data_6JN5 # _model_server_result.job_id WDKeMSiOjpJvGpVKRnXl2Q _model_server_result.datetime_utc '2024-11-13 04:52:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6JN5 # _exptl.entry_id 6JN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(S)-(4-fluorophenyl)-[[(2S)-2-methyl-3-sulfanyl-propanoyl]amino]methyl]boronic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JN5 _cell.length_a 164.757 _cell.length_b 164.757 _cell.length_c 94.499 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 69 1_555 A SG CYS 212 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 43 B CYS 69 1_555 B SG CYS 212 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 C SG CYS 43 C CYS 69 1_555 C SG CYS 212 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 43 D CYS 69 1_555 D SG CYS 212 D CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C11 H15 B F N O3 S' _chem_comp.formula_weight 271.116 _chem_comp.id BXU _chem_comp.mon_nstd_flag . _chem_comp.name '[(S)-(4-fluorophenyl)-[[(2S)-2-methyl-3-sulfanyl-propanoyl]amino]methyl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F18 C15 BXU sing 70 n n C15 C14 BXU doub 71 n y C15 C16 BXU sing 72 n y C14 C13 BXU sing 73 n y C16 C17 BXU doub 74 n y C13 C12 BXU doub 75 n y C17 C12 BXU sing 76 n y C12 C1 BXU sing 77 n n S7 C6 BXU sing 78 n n O10 B9 BXU sing 79 n n C6 C5 BXU sing 80 n n C1 B9 BXU sing 81 n n C1 N2 BXU sing 82 n n B9 O11 BXU sing 83 n n N2 C3 BXU sing 84 n n C5 C3 BXU sing 85 n n C5 C8 BXU sing 86 n n C3 O4 BXU doub 87 n n C13 H1 BXU sing 88 n n C16 H2 BXU sing 89 n n C17 H3 BXU sing 90 n n C14 H4 BXU sing 91 n n C1 H5 BXU sing 92 n n N2 H6 BXU sing 93 n n C5 H7 BXU sing 94 n n C6 H8 BXU sing 95 n n C6 H9 BXU sing 96 n n S7 H10 BXU sing 97 n n C8 H11 BXU sing 98 n n C8 H12 BXU sing 99 n n C8 H13 BXU sing 100 n n O11 H14 BXU sing 101 n n O10 H15 BXU sing 102 n n # _atom_sites.entry_id 6JN5 _atom_sites.fract_transf_matrix[1][1] 0.00607 _atom_sites.fract_transf_matrix[1][2] 0.003504 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BXU A 1 301 301 BXU W07 . F 2 BXU B 1 301 301 BXU W07 . G 2 BXU C 1 301 301 BXU W07 . H 2 BXU D 1 301 301 BXU W07 . I 3 HOH A 1 401 174 HOH HOH . I 3 HOH A 2 402 92 HOH HOH . I 3 HOH A 3 403 15 HOH HOH . I 3 HOH A 4 404 159 HOH HOH . I 3 HOH A 5 405 146 HOH HOH . I 3 HOH A 6 406 27 HOH HOH . I 3 HOH A 7 407 37 HOH HOH . I 3 HOH A 8 408 164 HOH HOH . I 3 HOH A 9 409 31 HOH HOH . I 3 HOH A 10 410 76 HOH HOH . I 3 HOH A 11 411 178 HOH HOH . I 3 HOH A 12 412 200 HOH HOH . I 3 HOH A 13 413 60 HOH HOH . I 3 HOH A 14 414 141 HOH HOH . I 3 HOH A 15 415 47 HOH HOH . I 3 HOH A 16 416 122 HOH HOH . I 3 HOH A 17 417 75 HOH HOH . I 3 HOH A 18 418 39 HOH HOH . I 3 HOH A 19 419 54 HOH HOH . I 3 HOH A 20 420 51 HOH HOH . I 3 HOH A 21 421 90 HOH HOH . I 3 HOH A 22 422 166 HOH HOH . I 3 HOH A 23 423 189 HOH HOH . I 3 HOH A 24 424 207 HOH HOH . I 3 HOH A 25 425 158 HOH HOH . I 3 HOH A 26 426 127 HOH HOH . I 3 HOH A 27 427 197 HOH HOH . I 3 HOH A 28 428 35 HOH HOH . I 3 HOH A 29 429 85 HOH HOH . I 3 HOH A 30 430 149 HOH HOH . I 3 HOH A 31 431 8 HOH HOH . I 3 HOH A 32 432 44 HOH HOH . I 3 HOH A 33 433 89 HOH HOH . I 3 HOH A 34 434 79 HOH HOH . I 3 HOH A 35 435 99 HOH HOH . I 3 HOH A 36 436 98 HOH HOH . I 3 HOH A 37 437 142 HOH HOH . I 3 HOH A 38 438 179 HOH HOH . I 3 HOH A 39 439 165 HOH HOH . I 3 HOH A 40 440 91 HOH HOH . I 3 HOH A 41 441 131 HOH HOH . I 3 HOH A 42 442 64 HOH HOH . I 3 HOH A 43 443 17 HOH HOH . I 3 HOH A 44 444 169 HOH HOH . I 3 HOH A 45 445 192 HOH HOH . I 3 HOH A 46 446 80 HOH HOH . I 3 HOH A 47 447 103 HOH HOH . I 3 HOH A 48 448 120 HOH HOH . I 3 HOH A 49 449 194 HOH HOH . I 3 HOH A 50 450 4 HOH HOH . I 3 HOH A 51 451 128 HOH HOH . I 3 HOH A 52 452 46 HOH HOH . I 3 HOH A 53 453 58 HOH HOH . I 3 HOH A 54 454 126 HOH HOH . I 3 HOH A 55 455 50 HOH HOH . I 3 HOH A 56 456 70 HOH HOH . I 3 HOH A 57 457 139 HOH HOH . I 3 HOH A 58 458 145 HOH HOH . I 3 HOH A 59 459 204 HOH HOH . I 3 HOH A 60 460 2 HOH HOH . I 3 HOH A 61 461 180 HOH HOH . I 3 HOH A 62 462 49 HOH HOH . I 3 HOH A 63 463 113 HOH HOH . I 3 HOH A 64 464 155 HOH HOH . I 3 HOH A 65 465 205 HOH HOH . I 3 HOH A 66 466 83 HOH HOH . I 3 HOH A 67 467 9 HOH HOH . I 3 HOH A 68 468 168 HOH HOH . I 3 HOH A 69 469 97 HOH HOH . I 3 HOH A 70 470 193 HOH HOH . I 3 HOH A 71 471 55 HOH HOH . I 3 HOH A 72 472 135 HOH HOH . J 3 HOH B 1 401 87 HOH HOH . J 3 HOH B 2 402 124 HOH HOH . J 3 HOH B 3 403 161 HOH HOH . J 3 HOH B 4 404 94 HOH HOH . J 3 HOH B 5 405 41 HOH HOH . J 3 HOH B 6 406 52 HOH HOH . J 3 HOH B 7 407 7 HOH HOH . J 3 HOH B 8 408 101 HOH HOH . J 3 HOH B 9 409 162 HOH HOH . J 3 HOH B 10 410 95 HOH HOH . J 3 HOH B 11 411 42 HOH HOH . J 3 HOH B 12 412 196 HOH HOH . J 3 HOH B 13 413 201 HOH HOH . J 3 HOH B 14 414 144 HOH HOH . J 3 HOH B 15 415 111 HOH HOH . J 3 HOH B 16 416 19 HOH HOH . J 3 HOH B 17 417 69 HOH HOH . J 3 HOH B 18 418 66 HOH HOH . J 3 HOH B 19 419 65 HOH HOH . J 3 HOH B 20 420 121 HOH HOH . J 3 HOH B 21 421 62 HOH HOH . J 3 HOH B 22 422 188 HOH HOH . J 3 HOH B 23 423 14 HOH HOH . J 3 HOH B 24 424 117 HOH HOH . J 3 HOH B 25 425 59 HOH HOH . J 3 HOH B 26 426 10 HOH HOH . J 3 HOH B 27 427 32 HOH HOH . J 3 HOH B 28 428 82 HOH HOH . J 3 HOH B 29 429 136 HOH HOH . J 3 HOH B 30 430 26 HOH HOH . J 3 HOH B 31 431 45 HOH HOH . J 3 HOH B 32 432 21 HOH HOH . J 3 HOH B 33 433 43 HOH HOH . J 3 HOH B 34 434 16 HOH HOH . J 3 HOH B 35 435 48 HOH HOH . J 3 HOH B 36 436 105 HOH HOH . J 3 HOH B 37 437 108 HOH HOH . J 3 HOH B 38 438 33 HOH HOH . J 3 HOH B 39 439 187 HOH HOH . J 3 HOH B 40 440 133 HOH HOH . J 3 HOH B 41 441 63 HOH HOH . J 3 HOH B 42 442 88 HOH HOH . J 3 HOH B 43 443 173 HOH HOH . J 3 HOH B 44 444 22 HOH HOH . J 3 HOH B 45 445 1 HOH HOH . J 3 HOH B 46 446 163 HOH HOH . J 3 HOH B 47 447 170 HOH HOH . J 3 HOH B 48 448 25 HOH HOH . J 3 HOH B 49 449 72 HOH HOH . J 3 HOH B 50 450 150 HOH HOH . J 3 HOH B 51 451 20 HOH HOH . J 3 HOH B 52 452 84 HOH HOH . J 3 HOH B 53 453 29 HOH HOH . J 3 HOH B 54 454 210 HOH HOH . J 3 HOH B 55 455 123 HOH HOH . J 3 HOH B 56 456 172 HOH HOH . J 3 HOH B 57 457 202 HOH HOH . J 3 HOH B 58 458 116 HOH HOH . J 3 HOH B 59 459 67 HOH HOH . J 3 HOH B 60 460 38 HOH HOH . J 3 HOH B 61 461 93 HOH HOH . J 3 HOH B 62 462 109 HOH HOH . J 3 HOH B 63 463 3 HOH HOH . J 3 HOH B 64 464 209 HOH HOH . J 3 HOH B 65 465 30 HOH HOH . J 3 HOH B 66 466 6 HOH HOH . J 3 HOH B 67 467 183 HOH HOH . J 3 HOH B 68 468 77 HOH HOH . J 3 HOH B 69 469 203 HOH HOH . J 3 HOH B 70 470 129 HOH HOH . J 3 HOH B 71 471 157 HOH HOH . J 3 HOH B 72 472 11 HOH HOH . J 3 HOH B 73 473 57 HOH HOH . J 3 HOH B 74 474 184 HOH HOH . K 3 HOH C 1 401 107 HOH HOH . K 3 HOH C 2 402 137 HOH HOH . K 3 HOH C 3 403 68 HOH HOH . K 3 HOH C 4 404 177 HOH HOH . K 3 HOH C 5 405 156 HOH HOH . K 3 HOH C 6 406 147 HOH HOH . K 3 HOH C 7 407 195 HOH HOH . K 3 HOH C 8 408 18 HOH HOH . K 3 HOH C 9 409 53 HOH HOH . K 3 HOH C 10 410 81 HOH HOH . K 3 HOH C 11 411 138 HOH HOH . K 3 HOH C 12 412 110 HOH HOH . K 3 HOH C 13 413 104 HOH HOH . K 3 HOH C 14 414 23 HOH HOH . K 3 HOH C 15 415 118 HOH HOH . K 3 HOH C 16 416 130 HOH HOH . K 3 HOH C 17 417 190 HOH HOH . K 3 HOH C 18 418 71 HOH HOH . K 3 HOH C 19 419 34 HOH HOH . K 3 HOH C 20 420 61 HOH HOH . K 3 HOH C 21 421 208 HOH HOH . K 3 HOH C 22 422 40 HOH HOH . K 3 HOH C 23 423 24 HOH HOH . K 3 HOH C 24 424 152 HOH HOH . K 3 HOH C 25 425 153 HOH HOH . K 3 HOH C 26 426 181 HOH HOH . K 3 HOH C 27 427 148 HOH HOH . K 3 HOH C 28 428 73 HOH HOH . K 3 HOH C 29 429 175 HOH HOH . K 3 HOH C 30 430 28 HOH HOH . K 3 HOH C 31 431 102 HOH HOH . K 3 HOH C 32 432 211 HOH HOH . K 3 HOH C 33 433 13 HOH HOH . K 3 HOH C 34 434 176 HOH HOH . K 3 HOH C 35 435 12 HOH HOH . K 3 HOH C 36 436 86 HOH HOH . K 3 HOH C 37 437 160 HOH HOH . K 3 HOH C 38 438 171 HOH HOH . K 3 HOH C 39 439 119 HOH HOH . L 3 HOH D 1 401 114 HOH HOH . L 3 HOH D 2 402 186 HOH HOH . L 3 HOH D 3 403 56 HOH HOH . L 3 HOH D 4 404 182 HOH HOH . L 3 HOH D 5 405 115 HOH HOH . L 3 HOH D 6 406 78 HOH HOH . L 3 HOH D 7 407 167 HOH HOH . L 3 HOH D 8 408 191 HOH HOH . L 3 HOH D 9 409 112 HOH HOH . L 3 HOH D 10 410 140 HOH HOH . L 3 HOH D 11 411 106 HOH HOH . L 3 HOH D 12 412 151 HOH HOH . L 3 HOH D 13 413 100 HOH HOH . L 3 HOH D 14 414 199 HOH HOH . L 3 HOH D 15 415 5 HOH HOH . L 3 HOH D 16 416 154 HOH HOH . L 3 HOH D 17 417 198 HOH HOH . L 3 HOH D 18 418 143 HOH HOH . L 3 HOH D 19 419 36 HOH HOH . L 3 HOH D 20 420 185 HOH HOH . L 3 HOH D 21 421 74 HOH HOH . L 3 HOH D 22 422 206 HOH HOH . L 3 HOH D 23 423 96 HOH HOH . L 3 HOH D 24 424 134 HOH HOH . L 3 HOH D 25 425 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 BXU . . . F 2 -62.661 44.283 142.182 1 15.41 ? C13 BXU 301 B 1 HETATM 2 C C16 BXU . . . F 2 -65.308 45.027 141.977 1 14.94 ? C16 BXU 301 B 1 HETATM 3 C C17 BXU . . . F 2 -64.803 44.078 141.137 1 14.55 ? C17 BXU 301 B 1 HETATM 4 C C12 BXU . . . F 2 -63.495 43.679 141.231 1 12.05 ? C12 BXU 301 B 1 HETATM 5 C C14 BXU . . . F 2 -63.191 45.235 143.036 1 13.74 ? C14 BXU 301 B 1 HETATM 6 C C15 BXU . . . F 2 -64.522 45.59 142.929 1 13.7 ? C15 BXU 301 B 1 HETATM 7 O O4 BXU . . . F 2 -60.775 44.438 138.465 1 15.97 ? O4 BXU 301 B 1 HETATM 8 C C1 BXU . . . F 2 -63.052 42.644 140.18 1 17.36 ? C1 BXU 301 B 1 HETATM 9 N N2 BXU . . . F 2 -61.849 43.219 139.76 1 20.95 ? N2 BXU 301 B 1 HETATM 10 C C3 BXU . . . F 2 -61.834 43.997 138.587 1 9.19 ? C3 BXU 301 B 1 HETATM 11 C C5 BXU . . . F 2 -62.996 44.192 137.586 1 23.84 ? C5 BXU 301 B 1 HETATM 12 C C6 BXU . . . F 2 -63.954 45.281 138.091 1 29.24 ? C6 BXU 301 B 1 HETATM 13 S S7 BXU . . . F 2 -65.173 45.816 136.863 1 29.27 ? S7 BXU 301 B 1 HETATM 14 C C8 BXU . . . F 2 -62.455 44.532 136.191 1 21.02 ? C8 BXU 301 B 1 HETATM 15 B B9 BXU . . . F 2 -62.915 41.144 140.632 1 9.26 ? B9 BXU 301 B 1 HETATM 16 O O10 BXU . . . F 2 -64.139 40.635 140.536 1 5.9 ? O10 BXU 301 B 1 HETATM 17 O O11 BXU . . . F 2 -61.881 40.352 140.217 1 7.51 ? O11 BXU 301 B 1 HETATM 18 F F18 BXU . . . F 2 -65.118 46.525 143.711 1 9.12 ? F18 BXU 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #