data_6JLA # _model_server_result.job_id FWihn3prRoCBL9Pgs2KXAw _model_server_result.datetime_utc '2024-11-26 02:54:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6JLA # _exptl.entry_id 6JLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.29 _cell.angle_gamma 90 _cell.entry_id 6JLA _cell.length_a 56.966 _cell.length_b 59.671 _cell.length_c 137.336 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,H,I,J,L 1 1 B,D,E,G,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG B 400 NAG 2 n E NAG 2 E 2 NAG B 401 NAG 2 n E FUC 3 E 3 FUC B 402 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 42 1_555 A SG CYS 146 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 62 A CYS 88 1_555 A SG CYS 196 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 87 A CYS 113 1_555 A SG CYS 184 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 B SG CYS 16 B CYS 42 1_555 B SG CYS 146 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf5 B SG CYS 87 B CYS 113 1_555 B SG CYS 184 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf6 C SG CYS 16 D CYS 42 1_555 C SG CYS 146 D CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf7 C SG CYS 62 D CYS 88 1_555 C SG CYS 196 D CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf8 C SG CYS 87 D CYS 113 1_555 C SG CYS 184 D CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 D SG CYS 16 C CYS 42 1_555 D SG CYS 146 C CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf10 D SG CYS 87 C CYS 113 1_555 D SG CYS 184 C CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? covale ? covale1 A ND2 ASN 104 A ASN 130 1_555 F C1 NAG . A NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? covale ? covale2 B ND2 ASN 104 B ASN 130 1_555 G C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 B ND2 ASN 156 B ASN 182 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale4 C ND2 ASN 104 D ASN 130 1_555 H C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.087 ? covale ? covale5 C ND2 ASN 156 D ASN 182 1_555 I C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 260 n n C1 O1 NAG sing 261 n n C1 O5 NAG sing 262 n n C1 H1 NAG sing 263 n n C2 C3 NAG sing 264 n n C2 N2 NAG sing 265 n n C2 H2 NAG sing 266 n n C3 C4 NAG sing 267 n n C3 O3 NAG sing 268 n n C3 H3 NAG sing 269 n n C4 C5 NAG sing 270 n n C4 O4 NAG sing 271 n n C4 H4 NAG sing 272 n n C5 C6 NAG sing 273 n n C5 O5 NAG sing 274 n n C5 H5 NAG sing 275 n n C6 O6 NAG sing 276 n n C6 H61 NAG sing 277 n n C6 H62 NAG sing 278 n n C7 C8 NAG sing 279 n n C7 N2 NAG sing 280 n n C7 O7 NAG doub 281 n n C8 H81 NAG sing 282 n n C8 H82 NAG sing 283 n n C8 H83 NAG sing 284 n n N2 HN2 NAG sing 285 n n O1 HO1 NAG sing 286 n n O3 HO3 NAG sing 287 n n O4 HO4 NAG sing 288 n n O6 HO6 NAG sing 289 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6JLA _atom_sites.fract_transf_matrix[1][1] 0.017554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003505 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG A 1 300 300 NAG NAG . G 3 NAG B 1 301 300 NAG NAG . H 3 NAG D 1 301 300 NAG NAG . I 3 NAG D 1 302 400 NAG NAG . J 4 HOH A 1 401 80 HOH HOH . J 4 HOH A 2 402 72 HOH HOH . J 4 HOH A 3 403 74 HOH HOH . J 4 HOH A 4 404 77 HOH HOH . J 4 HOH A 5 405 79 HOH HOH . J 4 HOH A 6 406 75 HOH HOH . J 4 HOH A 7 407 22 HOH HOH . J 4 HOH A 8 408 81 HOH HOH . J 4 HOH A 9 409 78 HOH HOH . J 4 HOH A 10 410 76 HOH HOH . J 4 HOH A 11 411 73 HOH HOH . J 4 HOH A 12 412 82 HOH HOH . J 4 HOH A 13 413 44 HOH HOH . J 4 HOH A 14 414 19 HOH HOH . J 4 HOH A 15 415 40 HOH HOH . K 4 HOH B 1 401 65 HOH HOH . K 4 HOH B 2 402 58 HOH HOH . K 4 HOH B 3 403 64 HOH HOH . K 4 HOH B 4 404 27 HOH HOH . K 4 HOH B 5 405 30 HOH HOH . K 4 HOH B 6 406 62 HOH HOH . K 4 HOH B 7 407 109 HOH HOH . K 4 HOH B 8 408 66 HOH HOH . K 4 HOH B 9 409 3 HOH HOH . K 4 HOH B 10 410 26 HOH HOH . K 4 HOH B 11 411 108 HOH HOH . K 4 HOH B 12 412 105 HOH HOH . K 4 HOH B 13 413 1 HOH HOH . K 4 HOH B 14 414 36 HOH HOH . K 4 HOH B 15 415 20 HOH HOH . K 4 HOH B 16 416 14 HOH HOH . K 4 HOH B 17 417 54 HOH HOH . K 4 HOH B 18 418 7 HOH HOH . K 4 HOH B 19 419 41 HOH HOH . K 4 HOH B 20 420 52 HOH HOH . K 4 HOH B 21 421 53 HOH HOH . K 4 HOH B 22 422 29 HOH HOH . K 4 HOH B 23 423 15 HOH HOH . K 4 HOH B 24 424 98 HOH HOH . K 4 HOH B 25 425 59 HOH HOH . K 4 HOH B 26 426 16 HOH HOH . K 4 HOH B 27 427 51 HOH HOH . K 4 HOH B 28 428 57 HOH HOH . K 4 HOH B 29 429 48 HOH HOH . K 4 HOH B 30 430 56 HOH HOH . L 4 HOH D 1 401 5 HOH HOH . L 4 HOH D 2 402 9 HOH HOH . L 4 HOH D 3 403 100 HOH HOH . L 4 HOH D 4 404 101 HOH HOH . L 4 HOH D 5 405 106 HOH HOH . L 4 HOH D 6 406 99 HOH HOH . L 4 HOH D 7 407 23 HOH HOH . L 4 HOH D 8 408 8 HOH HOH . L 4 HOH D 9 409 12 HOH HOH . L 4 HOH D 10 410 103 HOH HOH . L 4 HOH D 11 411 17 HOH HOH . L 4 HOH D 12 412 83 HOH HOH . L 4 HOH D 13 413 104 HOH HOH . L 4 HOH D 14 414 102 HOH HOH . M 4 HOH C 1 301 60 HOH HOH . M 4 HOH C 2 302 49 HOH HOH . M 4 HOH C 3 303 38 HOH HOH . M 4 HOH C 4 304 25 HOH HOH . M 4 HOH C 5 305 94 HOH HOH . M 4 HOH C 6 306 35 HOH HOH . M 4 HOH C 7 307 85 HOH HOH . M 4 HOH C 8 308 96 HOH HOH . M 4 HOH C 9 309 31 HOH HOH . M 4 HOH C 10 310 28 HOH HOH . M 4 HOH C 11 311 45 HOH HOH . M 4 HOH C 12 312 107 HOH HOH . M 4 HOH C 13 313 93 HOH HOH . M 4 HOH C 14 314 39 HOH HOH . M 4 HOH C 15 315 6 HOH HOH . M 4 HOH C 16 316 10 HOH HOH . M 4 HOH C 17 317 4 HOH HOH . M 4 HOH C 18 318 24 HOH HOH . M 4 HOH C 19 319 32 HOH HOH . M 4 HOH C 20 320 71 HOH HOH . M 4 HOH C 21 321 21 HOH HOH . M 4 HOH C 22 322 42 HOH HOH . M 4 HOH C 23 323 18 HOH HOH . M 4 HOH C 24 324 87 HOH HOH . M 4 HOH C 25 325 50 HOH HOH . M 4 HOH C 26 326 88 HOH HOH . M 4 HOH C 27 327 33 HOH HOH . M 4 HOH C 28 328 46 HOH HOH . M 4 HOH C 29 329 37 HOH HOH . M 4 HOH C 30 330 2 HOH HOH . M 4 HOH C 31 331 97 HOH HOH . M 4 HOH C 32 332 91 HOH HOH . M 4 HOH C 33 333 86 HOH HOH . M 4 HOH C 34 334 34 HOH HOH . M 4 HOH C 35 335 47 HOH HOH . M 4 HOH C 36 336 90 HOH HOH . M 4 HOH C 37 337 43 HOH HOH . M 4 HOH C 38 338 63 HOH HOH . M 4 HOH C 39 339 89 HOH HOH . M 4 HOH C 40 340 11 HOH HOH . M 4 HOH C 41 341 68 HOH HOH . M 4 HOH C 42 342 61 HOH HOH . M 4 HOH C 43 343 84 HOH HOH . M 4 HOH C 44 344 13 HOH HOH . M 4 HOH C 45 345 70 HOH HOH . M 4 HOH C 46 346 69 HOH HOH . M 4 HOH C 47 347 95 HOH HOH . M 4 HOH C 48 348 55 HOH HOH . M 4 HOH C 49 349 67 HOH HOH . M 4 HOH C 50 350 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 3 27.419 26.656 41.009 1 116.32 ? C1 NAG 301 B 1 HETATM 2 C C2 NAG . . . G 3 27 25.175 40.94 1 116.33 ? C2 NAG 301 B 1 HETATM 3 C C3 NAG . . . G 3 28.112 24.274 41.515 1 114.65 ? C3 NAG 301 B 1 HETATM 4 C C4 NAG . . . G 3 29.559 24.717 41.245 1 114.47 ? C4 NAG 301 B 1 HETATM 5 C C5 NAG . . . G 3 29.739 26.209 40.929 1 117.19 ? C5 NAG 301 B 1 HETATM 6 C C6 NAG . . . G 3 31.023 26.454 40.126 1 114.93 ? C6 NAG 301 B 1 HETATM 7 C C7 NAG . . . G 3 24.542 24.7 40.936 1 106.71 ? C7 NAG 301 B 1 HETATM 8 C C8 NAG . . . G 3 23.308 24.349 41.715 1 98.38 ? C8 NAG 301 B 1 HETATM 9 N N2 NAG . . . G 3 25.712 24.851 41.582 1 115.27 ? N2 NAG 301 B 1 HETATM 10 O O3 NAG . . . G 3 27.966 22.96 41.011 1 112.84 ? O3 NAG 301 B 1 HETATM 11 O O4 NAG . . . G 3 30.34 24.391 42.376 1 110.72 ? O4 NAG 301 B 1 HETATM 12 O O5 NAG . . . G 3 28.605 26.69 40.219 1 118.09 ? O5 NAG 301 B 1 HETATM 13 O O6 NAG . . . G 3 31.037 27.731 39.521 1 104.72 ? O6 NAG 301 B 1 HETATM 14 O O7 NAG . . . G 3 24.424 24.841 39.731 1 113.06 ? O7 NAG 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #