data_6JMN # _model_server_result.job_id 0JEJThWk5Z_meSf18AoeRw _model_server_result.datetime_utc '2024-11-10 01:24:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6JMN # _exptl.entry_id 6JMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JMN _cell.length_a 48.496 _cell.length_b 108.684 _cell.length_c 122.442 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 108 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 211 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 391 A ASN 391 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 456 A ASN 456 1_555 D C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 299 n n C1 O1 NAG sing 300 n n C1 O5 NAG sing 301 n n C1 H1 NAG sing 302 n n C2 C3 NAG sing 303 n n C2 N2 NAG sing 304 n n C2 H2 NAG sing 305 n n C3 C4 NAG sing 306 n n C3 O3 NAG sing 307 n n C3 H3 NAG sing 308 n n C4 C5 NAG sing 309 n n C4 O4 NAG sing 310 n n C4 H4 NAG sing 311 n n C5 C6 NAG sing 312 n n C5 O5 NAG sing 313 n n C5 H5 NAG sing 314 n n C6 O6 NAG sing 315 n n C6 H61 NAG sing 316 n n C6 H62 NAG sing 317 n n C7 C8 NAG sing 318 n n C7 N2 NAG sing 319 n n C7 O7 NAG doub 320 n n C8 H81 NAG sing 321 n n C8 H82 NAG sing 322 n n C8 H83 NAG sing 323 n n N2 HN2 NAG sing 324 n n O1 HO1 NAG sing 325 n n O3 HO3 NAG sing 326 n n O4 HO4 NAG sing 327 n n O6 HO6 NAG sing 328 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6JMN _atom_sites.fract_transf_matrix[1][1] 0.02062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BV0 A 1 601 1 BV0 852 . C 3 NAG A 1 602 601 NAG NAG . D 3 NAG A 1 603 602 NAG NAG . E 4 HOH A 1 701 10 HOH HOH . E 4 HOH A 2 702 4 HOH HOH . E 4 HOH A 3 703 14 HOH HOH . E 4 HOH A 4 704 1 HOH HOH . E 4 HOH A 5 705 6 HOH HOH . E 4 HOH A 6 706 8 HOH HOH . E 4 HOH A 7 707 17 HOH HOH . E 4 HOH A 8 708 11 HOH HOH . E 4 HOH A 9 709 3 HOH HOH . E 4 HOH A 10 710 16 HOH HOH . E 4 HOH A 11 711 2 HOH HOH . E 4 HOH A 12 712 5 HOH HOH . E 4 HOH A 13 713 7 HOH HOH . E 4 HOH A 14 714 12 HOH HOH . E 4 HOH A 15 715 13 HOH HOH . E 4 HOH A 16 716 18 HOH HOH . E 4 HOH A 17 717 15 HOH HOH . E 4 HOH A 18 718 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 9.475 23.753 129.259 1 67.6 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . C 3 10.524 24.744 129.795 1 68.5 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . C 3 9.907 26.125 130.025 1 68.34 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . C 3 9.187 26.608 128.776 1 70.6 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . C 3 8.141 25.579 128.376 1 73.16 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . C 3 7.392 25.95 127.118 1 70.59 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . C 3 12.271 23.569 131.064 1 70.08 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . C 3 12.732 23.139 132.424 1 66.15 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . C 3 11.12 24.248 131.025 1 66.38 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . C 3 10.934 27.047 130.375 1 71.05 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . C 3 8.558 27.861 129.02 1 74.7 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . C 3 8.793 24.328 128.121 1 72.35 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . C 3 7.899 25.259 125.985 1 81.77 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . C 3 12.909 23.312 130.049 1 72.05 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #