data_6JM5 # _model_server_result.job_id HAp3iYBa2JteHEWSLiH5Zw _model_server_result.datetime_utc '2024-11-26 10:12:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6JM5 # _exptl.entry_id 6JM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.64 _cell.angle_gamma 90 _cell.entry_id 6JM5 _cell.length_a 130.822 _cell.length_b 48.95 _cell.length_c 47.439 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 63 A ASN 80 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc2 D O HOH . A HOH 266 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc3 D O HOH . A HOH 307 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc4 B OG SER 85 B SER 102 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc5 C NA NA . B NA 201 1_555 E O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc6 C NA NA . B NA 201 1_555 E O HOH . B HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc7 C NA NA . B NA 201 1_555 E O HOH . B HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JM5 _atom_sites.fract_transf_matrix[1][1] 0.007644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002728 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 201 1 NA NA . D 3 HOH A 1 201 178 HOH HOH . D 3 HOH A 2 202 238 HOH HOH . D 3 HOH A 3 203 161 HOH HOH . D 3 HOH A 4 204 213 HOH HOH . D 3 HOH A 5 205 86 HOH HOH . D 3 HOH A 6 206 149 HOH HOH . D 3 HOH A 7 207 48 HOH HOH . D 3 HOH A 8 208 67 HOH HOH . D 3 HOH A 9 209 27 HOH HOH . D 3 HOH A 10 210 124 HOH HOH . D 3 HOH A 11 211 140 HOH HOH . D 3 HOH A 12 212 30 HOH HOH . D 3 HOH A 13 213 16 HOH HOH . D 3 HOH A 14 214 218 HOH HOH . D 3 HOH A 15 215 182 HOH HOH . D 3 HOH A 16 216 57 HOH HOH . D 3 HOH A 17 217 79 HOH HOH . D 3 HOH A 18 218 58 HOH HOH . D 3 HOH A 19 219 215 HOH HOH . D 3 HOH A 20 220 216 HOH HOH . D 3 HOH A 21 221 176 HOH HOH . D 3 HOH A 22 222 1 HOH HOH . D 3 HOH A 23 223 116 HOH HOH . D 3 HOH A 24 224 72 HOH HOH . D 3 HOH A 25 225 123 HOH HOH . D 3 HOH A 26 226 89 HOH HOH . D 3 HOH A 27 227 109 HOH HOH . D 3 HOH A 28 228 207 HOH HOH . D 3 HOH A 29 229 200 HOH HOH . D 3 HOH A 30 230 117 HOH HOH . D 3 HOH A 31 231 3 HOH HOH . D 3 HOH A 32 232 172 HOH HOH . D 3 HOH A 33 233 85 HOH HOH . D 3 HOH A 34 234 20 HOH HOH . D 3 HOH A 35 235 17 HOH HOH . D 3 HOH A 36 236 119 HOH HOH . D 3 HOH A 37 237 223 HOH HOH . D 3 HOH A 38 238 23 HOH HOH . D 3 HOH A 39 239 22 HOH HOH . D 3 HOH A 40 240 64 HOH HOH . D 3 HOH A 41 241 162 HOH HOH . D 3 HOH A 42 242 45 HOH HOH . D 3 HOH A 43 243 9 HOH HOH . D 3 HOH A 44 244 150 HOH HOH . D 3 HOH A 45 245 43 HOH HOH . D 3 HOH A 46 246 11 HOH HOH . D 3 HOH A 47 247 39 HOH HOH . D 3 HOH A 48 248 227 HOH HOH . D 3 HOH A 49 249 96 HOH HOH . D 3 HOH A 50 250 15 HOH HOH . D 3 HOH A 51 251 19 HOH HOH . D 3 HOH A 52 252 71 HOH HOH . D 3 HOH A 53 253 134 HOH HOH . D 3 HOH A 54 254 14 HOH HOH . D 3 HOH A 55 255 101 HOH HOH . D 3 HOH A 56 256 237 HOH HOH . D 3 HOH A 57 257 12 HOH HOH . D 3 HOH A 58 258 183 HOH HOH . D 3 HOH A 59 259 26 HOH HOH . D 3 HOH A 60 260 84 HOH HOH . D 3 HOH A 61 261 73 HOH HOH . D 3 HOH A 62 262 55 HOH HOH . D 3 HOH A 63 263 221 HOH HOH . D 3 HOH A 64 264 107 HOH HOH . D 3 HOH A 65 265 50 HOH HOH . D 3 HOH A 66 266 38 HOH HOH . D 3 HOH A 67 267 6 HOH HOH . D 3 HOH A 68 268 197 HOH HOH . D 3 HOH A 69 269 220 HOH HOH . D 3 HOH A 70 270 28 HOH HOH . D 3 HOH A 71 271 111 HOH HOH . D 3 HOH A 72 272 112 HOH HOH . D 3 HOH A 73 273 24 HOH HOH . D 3 HOH A 74 274 59 HOH HOH . D 3 HOH A 75 275 192 HOH HOH . D 3 HOH A 76 276 105 HOH HOH . D 3 HOH A 77 277 92 HOH HOH . D 3 HOH A 78 278 115 HOH HOH . D 3 HOH A 79 279 225 HOH HOH . D 3 HOH A 80 280 120 HOH HOH . D 3 HOH A 81 281 230 HOH HOH . D 3 HOH A 82 282 170 HOH HOH . D 3 HOH A 83 283 42 HOH HOH . D 3 HOH A 84 284 241 HOH HOH . D 3 HOH A 85 285 37 HOH HOH . D 3 HOH A 86 286 185 HOH HOH . D 3 HOH A 87 287 46 HOH HOH . D 3 HOH A 88 288 158 HOH HOH . D 3 HOH A 89 289 93 HOH HOH . D 3 HOH A 90 290 196 HOH HOH . D 3 HOH A 91 291 175 HOH HOH . D 3 HOH A 92 292 251 HOH HOH . D 3 HOH A 93 293 74 HOH HOH . D 3 HOH A 94 294 252 HOH HOH . D 3 HOH A 95 295 187 HOH HOH . D 3 HOH A 96 296 154 HOH HOH . D 3 HOH A 97 297 174 HOH HOH . D 3 HOH A 98 298 198 HOH HOH . D 3 HOH A 99 299 160 HOH HOH . D 3 HOH A 100 300 104 HOH HOH . D 3 HOH A 101 301 75 HOH HOH . D 3 HOH A 102 302 151 HOH HOH . D 3 HOH A 103 303 138 HOH HOH . D 3 HOH A 104 304 32 HOH HOH . D 3 HOH A 105 305 243 HOH HOH . D 3 HOH A 106 306 217 HOH HOH . D 3 HOH A 107 307 76 HOH HOH . D 3 HOH A 108 308 147 HOH HOH . D 3 HOH A 109 309 41 HOH HOH . D 3 HOH A 110 310 244 HOH HOH . D 3 HOH A 111 311 94 HOH HOH . D 3 HOH A 112 312 44 HOH HOH . D 3 HOH A 113 313 247 HOH HOH . D 3 HOH A 114 314 202 HOH HOH . D 3 HOH A 115 315 168 HOH HOH . D 3 HOH A 116 316 214 HOH HOH . D 3 HOH A 117 317 239 HOH HOH . D 3 HOH A 118 318 184 HOH HOH . D 3 HOH A 119 319 141 HOH HOH . D 3 HOH A 120 320 249 HOH HOH . D 3 HOH A 121 321 234 HOH HOH . D 3 HOH A 122 322 235 HOH HOH . D 3 HOH A 123 323 139 HOH HOH . D 3 HOH A 124 324 125 HOH HOH . D 3 HOH A 125 325 191 HOH HOH . D 3 HOH A 126 326 224 HOH HOH . D 3 HOH A 127 327 127 HOH HOH . D 3 HOH A 128 328 99 HOH HOH . D 3 HOH A 129 329 56 HOH HOH . D 3 HOH A 130 330 122 HOH HOH . D 3 HOH A 131 331 179 HOH HOH . D 3 HOH A 132 332 163 HOH HOH . D 3 HOH A 133 333 205 HOH HOH . D 3 HOH A 134 334 248 HOH HOH . D 3 HOH A 135 335 240 HOH HOH . D 3 HOH A 136 336 169 HOH HOH . D 3 HOH A 137 337 226 HOH HOH . D 3 HOH A 138 338 121 HOH HOH . D 3 HOH A 139 339 70 HOH HOH . D 3 HOH A 140 340 236 HOH HOH . D 3 HOH A 141 341 171 HOH HOH . D 3 HOH A 142 342 195 HOH HOH . D 3 HOH A 143 343 231 HOH HOH . D 3 HOH A 144 344 61 HOH HOH . D 3 HOH A 145 345 204 HOH HOH . D 3 HOH A 146 346 164 HOH HOH . D 3 HOH A 147 347 118 HOH HOH . E 3 HOH B 1 301 155 HOH HOH . E 3 HOH B 2 302 209 HOH HOH . E 3 HOH B 3 303 132 HOH HOH . E 3 HOH B 4 304 87 HOH HOH . E 3 HOH B 5 305 222 HOH HOH . E 3 HOH B 6 306 78 HOH HOH . E 3 HOH B 7 307 21 HOH HOH . E 3 HOH B 8 308 34 HOH HOH . E 3 HOH B 9 309 133 HOH HOH . E 3 HOH B 10 310 95 HOH HOH . E 3 HOH B 11 311 229 HOH HOH . E 3 HOH B 12 312 54 HOH HOH . E 3 HOH B 13 313 144 HOH HOH . E 3 HOH B 14 314 90 HOH HOH . E 3 HOH B 15 315 2 HOH HOH . E 3 HOH B 16 316 80 HOH HOH . E 3 HOH B 17 317 100 HOH HOH . E 3 HOH B 18 318 4 HOH HOH . E 3 HOH B 19 319 5 HOH HOH . E 3 HOH B 20 320 114 HOH HOH . E 3 HOH B 21 321 108 HOH HOH . E 3 HOH B 22 322 36 HOH HOH . E 3 HOH B 23 323 47 HOH HOH . E 3 HOH B 24 324 212 HOH HOH . E 3 HOH B 25 325 153 HOH HOH . E 3 HOH B 26 326 25 HOH HOH . E 3 HOH B 27 327 232 HOH HOH . E 3 HOH B 28 328 40 HOH HOH . E 3 HOH B 29 329 166 HOH HOH . E 3 HOH B 30 330 201 HOH HOH . E 3 HOH B 31 331 91 HOH HOH . E 3 HOH B 32 332 106 HOH HOH . E 3 HOH B 33 333 143 HOH HOH . E 3 HOH B 34 334 110 HOH HOH . E 3 HOH B 35 335 10 HOH HOH . E 3 HOH B 36 336 88 HOH HOH . E 3 HOH B 37 337 82 HOH HOH . E 3 HOH B 38 338 165 HOH HOH . E 3 HOH B 39 339 29 HOH HOH . E 3 HOH B 40 340 18 HOH HOH . E 3 HOH B 41 341 146 HOH HOH . E 3 HOH B 42 342 135 HOH HOH . E 3 HOH B 43 343 49 HOH HOH . E 3 HOH B 44 344 7 HOH HOH . E 3 HOH B 45 345 81 HOH HOH . E 3 HOH B 46 346 8 HOH HOH . E 3 HOH B 47 347 63 HOH HOH . E 3 HOH B 48 348 129 HOH HOH . E 3 HOH B 49 349 159 HOH HOH . E 3 HOH B 50 350 77 HOH HOH . E 3 HOH B 51 351 188 HOH HOH . E 3 HOH B 52 352 148 HOH HOH . E 3 HOH B 53 353 113 HOH HOH . E 3 HOH B 54 354 60 HOH HOH . E 3 HOH B 55 355 128 HOH HOH . E 3 HOH B 56 356 31 HOH HOH . E 3 HOH B 57 357 242 HOH HOH . E 3 HOH B 58 358 131 HOH HOH . E 3 HOH B 59 359 203 HOH HOH . E 3 HOH B 60 360 126 HOH HOH . E 3 HOH B 61 361 103 HOH HOH . E 3 HOH B 62 362 219 HOH HOH . E 3 HOH B 63 363 13 HOH HOH . E 3 HOH B 64 364 62 HOH HOH . E 3 HOH B 65 365 190 HOH HOH . E 3 HOH B 66 366 35 HOH HOH . E 3 HOH B 67 367 189 HOH HOH . E 3 HOH B 68 368 210 HOH HOH . E 3 HOH B 69 369 157 HOH HOH . E 3 HOH B 70 370 208 HOH HOH . E 3 HOH B 71 371 130 HOH HOH . E 3 HOH B 72 372 53 HOH HOH . E 3 HOH B 73 373 145 HOH HOH . E 3 HOH B 74 374 193 HOH HOH . E 3 HOH B 75 375 97 HOH HOH . E 3 HOH B 76 376 68 HOH HOH . E 3 HOH B 77 377 186 HOH HOH . E 3 HOH B 78 378 177 HOH HOH . E 3 HOH B 79 379 199 HOH HOH . E 3 HOH B 80 380 137 HOH HOH . E 3 HOH B 81 381 211 HOH HOH . E 3 HOH B 82 382 233 HOH HOH . E 3 HOH B 83 383 245 HOH HOH . E 3 HOH B 84 384 206 HOH HOH . E 3 HOH B 85 385 136 HOH HOH . E 3 HOH B 86 386 69 HOH HOH . E 3 HOH B 87 387 52 HOH HOH . E 3 HOH B 88 388 180 HOH HOH . E 3 HOH B 89 389 156 HOH HOH . E 3 HOH B 90 390 83 HOH HOH . E 3 HOH B 91 391 33 HOH HOH . E 3 HOH B 92 392 228 HOH HOH . E 3 HOH B 93 393 51 HOH HOH . E 3 HOH B 94 394 173 HOH HOH . E 3 HOH B 95 395 102 HOH HOH . E 3 HOH B 96 396 194 HOH HOH . E 3 HOH B 97 397 167 HOH HOH . E 3 HOH B 98 398 246 HOH HOH . E 3 HOH B 99 399 66 HOH HOH . E 3 HOH B 100 400 253 HOH HOH . E 3 HOH B 101 401 65 HOH HOH . E 3 HOH B 102 402 142 HOH HOH . E 3 HOH B 103 403 98 HOH HOH . E 3 HOH B 104 404 152 HOH HOH . E 3 HOH B 105 405 181 HOH HOH . E 3 HOH B 106 406 250 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.916 _atom_site.Cartn_y 32.803 _atom_site.Cartn_z 17.074 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #