data_6JMF # _model_server_result.job_id h2kcJrInEruZE7O2KqjGLw _model_server_result.datetime_utc '2025-01-25 13:23:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 6JMF # _exptl.entry_id 6JMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.444 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(1R,2S)-2-aminocyclohexyl]amino}-5-cyano-2-[(3-methylphenyl)amino]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JMF _cell.length_a 80.79 _cell.length_b 80.79 _cell.length_c 131.668 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H24 N6 O' _chem_comp.formula_weight 364.444 _chem_comp.id 9FC _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(1R,2S)-2-aminocyclohexyl]amino}-5-cyano-2-[(3-methylphenyl)amino]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C14 9FC sing 1 n n C15 C14 9FC doub 2 n y C15 C16 9FC sing 3 n y C14 C13 9FC sing 4 n y C16 C17 9FC doub 5 n y C22 C21 9FC sing 6 n n C22 C23 9FC sing 7 n n C21 C20 9FC sing 8 n n C13 C12 9FC doub 9 n y C17 C12 9FC sing 10 n y C12 N10 9FC sing 11 n n C20 C19 9FC sing 12 n n C23 N24 9FC sing 13 n n C23 C18 9FC sing 14 n n N10 C8 9FC sing 15 n n C18 C19 9FC sing 16 n n C18 N11 9FC sing 17 n n N9 C8 9FC doub 18 n y N9 C4 9FC sing 19 n y C8 C7 9FC sing 20 n y O26 C1 9FC doub 21 n n N11 C4 9FC sing 22 n n C4 C5 9FC doub 23 n y C7 C1 9FC sing 24 n n C7 C6 9FC doub 25 n y C1 N27 9FC sing 26 n n C5 C6 9FC sing 27 n y C5 C2 9FC sing 28 n n C2 N25 9FC trip 29 n n C6 H1 9FC sing 30 n n C3 H2 9FC sing 31 n n C3 H3 9FC sing 32 n n C3 H4 9FC sing 33 n n N10 H5 9FC sing 34 n n N11 H6 9FC sing 35 n n C13 H7 9FC sing 36 n n C15 H8 9FC sing 37 n n C16 H9 9FC sing 38 n n C17 H10 9FC sing 39 n n C18 H11 9FC sing 40 n n C19 H12 9FC sing 41 n n C19 H13 9FC sing 42 n n C20 H14 9FC sing 43 n n C20 H15 9FC sing 44 n n C21 H16 9FC sing 45 n n C21 H17 9FC sing 46 n n C22 H18 9FC sing 47 n n C22 H19 9FC sing 48 n n C23 H20 9FC sing 49 n n N24 H21 9FC sing 50 n n N24 H22 9FC sing 51 n n N27 H24 9FC sing 52 n n N27 H25 9FC sing 53 n n # _atom_sites.entry_id 6JMF _atom_sites.fract_transf_matrix[1][1] 0.012378 _atom_sites.fract_transf_matrix[1][2] 0.007146 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 901 SO4 SO4 . C 2 SO4 A 1 902 902 SO4 SO4 . D 3 9FC A 1 903 951 9FC DSJ . E 4 HOH A 1 1001 1097 HOH HOH . E 4 HOH A 2 1002 1110 HOH HOH . E 4 HOH A 3 1003 1107 HOH HOH . E 4 HOH A 4 1004 1072 HOH HOH . E 4 HOH A 5 1005 1148 HOH HOH . E 4 HOH A 6 1006 1125 HOH HOH . E 4 HOH A 7 1007 1073 HOH HOH . E 4 HOH A 8 1008 1103 HOH HOH . E 4 HOH A 9 1009 1068 HOH HOH . E 4 HOH A 10 1010 1043 HOH HOH . E 4 HOH A 11 1011 1138 HOH HOH . E 4 HOH A 12 1012 1022 HOH HOH . E 4 HOH A 13 1013 1030 HOH HOH . E 4 HOH A 14 1014 1076 HOH HOH . E 4 HOH A 15 1015 1047 HOH HOH . E 4 HOH A 16 1016 1098 HOH HOH . E 4 HOH A 17 1017 1031 HOH HOH . E 4 HOH A 18 1018 1127 HOH HOH . E 4 HOH A 19 1019 1115 HOH HOH . E 4 HOH A 20 1020 1094 HOH HOH . E 4 HOH A 21 1021 1088 HOH HOH . E 4 HOH A 22 1022 1050 HOH HOH . E 4 HOH A 23 1023 1090 HOH HOH . E 4 HOH A 24 1024 1048 HOH HOH . E 4 HOH A 25 1025 1018 HOH HOH . E 4 HOH A 26 1026 1105 HOH HOH . E 4 HOH A 27 1027 1104 HOH HOH . E 4 HOH A 28 1028 1060 HOH HOH . E 4 HOH A 29 1029 1017 HOH HOH . E 4 HOH A 30 1030 1087 HOH HOH . E 4 HOH A 31 1031 1101 HOH HOH . E 4 HOH A 32 1032 1095 HOH HOH . E 4 HOH A 33 1033 1142 HOH HOH . E 4 HOH A 34 1034 1154 HOH HOH . E 4 HOH A 35 1035 1012 HOH HOH . E 4 HOH A 36 1036 1033 HOH HOH . E 4 HOH A 37 1037 1032 HOH HOH . E 4 HOH A 38 1038 1025 HOH HOH . E 4 HOH A 39 1039 1062 HOH HOH . E 4 HOH A 40 1040 1053 HOH HOH . E 4 HOH A 41 1041 1044 HOH HOH . E 4 HOH A 42 1042 1078 HOH HOH . E 4 HOH A 43 1043 1016 HOH HOH . E 4 HOH A 44 1044 1131 HOH HOH . E 4 HOH A 45 1045 1096 HOH HOH . E 4 HOH A 46 1046 1027 HOH HOH . E 4 HOH A 47 1047 1002 HOH HOH . E 4 HOH A 48 1048 1045 HOH HOH . E 4 HOH A 49 1049 1020 HOH HOH . E 4 HOH A 50 1050 1086 HOH HOH . E 4 HOH A 51 1051 1005 HOH HOH . E 4 HOH A 52 1052 1042 HOH HOH . E 4 HOH A 53 1053 1067 HOH HOH . E 4 HOH A 54 1054 1146 HOH HOH . E 4 HOH A 55 1055 1015 HOH HOH . E 4 HOH A 56 1056 1007 HOH HOH . E 4 HOH A 57 1057 1079 HOH HOH . E 4 HOH A 58 1058 1054 HOH HOH . E 4 HOH A 59 1059 1014 HOH HOH . E 4 HOH A 60 1060 1010 HOH HOH . E 4 HOH A 61 1061 1091 HOH HOH . E 4 HOH A 62 1062 1144 HOH HOH . E 4 HOH A 63 1063 1039 HOH HOH . E 4 HOH A 64 1064 1056 HOH HOH . E 4 HOH A 65 1065 1141 HOH HOH . E 4 HOH A 66 1066 1009 HOH HOH . E 4 HOH A 67 1067 1019 HOH HOH . E 4 HOH A 68 1068 1083 HOH HOH . E 4 HOH A 69 1069 1029 HOH HOH . E 4 HOH A 70 1070 1140 HOH HOH . E 4 HOH A 71 1071 1108 HOH HOH . E 4 HOH A 72 1072 1093 HOH HOH . E 4 HOH A 73 1073 1155 HOH HOH . E 4 HOH A 74 1074 1013 HOH HOH . E 4 HOH A 75 1075 1089 HOH HOH . E 4 HOH A 76 1076 1081 HOH HOH . E 4 HOH A 77 1077 1034 HOH HOH . E 4 HOH A 78 1078 1099 HOH HOH . E 4 HOH A 79 1079 1021 HOH HOH . E 4 HOH A 80 1080 1057 HOH HOH . E 4 HOH A 81 1081 1119 HOH HOH . E 4 HOH A 82 1082 1075 HOH HOH . E 4 HOH A 83 1083 1120 HOH HOH . E 4 HOH A 84 1084 1082 HOH HOH . E 4 HOH A 85 1085 1041 HOH HOH . E 4 HOH A 86 1086 1069 HOH HOH . E 4 HOH A 87 1087 1011 HOH HOH . E 4 HOH A 88 1088 1003 HOH HOH . E 4 HOH A 89 1089 1153 HOH HOH . E 4 HOH A 90 1090 1026 HOH HOH . E 4 HOH A 91 1091 1004 HOH HOH . E 4 HOH A 92 1092 1121 HOH HOH . E 4 HOH A 93 1093 1134 HOH HOH . E 4 HOH A 94 1094 1092 HOH HOH . E 4 HOH A 95 1095 1152 HOH HOH . E 4 HOH A 96 1096 1006 HOH HOH . E 4 HOH A 97 1097 1037 HOH HOH . E 4 HOH A 98 1098 1084 HOH HOH . E 4 HOH A 99 1099 1158 HOH HOH . E 4 HOH A 100 1100 1106 HOH HOH . E 4 HOH A 101 1101 1074 HOH HOH . E 4 HOH A 102 1102 1071 HOH HOH . E 4 HOH A 103 1103 1149 HOH HOH . E 4 HOH A 104 1104 1024 HOH HOH . E 4 HOH A 105 1105 1051 HOH HOH . E 4 HOH A 106 1106 1102 HOH HOH . E 4 HOH A 107 1107 1061 HOH HOH . E 4 HOH A 108 1108 1038 HOH HOH . E 4 HOH A 109 1109 1008 HOH HOH . E 4 HOH A 110 1110 1112 HOH HOH . E 4 HOH A 111 1111 1036 HOH HOH . E 4 HOH A 112 1112 1049 HOH HOH . E 4 HOH A 113 1113 1070 HOH HOH . E 4 HOH A 114 1114 1001 HOH HOH . E 4 HOH A 115 1115 1065 HOH HOH . E 4 HOH A 116 1116 1077 HOH HOH . E 4 HOH A 117 1117 1058 HOH HOH . E 4 HOH A 118 1118 1052 HOH HOH . E 4 HOH A 119 1119 1111 HOH HOH . E 4 HOH A 120 1120 1064 HOH HOH . E 4 HOH A 121 1121 1063 HOH HOH . E 4 HOH A 122 1122 1028 HOH HOH . E 4 HOH A 123 1123 1035 HOH HOH . E 4 HOH A 124 1124 1085 HOH HOH . E 4 HOH A 125 1125 1151 HOH HOH . E 4 HOH A 126 1126 1109 HOH HOH . E 4 HOH A 127 1127 1136 HOH HOH . E 4 HOH A 128 1128 1157 HOH HOH . E 4 HOH A 129 1129 1066 HOH HOH . E 4 HOH A 130 1130 1080 HOH HOH . E 4 HOH A 131 1131 1059 HOH HOH . E 4 HOH A 132 1132 1156 HOH HOH . E 4 HOH A 133 1133 1114 HOH HOH . E 4 HOH A 134 1134 1117 HOH HOH . E 4 HOH A 135 1135 1124 HOH HOH . E 4 HOH A 136 1136 1123 HOH HOH . E 4 HOH A 137 1137 1139 HOH HOH . E 4 HOH A 138 1138 1135 HOH HOH . E 4 HOH A 139 1139 1055 HOH HOH . E 4 HOH A 140 1140 1040 HOH HOH . E 4 HOH A 141 1141 1132 HOH HOH . E 4 HOH A 142 1142 1100 HOH HOH . E 4 HOH A 143 1143 1118 HOH HOH . E 4 HOH A 144 1144 1046 HOH HOH . E 4 HOH A 145 1145 1130 HOH HOH . E 4 HOH A 146 1146 1129 HOH HOH . E 4 HOH A 147 1147 1128 HOH HOH . E 4 HOH A 148 1148 1147 HOH HOH . E 4 HOH A 149 1149 1122 HOH HOH . E 4 HOH A 150 1150 1150 HOH HOH . E 4 HOH A 151 1151 1113 HOH HOH . E 4 HOH A 152 1152 1126 HOH HOH . E 4 HOH A 153 1153 1116 HOH HOH . E 4 HOH A 154 1154 1137 HOH HOH . E 4 HOH A 155 1155 1143 HOH HOH . E 4 HOH A 156 1156 1023 HOH HOH . E 4 HOH A 157 1157 1133 HOH HOH . E 4 HOH A 158 1158 1145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 9FC . . . D 3 -12.12 29.339 9.994 1 19.95 ? C7 9FC 903 A 1 HETATM 2 C C4 9FC . . . D 3 -14.81 29.207 9.605 1 22.09 ? C4 9FC 903 A 1 HETATM 3 C C5 9FC . . . D 3 -14.252 28.714 10.767 1 22.2 ? C5 9FC 903 A 1 HETATM 4 C C6 9FC . . . D 3 -12.89 28.77 10.974 1 21.62 ? C6 9FC 903 A 1 HETATM 5 C C3 9FC . . . D 3 -10.181 32.937 4.23 1 23.92 ? C3 9FC 903 A 1 HETATM 6 C C2 9FC . . . D 3 -15.001 28.096 11.814 1 24.12 ? C2 9FC 903 A 1 HETATM 7 C C1 9FC . . . D 3 -10.664 29.394 10.207 1 18.96 ? C1 9FC 903 A 1 HETATM 8 C C8 9FC . . . D 3 -12.722 29.82 8.853 1 20.79 ? C8 9FC 903 A 1 HETATM 9 N N9 9FC . . . D 3 -14.048 29.763 8.643 1 21.73 ? N9 9FC 903 A 1 HETATM 10 N N10 9FC . . . D 3 -11.838 30.358 7.935 1 20.81 ? N10 9FC 903 A 1 HETATM 11 N N11 9FC . . . D 3 -16.22 29.091 9.488 1 22.22 ? N11 9FC 903 A 1 HETATM 12 C C12 9FC . . . D 3 -12.134 30.979 6.739 1 21.57 ? C12 9FC 903 A 1 HETATM 13 C C13 9FC . . . D 3 -11.086 31.607 6.104 1 21.23 ? C13 9FC 903 A 1 HETATM 14 C C14 9FC . . . D 3 -11.304 32.255 4.916 1 21.72 ? C14 9FC 903 A 1 HETATM 15 C C15 9FC . . . D 3 -12.565 32.274 4.368 1 22.48 ? C15 9FC 903 A 1 HETATM 16 C C16 9FC . . . D 3 -13.608 31.639 5.005 1 22.23 ? C16 9FC 903 A 1 HETATM 17 C C17 9FC . . . D 3 -13.397 30.987 6.198 1 21.99 ? C17 9FC 903 A 1 HETATM 18 C C18 9FC . . . D 3 -16.752 29.433 8.169 1 22.88 ? C18 9FC 903 A 1 HETATM 19 C C19 9FC . . . D 3 -18.248 29.683 8.251 1 23.9 ? C19 9FC 903 A 1 HETATM 20 C C20 9FC . . . D 3 -18.785 30.107 6.891 1 24.07 ? C20 9FC 903 A 1 HETATM 21 C C21 9FC . . . D 3 -18.43 29.131 5.782 1 23.79 ? C21 9FC 903 A 1 HETATM 22 C C22 9FC . . . D 3 -16.942 28.873 5.749 1 22.99 ? C22 9FC 903 A 1 HETATM 23 C C23 9FC . . . D 3 -16.455 28.389 7.099 1 22.12 ? C23 9FC 903 A 1 HETATM 24 N N24 9FC . . . D 3 -17.058 27.098 7.385 1 22.49 ? N24 9FC 903 A 1 HETATM 25 N N25 9FC . . . D 3 -15.585 27.487 12.623 1 25.21 ? N25 9FC 903 A 1 HETATM 26 O O26 9FC . . . D 3 -9.889 29.891 9.394 1 16.87 ? O26 9FC 903 A 1 HETATM 27 N N27 9FC . . . D 3 -10.333 28.829 11.399 1 16.74 ? N27 9FC 903 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #