data_6JME # _model_server_result.job_id 6L5HxE0LFzfEjj8LTiFmWw _model_server_result.datetime_utc '2024-11-05 04:10:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":412}' # _entry.id 6JME # _exptl.entry_id 6JME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JME _cell.length_a 90.605 _cell.length_b 90.605 _cell.length_c 123.057 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JME _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 M N N ? 8 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 135 A GLN 165 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc2 F OXT ACT . A ACT 405 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc3 K O4 SO4 . A SO4 410 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 L NA NA . A NA 411 1_555 O O HOH . A HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc5 L NA NA . A NA 411 1_555 O O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc6 M NA NA . A NA 412 1_555 O O HOH . A HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc7 N NA NA . A NA 413 1_555 O O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JME _atom_sites.fract_transf_matrix[1][1] 0.011037 _atom_sites.fract_transf_matrix[1][2] 0.006372 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 402 FMN FMN . C 3 ORO A 1 402 403 ORO ORO . D 4 SO4 A 1 403 404 SO4 SO4 . E 4 SO4 A 1 404 405 SO4 SO4 . F 5 ACT A 1 405 406 ACT ACT . G 5 ACT A 1 406 407 ACT ACT . H 5 ACT A 1 407 409 ACT ACT . I 6 LDA A 1 408 1001 LDA DDA . J 7 BVU A 1 409 1111 BVU LIG . K 4 SO4 A 1 410 1 SO4 SO4 . L 8 NA A 1 411 1 NA NA . M 8 NA A 1 412 2 NA NA . N 8 NA A 1 413 3 NA NA . O 9 HOH A 1 501 191 HOH HOH . O 9 HOH A 2 502 89 HOH HOH . O 9 HOH A 3 503 179 HOH HOH . O 9 HOH A 4 504 277 HOH HOH . O 9 HOH A 5 505 91 HOH HOH . O 9 HOH A 6 506 122 HOH HOH . O 9 HOH A 7 507 136 HOH HOH . O 9 HOH A 8 508 114 HOH HOH . O 9 HOH A 9 509 47 HOH HOH . O 9 HOH A 10 510 148 HOH HOH . O 9 HOH A 11 511 126 HOH HOH . O 9 HOH A 12 512 237 HOH HOH . O 9 HOH A 13 513 250 HOH HOH . O 9 HOH A 14 514 228 HOH HOH . O 9 HOH A 15 515 198 HOH HOH . O 9 HOH A 16 516 147 HOH HOH . O 9 HOH A 17 517 149 HOH HOH . O 9 HOH A 18 518 68 HOH HOH . O 9 HOH A 19 519 225 HOH HOH . O 9 HOH A 20 520 262 HOH HOH . O 9 HOH A 21 521 20 HOH HOH . O 9 HOH A 22 522 183 HOH HOH . O 9 HOH A 23 523 135 HOH HOH . O 9 HOH A 24 524 17 HOH HOH . O 9 HOH A 25 525 62 HOH HOH . O 9 HOH A 26 526 14 HOH HOH . O 9 HOH A 27 527 132 HOH HOH . O 9 HOH A 28 528 10 HOH HOH . O 9 HOH A 29 529 97 HOH HOH . O 9 HOH A 30 530 165 HOH HOH . O 9 HOH A 31 531 78 HOH HOH . O 9 HOH A 32 532 50 HOH HOH . O 9 HOH A 33 533 207 HOH HOH . O 9 HOH A 34 534 108 HOH HOH . O 9 HOH A 35 535 99 HOH HOH . O 9 HOH A 36 536 36 HOH HOH . O 9 HOH A 37 537 111 HOH HOH . O 9 HOH A 38 538 127 HOH HOH . O 9 HOH A 39 539 130 HOH HOH . O 9 HOH A 40 540 128 HOH HOH . O 9 HOH A 41 541 7 HOH HOH . O 9 HOH A 42 542 160 HOH HOH . O 9 HOH A 43 543 133 HOH HOH . O 9 HOH A 44 544 272 HOH HOH . O 9 HOH A 45 545 115 HOH HOH . O 9 HOH A 46 546 88 HOH HOH . O 9 HOH A 47 547 173 HOH HOH . O 9 HOH A 48 548 242 HOH HOH . O 9 HOH A 49 549 3 HOH HOH . O 9 HOH A 50 550 106 HOH HOH . O 9 HOH A 51 551 201 HOH HOH . O 9 HOH A 52 552 26 HOH HOH . O 9 HOH A 53 553 251 HOH HOH . O 9 HOH A 54 554 96 HOH HOH . O 9 HOH A 55 555 87 HOH HOH . O 9 HOH A 56 556 19 HOH HOH . O 9 HOH A 57 557 27 HOH HOH . O 9 HOH A 58 558 213 HOH HOH . O 9 HOH A 59 559 11 HOH HOH . O 9 HOH A 60 560 95 HOH HOH . O 9 HOH A 61 561 168 HOH HOH . O 9 HOH A 62 562 4 HOH HOH . O 9 HOH A 63 563 52 HOH HOH . O 9 HOH A 64 564 44 HOH HOH . O 9 HOH A 65 565 146 HOH HOH . O 9 HOH A 66 566 13 HOH HOH . O 9 HOH A 67 567 74 HOH HOH . O 9 HOH A 68 568 152 HOH HOH . O 9 HOH A 69 569 254 HOH HOH . O 9 HOH A 70 570 53 HOH HOH . O 9 HOH A 71 571 116 HOH HOH . O 9 HOH A 72 572 205 HOH HOH . O 9 HOH A 73 573 2 HOH HOH . O 9 HOH A 74 574 93 HOH HOH . O 9 HOH A 75 575 256 HOH HOH . O 9 HOH A 76 576 246 HOH HOH . O 9 HOH A 77 577 28 HOH HOH . O 9 HOH A 78 578 121 HOH HOH . O 9 HOH A 79 579 15 HOH HOH . O 9 HOH A 80 580 38 HOH HOH . O 9 HOH A 81 581 154 HOH HOH . O 9 HOH A 82 582 220 HOH HOH . O 9 HOH A 83 583 33 HOH HOH . O 9 HOH A 84 584 12 HOH HOH . O 9 HOH A 85 585 141 HOH HOH . O 9 HOH A 86 586 197 HOH HOH . O 9 HOH A 87 587 18 HOH HOH . O 9 HOH A 88 588 56 HOH HOH . O 9 HOH A 89 589 85 HOH HOH . O 9 HOH A 90 590 31 HOH HOH . O 9 HOH A 91 591 8 HOH HOH . O 9 HOH A 92 592 59 HOH HOH . O 9 HOH A 93 593 72 HOH HOH . O 9 HOH A 94 594 125 HOH HOH . O 9 HOH A 95 595 259 HOH HOH . O 9 HOH A 96 596 39 HOH HOH . O 9 HOH A 97 597 143 HOH HOH . O 9 HOH A 98 598 41 HOH HOH . O 9 HOH A 99 599 234 HOH HOH . O 9 HOH A 100 600 238 HOH HOH . O 9 HOH A 101 601 58 HOH HOH . O 9 HOH A 102 602 46 HOH HOH . O 9 HOH A 103 603 71 HOH HOH . O 9 HOH A 104 604 32 HOH HOH . O 9 HOH A 105 605 37 HOH HOH . O 9 HOH A 106 606 117 HOH HOH . O 9 HOH A 107 607 158 HOH HOH . O 9 HOH A 108 608 63 HOH HOH . O 9 HOH A 109 609 54 HOH HOH . O 9 HOH A 110 610 35 HOH HOH . O 9 HOH A 111 611 177 HOH HOH . O 9 HOH A 112 612 82 HOH HOH . O 9 HOH A 113 613 25 HOH HOH . O 9 HOH A 114 614 21 HOH HOH . O 9 HOH A 115 615 79 HOH HOH . O 9 HOH A 116 616 138 HOH HOH . O 9 HOH A 117 617 215 HOH HOH . O 9 HOH A 118 618 81 HOH HOH . O 9 HOH A 119 619 98 HOH HOH . O 9 HOH A 120 620 73 HOH HOH . O 9 HOH A 121 621 76 HOH HOH . O 9 HOH A 122 622 6 HOH HOH . O 9 HOH A 123 623 280 HOH HOH . O 9 HOH A 124 624 170 HOH HOH . O 9 HOH A 125 625 29 HOH HOH . O 9 HOH A 126 626 61 HOH HOH . O 9 HOH A 127 627 112 HOH HOH . O 9 HOH A 128 628 77 HOH HOH . O 9 HOH A 129 629 221 HOH HOH . O 9 HOH A 130 630 102 HOH HOH . O 9 HOH A 131 631 265 HOH HOH . O 9 HOH A 132 632 203 HOH HOH . O 9 HOH A 133 633 83 HOH HOH . O 9 HOH A 134 634 124 HOH HOH . O 9 HOH A 135 635 45 HOH HOH . O 9 HOH A 136 636 252 HOH HOH . O 9 HOH A 137 637 131 HOH HOH . O 9 HOH A 138 638 119 HOH HOH . O 9 HOH A 139 639 65 HOH HOH . O 9 HOH A 140 640 94 HOH HOH . O 9 HOH A 141 641 192 HOH HOH . O 9 HOH A 142 642 257 HOH HOH . O 9 HOH A 143 643 67 HOH HOH . O 9 HOH A 144 644 55 HOH HOH . O 9 HOH A 145 645 66 HOH HOH . O 9 HOH A 146 646 236 HOH HOH . O 9 HOH A 147 647 176 HOH HOH . O 9 HOH A 148 648 9 HOH HOH . O 9 HOH A 149 649 139 HOH HOH . O 9 HOH A 150 650 51 HOH HOH . O 9 HOH A 151 651 24 HOH HOH . O 9 HOH A 152 652 70 HOH HOH . O 9 HOH A 153 653 57 HOH HOH . O 9 HOH A 154 654 244 HOH HOH . O 9 HOH A 155 655 30 HOH HOH . O 9 HOH A 156 656 137 HOH HOH . O 9 HOH A 157 657 178 HOH HOH . O 9 HOH A 158 658 229 HOH HOH . O 9 HOH A 159 659 212 HOH HOH . O 9 HOH A 160 660 120 HOH HOH . O 9 HOH A 161 661 134 HOH HOH . O 9 HOH A 162 662 253 HOH HOH . O 9 HOH A 163 663 189 HOH HOH . O 9 HOH A 164 664 140 HOH HOH . O 9 HOH A 165 665 144 HOH HOH . O 9 HOH A 166 666 43 HOH HOH . O 9 HOH A 167 667 222 HOH HOH . O 9 HOH A 168 668 159 HOH HOH . O 9 HOH A 169 669 64 HOH HOH . O 9 HOH A 170 670 208 HOH HOH . O 9 HOH A 171 671 92 HOH HOH . O 9 HOH A 172 672 103 HOH HOH . O 9 HOH A 173 673 107 HOH HOH . O 9 HOH A 174 674 206 HOH HOH . O 9 HOH A 175 675 22 HOH HOH . O 9 HOH A 176 676 166 HOH HOH . O 9 HOH A 177 677 196 HOH HOH . O 9 HOH A 178 678 193 HOH HOH . O 9 HOH A 179 679 69 HOH HOH . O 9 HOH A 180 680 16 HOH HOH . O 9 HOH A 181 681 240 HOH HOH . O 9 HOH A 182 682 150 HOH HOH . O 9 HOH A 183 683 49 HOH HOH . O 9 HOH A 184 684 80 HOH HOH . O 9 HOH A 185 685 48 HOH HOH . O 9 HOH A 186 686 109 HOH HOH . O 9 HOH A 187 687 239 HOH HOH . O 9 HOH A 188 688 199 HOH HOH . O 9 HOH A 189 689 1 HOH HOH . O 9 HOH A 190 690 255 HOH HOH . O 9 HOH A 191 691 100 HOH HOH . O 9 HOH A 192 692 218 HOH HOH . O 9 HOH A 193 693 211 HOH HOH . O 9 HOH A 194 694 185 HOH HOH . O 9 HOH A 195 695 171 HOH HOH . O 9 HOH A 196 696 204 HOH HOH . O 9 HOH A 197 697 284 HOH HOH . O 9 HOH A 198 698 84 HOH HOH . O 9 HOH A 199 699 194 HOH HOH . O 9 HOH A 200 700 5 HOH HOH . O 9 HOH A 201 701 90 HOH HOH . O 9 HOH A 202 702 60 HOH HOH . O 9 HOH A 203 703 151 HOH HOH . O 9 HOH A 204 704 243 HOH HOH . O 9 HOH A 205 705 214 HOH HOH . O 9 HOH A 206 706 118 HOH HOH . O 9 HOH A 207 707 110 HOH HOH . O 9 HOH A 208 708 157 HOH HOH . O 9 HOH A 209 709 23 HOH HOH . O 9 HOH A 210 710 42 HOH HOH . O 9 HOH A 211 711 227 HOH HOH . O 9 HOH A 212 712 230 HOH HOH . O 9 HOH A 213 713 175 HOH HOH . O 9 HOH A 214 714 271 HOH HOH . O 9 HOH A 215 715 40 HOH HOH . O 9 HOH A 216 716 172 HOH HOH . O 9 HOH A 217 717 209 HOH HOH . O 9 HOH A 218 718 263 HOH HOH . O 9 HOH A 219 719 181 HOH HOH . O 9 HOH A 220 720 232 HOH HOH . O 9 HOH A 221 721 145 HOH HOH . O 9 HOH A 222 722 153 HOH HOH . O 9 HOH A 223 723 261 HOH HOH . O 9 HOH A 224 724 224 HOH HOH . O 9 HOH A 225 725 75 HOH HOH . O 9 HOH A 226 726 270 HOH HOH . O 9 HOH A 227 727 186 HOH HOH . O 9 HOH A 228 728 200 HOH HOH . O 9 HOH A 229 729 162 HOH HOH . O 9 HOH A 230 730 163 HOH HOH . O 9 HOH A 231 731 248 HOH HOH . O 9 HOH A 232 732 142 HOH HOH . O 9 HOH A 233 733 258 HOH HOH . O 9 HOH A 234 734 249 HOH HOH . O 9 HOH A 235 735 217 HOH HOH . O 9 HOH A 236 736 233 HOH HOH . O 9 HOH A 237 737 182 HOH HOH . O 9 HOH A 238 738 105 HOH HOH . O 9 HOH A 239 739 264 HOH HOH . O 9 HOH A 240 740 216 HOH HOH . O 9 HOH A 241 741 188 HOH HOH . O 9 HOH A 242 742 267 HOH HOH . O 9 HOH A 243 743 283 HOH HOH . O 9 HOH A 244 744 278 HOH HOH . O 9 HOH A 245 745 226 HOH HOH . O 9 HOH A 246 746 223 HOH HOH . O 9 HOH A 247 747 275 HOH HOH . O 9 HOH A 248 748 101 HOH HOH . O 9 HOH A 249 749 247 HOH HOH . O 9 HOH A 250 750 282 HOH HOH . O 9 HOH A 251 751 167 HOH HOH . O 9 HOH A 252 752 155 HOH HOH . O 9 HOH A 253 753 202 HOH HOH . O 9 HOH A 254 754 180 HOH HOH . O 9 HOH A 255 755 285 HOH HOH . O 9 HOH A 256 756 113 HOH HOH . O 9 HOH A 257 757 266 HOH HOH . O 9 HOH A 258 758 195 HOH HOH . O 9 HOH A 259 759 260 HOH HOH . O 9 HOH A 260 760 86 HOH HOH . O 9 HOH A 261 761 169 HOH HOH . O 9 HOH A 262 762 273 HOH HOH . O 9 HOH A 263 763 276 HOH HOH . O 9 HOH A 264 764 123 HOH HOH . O 9 HOH A 265 765 241 HOH HOH . O 9 HOH A 266 766 268 HOH HOH . O 9 HOH A 267 767 281 HOH HOH . O 9 HOH A 268 768 274 HOH HOH . O 9 HOH A 269 769 245 HOH HOH . O 9 HOH A 270 770 164 HOH HOH . O 9 HOH A 271 771 129 HOH HOH . O 9 HOH A 272 772 210 HOH HOH . O 9 HOH A 273 773 161 HOH HOH . O 9 HOH A 274 774 187 HOH HOH . O 9 HOH A 275 775 174 HOH HOH . O 9 HOH A 276 776 269 HOH HOH . O 9 HOH A 277 777 279 HOH HOH . O 9 HOH A 278 778 219 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 8 _atom_site.Cartn_x -26.971 _atom_site.Cartn_y -46.475 _atom_site.Cartn_z -11.918 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 412 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #