data_6JMX # _model_server_result.job_id GQ39-Ka4LhVANGeTDGrFyw _model_server_result.datetime_utc '2024-10-11 00:29:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6JMX # _exptl.entry_id 6JMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JMX _cell.length_a 114.519 _cell.length_b 114.519 _cell.length_c 57.908 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 149 A HIS 168 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A OD1 ASP 153 A ASP 172 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A ND1 HIS 230 A HIS 249 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C O3 TAR . A TAR 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C O4 TAR . A TAR 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6JMX _atom_sites.fract_transf_matrix[1][1] 0.008732 _atom_sites.fract_transf_matrix[1][2] 0.005042 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 300 ZN ZN . C 3 TAR A 1 302 302 TAR TAR . D 4 GOL A 1 303 305 GOL GOL . E 4 GOL A 1 304 306 GOL GOL . F 4 GOL A 1 305 307 GOL GOL . G 5 HOH A 1 401 35 HOH HOH . G 5 HOH A 2 402 41 HOH HOH . G 5 HOH A 3 403 221 HOH HOH . G 5 HOH A 4 404 182 HOH HOH . G 5 HOH A 5 405 169 HOH HOH . G 5 HOH A 6 406 200 HOH HOH . G 5 HOH A 7 407 10 HOH HOH . G 5 HOH A 8 408 86 HOH HOH . G 5 HOH A 9 409 57 HOH HOH . G 5 HOH A 10 410 117 HOH HOH . G 5 HOH A 11 411 113 HOH HOH . G 5 HOH A 12 412 82 HOH HOH . G 5 HOH A 13 413 11 HOH HOH . G 5 HOH A 14 414 5 HOH HOH . G 5 HOH A 15 415 225 HOH HOH . G 5 HOH A 16 416 175 HOH HOH . G 5 HOH A 17 417 216 HOH HOH . G 5 HOH A 18 418 27 HOH HOH . G 5 HOH A 19 419 142 HOH HOH . G 5 HOH A 20 420 242 HOH HOH . G 5 HOH A 21 421 47 HOH HOH . G 5 HOH A 22 422 20 HOH HOH . G 5 HOH A 23 423 177 HOH HOH . G 5 HOH A 24 424 114 HOH HOH . G 5 HOH A 25 425 13 HOH HOH . G 5 HOH A 26 426 138 HOH HOH . G 5 HOH A 27 427 48 HOH HOH . G 5 HOH A 28 428 62 HOH HOH . G 5 HOH A 29 429 132 HOH HOH . G 5 HOH A 30 430 55 HOH HOH . G 5 HOH A 31 431 49 HOH HOH . G 5 HOH A 32 432 162 HOH HOH . G 5 HOH A 33 433 81 HOH HOH . G 5 HOH A 34 434 203 HOH HOH . G 5 HOH A 35 435 78 HOH HOH . G 5 HOH A 36 436 164 HOH HOH . G 5 HOH A 37 437 42 HOH HOH . G 5 HOH A 38 438 54 HOH HOH . G 5 HOH A 39 439 9 HOH HOH . G 5 HOH A 40 440 110 HOH HOH . G 5 HOH A 41 441 178 HOH HOH . G 5 HOH A 42 442 90 HOH HOH . G 5 HOH A 43 443 126 HOH HOH . G 5 HOH A 44 444 244 HOH HOH . G 5 HOH A 45 445 85 HOH HOH . G 5 HOH A 46 446 227 HOH HOH . G 5 HOH A 47 447 99 HOH HOH . G 5 HOH A 48 448 68 HOH HOH . G 5 HOH A 49 449 134 HOH HOH . G 5 HOH A 50 450 226 HOH HOH . G 5 HOH A 51 451 3 HOH HOH . G 5 HOH A 52 452 60 HOH HOH . G 5 HOH A 53 453 45 HOH HOH . G 5 HOH A 54 454 141 HOH HOH . G 5 HOH A 55 455 218 HOH HOH . G 5 HOH A 56 456 22 HOH HOH . G 5 HOH A 57 457 112 HOH HOH . G 5 HOH A 58 458 32 HOH HOH . G 5 HOH A 59 459 173 HOH HOH . G 5 HOH A 60 460 70 HOH HOH . G 5 HOH A 61 461 8 HOH HOH . G 5 HOH A 62 462 166 HOH HOH . G 5 HOH A 63 463 155 HOH HOH . G 5 HOH A 64 464 40 HOH HOH . G 5 HOH A 65 465 34 HOH HOH . G 5 HOH A 66 466 19 HOH HOH . G 5 HOH A 67 467 17 HOH HOH . G 5 HOH A 68 468 37 HOH HOH . G 5 HOH A 69 469 214 HOH HOH . G 5 HOH A 70 470 188 HOH HOH . G 5 HOH A 71 471 118 HOH HOH . G 5 HOH A 72 472 67 HOH HOH . G 5 HOH A 73 473 144 HOH HOH . G 5 HOH A 74 474 1 HOH HOH . G 5 HOH A 75 475 56 HOH HOH . G 5 HOH A 76 476 73 HOH HOH . G 5 HOH A 77 477 119 HOH HOH . G 5 HOH A 78 478 61 HOH HOH . G 5 HOH A 79 479 2 HOH HOH . G 5 HOH A 80 480 18 HOH HOH . G 5 HOH A 81 481 23 HOH HOH . G 5 HOH A 82 482 167 HOH HOH . G 5 HOH A 83 483 154 HOH HOH . G 5 HOH A 84 484 53 HOH HOH . G 5 HOH A 85 485 102 HOH HOH . G 5 HOH A 86 486 190 HOH HOH . G 5 HOH A 87 487 28 HOH HOH . G 5 HOH A 88 488 24 HOH HOH . G 5 HOH A 89 489 92 HOH HOH . G 5 HOH A 90 490 168 HOH HOH . G 5 HOH A 91 491 91 HOH HOH . G 5 HOH A 92 492 84 HOH HOH . G 5 HOH A 93 493 193 HOH HOH . G 5 HOH A 94 494 72 HOH HOH . G 5 HOH A 95 495 74 HOH HOH . G 5 HOH A 96 496 4 HOH HOH . G 5 HOH A 97 497 121 HOH HOH . G 5 HOH A 98 498 29 HOH HOH . G 5 HOH A 99 499 115 HOH HOH . G 5 HOH A 100 500 250 HOH HOH . G 5 HOH A 101 501 83 HOH HOH . G 5 HOH A 102 502 94 HOH HOH . G 5 HOH A 103 503 237 HOH HOH . G 5 HOH A 104 504 201 HOH HOH . G 5 HOH A 105 505 77 HOH HOH . G 5 HOH A 106 506 71 HOH HOH . G 5 HOH A 107 507 208 HOH HOH . G 5 HOH A 108 508 163 HOH HOH . G 5 HOH A 109 509 209 HOH HOH . G 5 HOH A 110 510 139 HOH HOH . G 5 HOH A 111 511 180 HOH HOH . G 5 HOH A 112 512 15 HOH HOH . G 5 HOH A 113 513 181 HOH HOH . G 5 HOH A 114 514 36 HOH HOH . G 5 HOH A 115 515 50 HOH HOH . G 5 HOH A 116 516 39 HOH HOH . G 5 HOH A 117 517 206 HOH HOH . G 5 HOH A 118 518 66 HOH HOH . G 5 HOH A 119 519 148 HOH HOH . G 5 HOH A 120 520 156 HOH HOH . G 5 HOH A 121 521 195 HOH HOH . G 5 HOH A 122 522 107 HOH HOH . G 5 HOH A 123 523 58 HOH HOH . G 5 HOH A 124 524 31 HOH HOH . G 5 HOH A 125 525 26 HOH HOH . G 5 HOH A 126 526 33 HOH HOH . G 5 HOH A 127 527 21 HOH HOH . G 5 HOH A 128 528 220 HOH HOH . G 5 HOH A 129 529 151 HOH HOH . G 5 HOH A 130 530 25 HOH HOH . G 5 HOH A 131 531 127 HOH HOH . G 5 HOH A 132 532 69 HOH HOH . G 5 HOH A 133 533 7 HOH HOH . G 5 HOH A 134 534 46 HOH HOH . G 5 HOH A 135 535 243 HOH HOH . G 5 HOH A 136 536 106 HOH HOH . G 5 HOH A 137 537 158 HOH HOH . G 5 HOH A 138 538 179 HOH HOH . G 5 HOH A 139 539 30 HOH HOH . G 5 HOH A 140 540 104 HOH HOH . G 5 HOH A 141 541 137 HOH HOH . G 5 HOH A 142 542 79 HOH HOH . G 5 HOH A 143 543 191 HOH HOH . G 5 HOH A 144 544 44 HOH HOH . G 5 HOH A 145 545 101 HOH HOH . G 5 HOH A 146 546 51 HOH HOH . G 5 HOH A 147 547 98 HOH HOH . G 5 HOH A 148 548 14 HOH HOH . G 5 HOH A 149 549 59 HOH HOH . G 5 HOH A 150 550 116 HOH HOH . G 5 HOH A 151 551 96 HOH HOH . G 5 HOH A 152 552 232 HOH HOH . G 5 HOH A 153 553 234 HOH HOH . G 5 HOH A 154 554 194 HOH HOH . G 5 HOH A 155 555 105 HOH HOH . G 5 HOH A 156 556 80 HOH HOH . G 5 HOH A 157 557 233 HOH HOH . G 5 HOH A 158 558 38 HOH HOH . G 5 HOH A 159 559 219 HOH HOH . G 5 HOH A 160 560 52 HOH HOH . G 5 HOH A 161 561 64 HOH HOH . G 5 HOH A 162 562 6 HOH HOH . G 5 HOH A 163 563 88 HOH HOH . G 5 HOH A 164 564 16 HOH HOH . G 5 HOH A 165 565 128 HOH HOH . G 5 HOH A 166 566 93 HOH HOH . G 5 HOH A 167 567 197 HOH HOH . G 5 HOH A 168 568 210 HOH HOH . G 5 HOH A 169 569 147 HOH HOH . G 5 HOH A 170 570 213 HOH HOH . G 5 HOH A 171 571 240 HOH HOH . G 5 HOH A 172 572 211 HOH HOH . G 5 HOH A 173 573 224 HOH HOH . G 5 HOH A 174 574 12 HOH HOH . G 5 HOH A 175 575 192 HOH HOH . G 5 HOH A 176 576 248 HOH HOH . G 5 HOH A 177 577 75 HOH HOH . G 5 HOH A 178 578 205 HOH HOH . G 5 HOH A 179 579 185 HOH HOH . G 5 HOH A 180 580 170 HOH HOH . G 5 HOH A 181 581 241 HOH HOH . G 5 HOH A 182 582 131 HOH HOH . G 5 HOH A 183 583 199 HOH HOH . G 5 HOH A 184 584 161 HOH HOH . G 5 HOH A 185 585 125 HOH HOH . G 5 HOH A 186 586 159 HOH HOH . G 5 HOH A 187 587 143 HOH HOH . G 5 HOH A 188 588 184 HOH HOH . G 5 HOH A 189 589 171 HOH HOH . G 5 HOH A 190 590 249 HOH HOH . G 5 HOH A 191 591 247 HOH HOH . G 5 HOH A 192 592 97 HOH HOH . G 5 HOH A 193 593 136 HOH HOH . G 5 HOH A 194 594 239 HOH HOH . G 5 HOH A 195 595 100 HOH HOH . G 5 HOH A 196 596 149 HOH HOH . G 5 HOH A 197 597 212 HOH HOH . G 5 HOH A 198 598 165 HOH HOH . G 5 HOH A 199 599 146 HOH HOH . G 5 HOH A 200 600 176 HOH HOH . G 5 HOH A 201 601 109 HOH HOH . G 5 HOH A 202 602 251 HOH HOH . G 5 HOH A 203 603 108 HOH HOH . G 5 HOH A 204 604 238 HOH HOH . G 5 HOH A 205 605 122 HOH HOH . G 5 HOH A 206 606 235 HOH HOH . G 5 HOH A 207 607 103 HOH HOH . G 5 HOH A 208 608 222 HOH HOH . G 5 HOH A 209 609 183 HOH HOH . G 5 HOH A 210 610 65 HOH HOH . G 5 HOH A 211 611 87 HOH HOH . G 5 HOH A 212 612 189 HOH HOH . G 5 HOH A 213 613 120 HOH HOH . G 5 HOH A 214 614 172 HOH HOH . G 5 HOH A 215 615 236 HOH HOH . G 5 HOH A 216 616 124 HOH HOH . G 5 HOH A 217 617 130 HOH HOH . G 5 HOH A 218 618 111 HOH HOH . G 5 HOH A 219 619 157 HOH HOH . G 5 HOH A 220 620 43 HOH HOH . G 5 HOH A 221 621 150 HOH HOH . G 5 HOH A 222 622 204 HOH HOH . G 5 HOH A 223 623 135 HOH HOH . G 5 HOH A 224 624 245 HOH HOH . G 5 HOH A 225 625 123 HOH HOH . G 5 HOH A 226 626 202 HOH HOH . G 5 HOH A 227 627 152 HOH HOH . G 5 HOH A 228 628 89 HOH HOH . G 5 HOH A 229 629 187 HOH HOH . G 5 HOH A 230 630 196 HOH HOH . G 5 HOH A 231 631 246 HOH HOH . G 5 HOH A 232 632 223 HOH HOH . G 5 HOH A 233 633 95 HOH HOH . G 5 HOH A 234 634 145 HOH HOH . G 5 HOH A 235 635 230 HOH HOH . G 5 HOH A 236 636 133 HOH HOH . G 5 HOH A 237 637 215 HOH HOH . G 5 HOH A 238 638 140 HOH HOH . G 5 HOH A 239 639 186 HOH HOH . G 5 HOH A 240 640 252 HOH HOH . G 5 HOH A 241 641 160 HOH HOH . G 5 HOH A 242 642 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -28.227 -29.309 -0.453 1 54.68 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 4 -28.422 -28.617 -1.671 1 42.56 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 4 -29.66 -29.545 0.181 1 75.1 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 4 -29.605 -30.177 1.417 1 80.59 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 4 -30.447 -30.389 -0.867 1 72.65 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 4 -29.525 -31.249 -1.445 1 57.28 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #