MG MG . A MG 1502 1_555 F O HOH . A HOH 1683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc9 C MG MG . A MG 1502 1_555 F O HOH . A HOH 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc10 D MG MG . A MG 1503 1_555 F O HOH . A HOH 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc11 D MG MG . A MG 1503 1_555 F O HOH . A HOH 1783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc12 D MG MG . A MG 1503 1_555 F O HOH . A HOH 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JKM _atom_sites.fract_transf_matrix[1][1] 0.016854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1501 1 ADP ADP . C 3 MG A 1 1502 1 MG MG . D 3 MG A 1 1503 2 MG MG . E 4 GOL A 1 1504 1 GOL GOL . F 5 HOH A 1 1601 133 HOH HOH . F 5 HOH A 2 1602 127 HOH HOH . F 5 HOH A 3 1603 210 HOH HOH . F 5 HOH A 4 1604 160 HOH HOH . F 5 HOH A 5 1605 56 HOH HOH . F 5 HOH A 6 1606 231 HOH HOH . F 5 HOH A 7 1607 208 HOH HOH . F 5 HOH A 8 1608 110 HOH HOH . F 5 HOH A 9 1609 171 HOH HOH . F 5 HOH A 10 1610 134 HOH HOH . F 5 HOH A 11 1611 150 HOH HOH . F 5 HOH A 12 1612 226 HOH HOH . F 5 HOH A 13 1613 104 HOH HOH . F 5 HOH A 14 1614 170 HOH HOH . F 5 HOH A 15 1615 113 HOH HOH . F 5 HOH A 16 1616 44 HOH HOH . F 5 HOH A 17 1617 230 HOH HOH . F 5 HOH A 18 1618 86 HOH HOH . F 5 HOH A 19 1619 181 HOH HOH . F 5 HOH A 20 1620 129 HOH HOH . F 5 HOH A 21 1621 55 HOH HOH . F 5 HOH A 22 1622 1 HOH HOH . F 5 HOH A 23 1623 153 HOH HOH . F 5 HOH A 24 1624 26 HOH HOH . F 5 HOH A 25 1625 163 HOH HOH . F 5 HOH A 26 1626 212 HOH HOH . F 5 HOH A 27 1627 81 HOH HOH . F 5 HOH A 28 1628 13 HOH HOH . F 5 HOH A 29 1629 196 HOH HOH . F 5 HOH A 30 1630 27 HOH HOH . F 5 HOH A 31 1631 24 HOH HOH . F 5 HOH A 32 1632 61 HOH HOH . F 5 HOH A 33 1633 63 HOH HOH . F 5 HOH A 34 1634 4 HOH HOH . F 5 HOH A 35 1635 199 HOH HOH . F 5 HOH A 36 1636 93 HOH HOH . F 5 HOH A 37 1637 185 HOH HOH . F 5 HOH A 38 1638 52 HOH HOH . F 5 HOH A 39 1639 79 HOH HOH . F 5 HOH A 40 1640 7 HOH HOH . F 5 HOH A 41 1641 167 HOH HOH . F 5 HOH A 42 1642 144 HOH HOH . F 5 HOH A 43 1643 6 HOH HOH . F 5 HOH A 44 1644 197 HOH HOH . F 5 HOH A 45 1645 17 HOH HOH . F 5 HOH A 46 1646 108 HOH HOH . F 5 HOH A 47 1647 9 HOH HOH . F 5 HOH A 48 1648 190 HOH HOH . F 5 HOH A 49 1649 54 HOH HOH . F 5 HOH A 50 1650 15 HOH HOH . F 5 HOH A 51 1651 85 HOH HOH . F 5 HOH A 52 1652 201 HOH HOH . F 5 HOH A 53 1653 28 HOH HOH . F 5 HOH A 54 1654 148 HOH HOH . F 5 HOH A 55 1655 169 HOH HOH . F 5 HOH A 56 1656 115 HOH HOH . F 5 HOH A 57 1657 189 HOH HOH . F 5 HOH A 58 1658 58 HOH HOH . F 5 HOH A 59 1659 125 HOH HOH . F 5 HOH A 60 1660 140 HOH HOH . F 5 HOH A 61 1661 23 HOH HOH . F 5 HOH A 62 1662 89 HOH HOH . F 5 HOH A 63 1663 65 HOH HOH . F 5 HOH A 64 1664 50 HOH HOH . F 5 HOH A 65 1665 62 HOH HOH . F 5 HOH A 66 1666 141 HOH HOH . F 5 HOH A 67 1667 98 HOH HOH . F 5 HOH A 68 1668 146 HOH HOH . F 5 HOH A 69 1669 31 HOH HOH . F 5 HOH A 70 1670 248 HOH HOH . F 5 HOH A 71 1671 137 HOH HOH . F 5 HOH A 72 1672 34 HOH HOH . F 5 HOH A 73 1673 240 HOH HOH . F 5 HOH A 74 1674 91 HOH HOH . F 5 HOH A 75 1675 51 HOH HOH . F 5 HOH A 76 1676 237 HOH HOH . F 5 HOH A 77 1677 42 HOH HOH . F 5 HOH A 78 1678 12 HOH HOH . F 5 HOH A 79 1679 39 HOH HOH . F 5 HOH A 80 1680 48 HOH HOH . F 5 HOH A 81 1681 2 HOH HOH . F 5 HOH A 82 1682 43 HOH HOH . F 5 HOH A 83 1683 178 HOH HOH . F 5 HOH A 84 1684 45 HOH HOH . F 5 HOH A 85 1685 66 HOH HOH . F 5 HOH A 86 1686 18 HOH HOH . F 5 HOH A 87 1687 60 HOH HOH . F 5 HOH A 88 1688 92 HOH HOH . F 5 HOH A 89 1689 35 HOH HOH . F 5 HOH A 90 1690 32 HOH HOH . F 5 HOH A 91 1691 99 HOH HOH . F 5 HOH A 92 1692 68 HOH HOH . F 5 HOH A 93 1693 194 HOH HOH . F 5 HOH A 94 1694 21 HOH HOH . F 5 HOH A 95 1695 253 HOH HOH . F 5 HOH A 96 1696 25 HOH HOH . F 5 HOH A 97 1697 95 HOH HOH . F 5 HOH A 98 1698 64 HOH HOH . F 5 HOH A 99 1699 249 HOH HOH . F 5 HOH A 100 1700 22 HOH HOH . F 5 HOH A 101 1701 177 HOH HOH . F 5 HOH A 102 1702 94 HOH HOH . F 5 HOH A 103 1703 83 HOH HOH . F 5 HOH A 104 1704 88 HOH HOH . F 5 HOH A 105 1705 142 HOH HOH . F 5 HOH A 106 1706 106 HOH HOH . F 5 HOH A 107 1707 11 HOH HOH . F 5 HOH A 108 1708 143 HOH HOH . F 5 HOH A 109 1709 162 HOH HOH . F 5 HOH A 110 1710 40 HOH HOH . F 5 HOH A 111 1711 117 HOH HOH . F 5 HOH A 112 1712 112 HOH HOH . F 5 HOH A 113 1713 116 HOH HOH . F 5 HOH A 114 1714 29 HOH HOH . F 5 HOH A 115 1715 84 HOH HOH . F 5 HOH A 116 1716 97 HOH HOH . F 5 HOH A 117 1717 67 HOH HOH . F 5 HOH A 118 1718 41 HOH HOH . F 5 HOH A 119 1719 10 HOH HOH . F 5 HOH A 120 1720 47 HOH HOH . F 5 HOH A 121 1721 203 HOH HOH . F 5 HOH A 122 1722 200 HOH HOH . F 5 HOH A 123 1723 8 HOH HOH . F 5 HOH A 124 1724 209 HOH HOH . F 5 HOH A 125 1725 59 HOH HOH . F 5 HOH A 126 1726 77 HOH HOH . F 5 HOH A 127 1727 37 HOH HOH . F 5 HOH A 128 1728 239 HOH HOH . F 5 HOH A 129 1729 119 HOH HOH . F 5 HOH A 130 1730 155 HOH HOH . F 5 HOH A 131 1731 138 HOH HOH . F 5 HOH A 132 1732 191 HOH HOH . F 5 HOH A 133 1733 225 HOH HOH . F 5 HOH A 134 1734 204 HOH HOH . F 5 HOH A 135 1735 80 HOH HOH . F 5 HOH A 136 1736 195 HOH HOH . F 5 HOH A 137 1737 30 HOH HOH . F 5 HOH A 138 1738 103 HOH HOH . F 5 HOH A 139 1739 3 HOH HOH . F 5 HOH A 140 1740 234 HOH HOH . F 5 HOH A 141 1741 100 HOH HOH . F 5 HOH A 142 1742 78 HOH HOH . F 5 HOH A 143 1743 72 HOH HOH . F 5 HOH A 144 1744 19 HOH HOH . F 5 HOH A 145 1745 5 HOH HOH . F 5 HOH A 146 1746 211 HOH HOH . F 5 HOH A 147 1747 188 HOH HOH . F 5 HOH A 148 1748 49 HOH HOH . F 5 HOH A 149 1749 149 HOH HOH . F 5 HOH A 150 1750 220 HOH HOH . F 5 HOH A 151 1751 213 HOH HOH . F 5 HOH A 152 1752 16 HOH HOH . F 5 HOH A 153 1753 114 HOH HOH . F 5 HOH A 154 1754 90 HOH HOH . F 5 HOH A 155 1755 101 HOH HOH . F 5 HOH A 156 1756 136 HOH HOH . F 5 HOH A 157 1757 53 HOH HOH . F 5 HOH A 158 1758 151 HOH HOH . F 5 HOH A 159 1759 74 HOH HOH . F 5 HOH A 160 1760 87 HOH HOH . F 5 HOH A 161 1761 219 HOH HOH . F 5 HOH A 162 1762 223 HOH HOH . F 5 HOH A 163 1763 20 HOH HOH . F 5 HOH A 164 1764 111 HOH HOH . F 5 HOH A 165 1765 193 HOH HOH . F 5 HOH A 166 1766 161 HOH HOH . F 5 HOH A 167 1767 205 HOH HOH . F 5 HOH A 168 1768 242 HOH HOH . F 5 HOH A 169 1769 46 HOH HOH . F 5 HOH A 170 1770 192 HOH HOH . F 5 HOH A 171 1771 70 HOH HOH . F 5 HOH A 172 1772 57 HOH HOH . F 5 HOH A 173 1773 202 HOH HOH . F 5 HOH A 174 1774 159 HOH HOH . F 5 HOH A 175 1775 118 HOH HOH . F 5 HOH A 176 1776 109 HOH HOH . F 5 HOH A 177 1777 156 HOH HOH . F 5 HOH A 178 1778 14 HOH HOH . F 5 HOH A 179 1779 246 HOH HOH . F 5 HOH A 180 1780 123 HOH HOH . F 5 HOH A 181 1781 179 HOH HOH . F 5 HOH A 182 1782 207 HOH HOH . F 5 HOH A 183 1783 124 HOH HOH . F 5 HOH A 184 1784 36 HOH HOH . F 5 HOH A 185 1785 71 HOH HOH . F 5 HOH A 186 1786 105 HOH HOH . F 5 HOH A 187 1787 228 HOH HOH . F 5 HOH A 188 1788 187 HOH HOH . F 5 HOH A 189 1789 38 HOH HOH . F 5 HOH A 190 1790 165 HOH HOH . F 5 HOH A 191 1791 166 HOH HOH . F 5 HOH A 192 1792 69 HOH HOH . F 5 HOH A 193 1793 96 HOH HOH . F 5 HOH A 194 1794 73 HOH HOH . F 5 HOH A 195 1795 186 HOH HOH . F 5 HOH A 196 1796 235 HOH HOH . F 5 HOH A 197 1797 184 HOH HOH . F 5 HOH A 198 1798 135 HOH HOH . F 5 HOH A 199 1799 252 HOH HOH . F 5 HOH A 200 1800 128 HOH HOH . F 5 HOH A 201 1801 254 HOH HOH . F 5 HOH A 202 1802 172 HOH HOH . F 5 HOH A 203 1803 255 HOH HOH . F 5 HOH A 204 1804 232 HOH HOH . F 5 HOH A 205 1805 126 HOH HOH . F 5 HOH A 206 1806 145 HOH HOH . F 5 HOH A 207 1807 175 HOH HOH . F 5 HOH A 208 1808 102 HOH HOH . F 5 HOH A 209 1809 33 HOH HOH . F 5 HOH A 210 1810 233 HOH HOH . F 5 HOH A 211 1811 82 HOH HOH . F 5 HOH A 212 1812 243 HOH HOH . F 5 HOH A 213 1813 132 HOH HOH . F 5 HOH A 214 1814 180 HOH HOH . F 5 HOH A 215 1815 174 HOH HOH . F 5 HOH A 216 1816 251 HOH HOH . F 5 HOH A 217 1817 206 HOH HOH . F 5 HOH A 218 1818 182 HOH HOH . F 5 HOH A 219 1819 154 HOH HOH . F 5 HOH A 220 1820 247 HOH HOH . F 5 HOH A 221 1821 229 HOH HOH . F 5 HOH A 222 1822 147 HOH HOH . F 5 HOH A 223 1823 139 HOH HOH . F 5 HOH A 224 1824 183 HOH HOH . F 5 HOH A 225 1825 217 HOH HOH . F 5 HOH A 226 1826 157 HOH HOH . F 5 HOH A 227 1827 227 HOH HOH . F 5 HOH A 228 1828 241 HOH HOH . F 5 HOH A 229 1829 215 HOH HOH . F 5 HOH A 230 1830 221 HOH HOH . F 5 HOH A 231 1831 76 HOH HOH . F 5 HOH A 232 1832 168 HOH HOH . F 5 HOH A 233 1833 245 HOH HOH . F 5 HOH A 234 1834 120 HOH HOH . F 5 HOH A 235 1835 121 HOH HOH . F 5 HOH A 236 1836 214 HOH HOH . F 5 HOH A 237 1837 238 HOH HOH . F 5 HOH A 238 1838 218 HOH HOH . F 5 HOH A 239 1839 176 HOH HOH . F 5 HOH A 240 1840 131 HOH HOH . F 5 HOH A 241 1841 216 HOH HOH . F 5 HOH A 242 1842 198 HOH HOH . F 5 HOH A 243 1843 130 HOH HOH . F 5 HOH A 244 1844 158 HOH HOH . F 5 HOH A 245 1845 107 HOH HOH . F 5 HOH A 246 1846 250 HOH HOH . F 5 HOH A 247 1847 224 HOH HOH . F 5 HOH A 248 1848 152 HOH HOH . F 5 HOH A 249 1849 75 HOH HOH . F 5 HOH A 250 1850 236 HOH HOH . F 5 HOH A 251 1851 173 HOH HOH . F 5 HOH A 252 1852 164 HOH HOH . F 5 HOH A 253 1853 122 HOH HOH . F 5 HOH A 254 1854 222 HOH HOH . F 5 HOH A 255 1855 244 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.605 _atom_site.Cartn_y 23.271 _atom_site.Cartn_z 33.317 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #