data_6JKP # _model_server_result.job_id GPrLYM--TpRN98O87uYtnA _model_server_result.datetime_utc '2025-07-04 19:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6JKP # _exptl.entry_id 6JKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.53 _cell.angle_gamma 90 _cell.entry_id 6JKP _cell.length_a 70.881 _cell.length_b 112.317 _cell.length_c 93.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 1 2 C,G,H,J 2 1 D,I 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 70.881 0 0 3 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -56.1585 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id GLN _struct_conn.ptnr1_label_seq_id 201 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id GLN _struct_conn.ptnr1_auth_seq_id 196 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id ZN _struct_conn.ptnr2_label_comp_id ZN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id ZN _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.533 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6JKP _atom_sites.fract_transf_matrix[1][1] 0.014108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004456 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 401 1 NAD NAD . F 2 NAD B 1 401 2 NAD NAD . G 2 NAD C 1 401 4 NAD NAD . H 3 ZN C 1 402 1 ZN ZN . I 2 NAD D 1 401 3 NAD NAD . J 4 HOH C 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 -10.46 -15.807 -37.779 1 80.27 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . E 2 -9.468 -14.756 -38.196 1 70.95 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . E 2 -11.954 -15.81 -37.824 1 80.11 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . E 2 -10.134 -15.78 -36.069 1 74.03 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . E 2 -10.651 -14.615 -35.566 1 78.52 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . E 2 -11.958 -14.938 -34.88 1 74.78 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . E 2 -11.704 -15.74 -33.75 1 56.32 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . E 2 -12.509 -13.628 -34.345 1 70.22 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . E 2 -13.169 -13.047 -35.422 1 82.34 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . E 2 -13.471 -14.154 -33.277 1 74.59 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . E 2 -14.723 -14.447 -33.803 1 88.12 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . E 2 -12.799 -15.536 -32.868 1 76.42 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . E 2 -12.269 -15.488 -31.49 1 81.37 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . E 2 -12.898 -15.844 -30.278 1 76.18 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . E 2 -12.116 -15.665 -29.214 1 63.1 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . E 2 -10.913 -15.166 -29.74 1 59.37 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . E 2 -9.693 -14.779 -29.128 1 58.89 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . E 2 -9.56 -14.871 -27.772 1 52.88 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . E 2 -8.653 -14.314 -29.894 1 62.31 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . E 2 -8.868 -14.253 -31.248 1 57.13 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . E 2 -9.961 -14.582 -31.968 1 52.77 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . E 2 -10.984 -15.045 -31.165 1 66.39 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . E 2 -9.721 -17.099 -38.399 1 93.92 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . E 2 -8.169 -17.234 -38.089 1 83.54 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . E 2 -7.498 -16.416 -37.013 1 64.05 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . E 2 -7.946 -18.651 -38.484 1 85.98 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . E 2 -7.4 -16.493 -39.517 1 83.36 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . E 2 -8.073 -16.991 -40.601 1 73.28 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . E 2 -8.239 -15.885 -41.618 1 77.56 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . E 2 -6.928 -15.54 -42.127 1 92.96 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . E 2 -9.035 -16.473 -42.803 1 86.96 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . E 2 -9.564 -15.385 -43.478 1 84.45 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . E 2 -7.919 -17.142 -43.6 1 96.57 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . E 2 -8.164 -17.226 -44.965 1 108.03 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . E 2 -6.822 -16.05 -43.438 1 96.44 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . E 2 -5.452 -16.688 -43.544 1 87.81 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . E 2 -4.424 -15.835 -43.833 1 88.12 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . E 2 -3.132 -16.341 -43.948 1 88.98 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . E 2 -2.067 -15.342 -44.265 1 72.52 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . E 2 -0.88 -15.65 -44.294 1 73.65 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . E 2 -2.484 -14.057 -44.521 1 67.9 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . E 2 -2.907 -17.71 -43.765 1 89.37 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . E 2 -3.975 -18.554 -43.472 1 85.65 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . E 2 -5.269 -18.033 -43.359 1 77 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #